Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Reverse (-)

8655847 .. 8660172

Gene Structure 4326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG110100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTTTTAGAGCTAAAGTCAGTTGCTTTGGTTCTGAACCATAAAGGGGTTAAAGAATTATCTGAAATAGGCCTTGAAATGTATCAGGCTTCAAAGGATAATATCACTGTGCTTGCAGCTCTTGCAAAAACCCCATCCTCAGAATATGTGAATGTGCTGCGATGGTACAAACATATTGAGGCACTTCTGAGGATTTCTGGTGTTTCCAGAGAAGGTTGTGGTGTCACCATCAAGGGAGATGCTCCTGTCATAGCAGCTGAAACAAAGGCCTCAGGTGCTGAAGTAGATGATGATGATGTGGATCTTTTTGGTGAAGAAACCGAAGAGGAGAAGAAGGCTGCTCAAGAACGTGCAGCCCGCATCAAGGCATCTGCAAAAAAGAAAGAGTCCAAACTTGTACCTGTTGGGTACTGGATAAAGAAGTTGCAGATAATGCTAATTGAGGAACATCTCACAGTTGAACCAATTAATGAGTATGTCCAAAGCTGCGATATTGACAAGAAGAAGGGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

171

Amino Acids

18.93

Weight (kDa)

5.53

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	3 cut(s)	167, 399, 410
AfiI	CCNNNNNNNGG	2 cut(s)	46, 364
AgsI	TTSAA	3 cut(s)	77, 93, 461
AluBI	AGCT	4 cut(s)	13, 119, 257, 486
AluI	AGCT	4 cut(s)	13, 119, 257, 486
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	70, 267
ApeKI	GCWGC	6 cut(s)	116, 157, 254, 338, 353, 486
AseI	ATTAAT	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	217, 323
AxyI	CCTNAGG	1 cut(s)	271
BbvI	GCAGC	6 cut(s)	128, 144, 266, 325, 365, 473
BccI	CCATC	3 cut(s)	142, 156, 236
BisI	GCNGC	6 cut(s)	117, 158, 255, 339, 354, 487
BlsI	GCNGC	6 cut(s)	118, 159, 256, 340, 355, 488
BmsI	GCATC	3 cut(s)	229, 369, 377
BpuEI	CTTGAG	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 364
Bse1I	ACTGG	1 cut(s)	416
Bse21I	CCTNAGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	300
BseGI	GGATG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	46, 364
BseMII	CTCAG	3 cut(s)	153, 179, 285
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	6 cut(s)	128, 144, 266, 325, 365, 473
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	72, 269
BslI	CCNNNNNNNGG	2 cut(s)	46, 364
BsnI	GGCC	2 cut(s)	72, 269
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	2 cut(s)	72, 269
BspCNI	CTCAG	3 cut(s)	152, 180, 284
BspPI	GGATC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	416
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	109, 457
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	2 cut(s)	122, 433
BstC8I	GCNNGC	2 cut(s)	114, 358
BstDEI	CTNAG	3 cut(s)	139, 188, 271
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 275, 433
BstV1I	GCAGC	6 cut(s)	128, 144, 266, 325, 365, 473
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
Bsu36I	CCTNAGG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	72, 269
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	114, 358
CaiI	CAGNNNCTG	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	166, 398, 409
CviJI	RGCY	9 cut(s)	13, 72, 89, 119, 257, 269, 338, 356, 486
CviKI_1	RGCY	9 cut(s)	13, 72, 89, 119, 257, 269, 338, 356, 486
CviQI	GTAC	3 cut(s)	166, 398, 409
DdeI	CTNAG	3 cut(s)	139, 188, 271
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco147I	AGGCCT	2 cut(s)	72, 269
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	271
FaiI	YATR	6 cut(s)	42, 147, 174, 251, 477, 514
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	6 cut(s)	117, 158, 255, 339, 354, 487
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	6 cut(s)	117, 158, 255, 339, 354, 487
GluI	GCNGC	6 cut(s)	117, 158, 255, 339, 354, 487
HaeIII	GGCC	2 cut(s)	72, 269
HinfI	GANTC	1 cut(s)	386
HphI	GGTGA	2 cut(s)	217, 323
Hpy188I	TCNGA	4 cut(s)	36, 64, 142, 189
Hpy188III	TCNNGA	2 cut(s)	207, 344
HpyAV	CCTTC	3 cut(s)	206, 328, 499
HpyCH4III	ACNGT	2 cut(s)	109, 457
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	116, 125, 353, 374, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 275, 433
HpyF3I	CTNAG	3 cut(s)	139, 188, 271
HpySE526I	ACGT	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	7 cut(s)	71, 183, 220, 258, 258, 397, 414
Lsp1109I	GCAGC	6 cut(s)	128, 144, 266, 325, 365, 473
LweI	GCATC	3 cut(s)	229, 369, 377
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	4 cut(s)	326, 335, 343, 514
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	3 cut(s)	56, 438, 465
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	6 cut(s)	148, 172, 183, 280, 319, 436
MseI	TTAA	2 cut(s)	51, 468
MspA1I	CMGCKG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	122, 275, 433
NdeII	GATC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	2 cut(s)	72, 269
PkrI	GCNGC	6 cut(s)	118, 159, 256, 340, 355, 488
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	167, 399, 410
RsaNI	GTAC	3 cut(s)	166, 398, 409
SaqAI	TTAA	2 cut(s)	51, 468
SatI	GCNGC	6 cut(s)	117, 158, 255, 339, 354, 487
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	395
SetI	ASST	8 cut(s)	15, 121, 217, 259, 277, 352, 403, 488
SfaNI	GCATC	3 cut(s)	229, 369, 377
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	3 cut(s)	56, 438, 465
SseBI	AGGCCT	2 cut(s)	72, 269
SsiI	CCGC	1 cut(s)	358
StuI	AGGCCT	2 cut(s)	72, 269
TaaI	ACNGT	2 cut(s)	109, 457
TaiI	ACGT	1 cut(s)	352
TasI	AATT	3 cut(s)	56, 438, 465
Tru1I	TTAA	2 cut(s)	51, 468
Tru9I	TTAA	2 cut(s)	51, 468
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	6 cut(s)	116, 157, 254, 338, 353, 486
Tsp45I	GTSAC	1 cut(s)	223
TspRI	CASTG	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.