Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

17564724 .. 17567239

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCAGTCACATTCCATGACATCAACTCGGCTGTTGGCCTGAAGAAATTGGATGACTACTTGCTTGCCCGCAGTTACATTACTGGCTACGAAGCTTCAAAGGATGATCTCATTGTCCATGCAGCTCTTTCAAAGCCTCCATCATCAGAATTTGTGAACGTGTCTCGGTGGTACAATCATATCACTGCACTTCTTAGGATTTCTGGTGTTTCTGGACAAGGCTCTGGTGTCATTGTTGAGGGATCTGCTCCCATCACAGAGGAAGCAGTTGCTACACCTCCTGTGGCTGATACAAAGGCCTCAGCTGCTGAAGACGATGATGATGTGGATCTGTTTGGTGAAGAGACTGAAGAAGAGAAGAAGGCTGCTGAAGAGCGTGCAGCTTCCATCAAGGCATCTACAAAAAAGAAAGAATCTGGAAAGTCATCAGTCCTGTTGGATGTGAAGCCATGGGATGATGAAACTGACATGAAAAAGCTTGAGGAGGCAGTAAGAAGTGTTCACATTGAAGGCTTGCATTGGGGAGCATCCAAACTTGTAGCTGTTGGGTATGGAATAAAGAAGTTGCAAATAATGCTAACAATTGTTGATGACCTGGTCTCTGTTGACACTCTTATTGAGGAACAACTTACTGTTGAACCAATTAATGAGTATGTCCAGAGCTGTGACATTGTAGCCTTCAACAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

231

Amino Acids

24.99

Weight (kDa)

4.66

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	250, 336
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	4 cut(s)	62, 330, 369, 390
AfaI	GTAC	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	99, 132, 509, 638, 682
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	7 cut(s)	95, 125, 305, 383, 478, 542, 663
AluI	AGCT	7 cut(s)	95, 125, 305, 383, 478, 542, 663
Alw26I	GTCTC	3 cut(s)	168, 338, 604
AlwI	GGATC	2 cut(s)	250, 336
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	37, 297
ApeKI	GCWGC	4 cut(s)	122, 305, 365, 380
ApoI	RAATTY	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	301
BbvI	GCAGC	4 cut(s)	134, 292, 352, 392
BccI	CCATC	3 cut(s)	148, 260, 395
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	168, 338, 604
BisI	GCNGC	4 cut(s)	123, 306, 366, 381
BlsI	GCNGC	4 cut(s)	124, 307, 367, 382
Bme1390I	CCNGG	1 cut(s)	596
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	2 cut(s)	404, 536
BpiI	GAAGAC	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	5 cut(s)	58, 109, 445, 460, 527
BseJI	GATNNNNATC	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	134, 292, 352, 392
BsgI	GTGCAG	2 cut(s)	171, 399
BshFI	GGCC	2 cut(s)	39, 299
BsmAI	GTCTC	3 cut(s)	168, 338, 604
BsnI	GGCC	2 cut(s)	39, 299
Bso31I	GGTCTC	1 cut(s)	604
Bsp143I	GATC	3 cut(s)	106, 242, 328
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	39, 299
BspCNI	CTCAG	1 cut(s)	314
BspPI	GGATC	2 cut(s)	250, 336
BspQI	GCTCTTC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	604
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	3 cut(s)	106, 242, 328
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	3 cut(s)	336, 348, 366
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstC8I	GCNNGC	4 cut(s)	66, 70, 378, 515
BstDEI	CTNAG	2 cut(s)	194, 301
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	5 cut(s)	58, 109, 445, 460, 527
BstKTI	GATC	3 cut(s)	109, 245, 331
BstMAI	GTCTC	3 cut(s)	168, 338, 604
BstMBI	GATC	3 cut(s)	106, 242, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 574
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	134, 292, 352, 392
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	242, 328
BstYI	RGATCY	2 cut(s)	242, 328
BsuRI	GGCC	2 cut(s)	39, 299
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	5 cut(s)	58, 109, 445, 460, 527
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	66, 70, 378, 515
CaiI	CAGNNNCTG	1 cut(s)	308
CsiI	ACCWGGT	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	17, 119, 450, 469
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	194, 301
DpnI	GATC	3 cut(s)	108, 244, 330
DpnII	GATC	3 cut(s)	106, 242, 328
Eam1104I	CTCTTC	3 cut(s)	336, 348, 366
EarI	CTCTTC	3 cut(s)	336, 348, 366
Eco130I	CCWWGG	1 cut(s)	449
Eco147I	AGGCCT	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	604
Eco57I	CTGAAG	4 cut(s)	62, 330, 369, 390
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	4 cut(s)	20, 122, 453, 472
FaiI	YATR	8 cut(s)	18, 120, 180, 451, 470, 552, 654, 691
FatI	CATG	4 cut(s)	16, 118, 449, 468
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	123, 306, 366, 381
FokI	GGATG	5 cut(s)	65, 116, 452, 467, 514
Fsp4HI	GCNGC	4 cut(s)	123, 306, 366, 381
GluI	GCNGC	4 cut(s)	123, 306, 366, 381
HaeIII	GGCC	2 cut(s)	39, 299
Hin1II	CATG	4 cut(s)	20, 122, 453, 472
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	2 cut(s)	93, 476
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	3 cut(s)	157, 502, 607
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	213, 417, 658
Hpy8I	GTNNAC	3 cut(s)	157, 502, 607
HpyAV	CCTTC	3 cut(s)	355, 503, 688
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	122, 188, 380, 517, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 574
HpyF3I	CTNAG	2 cut(s)	194, 301
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	20, 122, 453, 472
Kzo9I	GATC	3 cut(s)	106, 242, 328
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	253, 524
Lsp1109I	GCAGC	4 cut(s)	134, 292, 352, 392
LweI	GCATC	2 cut(s)	404, 536
MabI	ACCWGGT	1 cut(s)	594
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	7, 74, 665
MalI	GATC	3 cut(s)	108, 244, 330
MboI	GATC	3 cut(s)	106, 242, 328
MboII	GAAGA	7 cut(s)	55, 323, 353, 362, 365, 370, 383
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	2 cut(s)	242, 328
MluCI	AATT	4 cut(s)	47, 149, 582, 642
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	8 cut(s)	147, 232, 253, 288, 310, 475, 478, 613
MseI	TTAA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	305, 574
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	3 cut(s)	106, 242, 328
NlaIII	CATG	4 cut(s)	20, 122, 453, 472
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	7, 665
PceI	AGGCCT	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	596
PkrI	GCNGC	4 cut(s)	124, 307, 367, 382
PshBI	ATTAAT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	242, 328
PsyI	GACNNNGTC	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	123, 306, 366, 381
Sau3AI	GATC	3 cut(s)	106, 242, 328
ScrFI	CCNGG	1 cut(s)	596
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	404, 536
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	47, 149, 582, 642
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	634
TaiI	ACGT	1 cut(s)	162
TasI	AATT	4 cut(s)	47, 149, 582, 642
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	7, 665
TseI	GCWGC	4 cut(s)	122, 305, 365, 380
Tsp45I	GTSAC	2 cut(s)	7, 665
TspDTI	ATGAA	2 cut(s)	474, 485
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.