Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8123596.1

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 622

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8123596.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ggatctgctcccatcacagcagaagcagttgccacccctccagcttgtgattcaaaggcctctgcagctgaagatgatgatgatagtgatgtggatctgtttggtgaagagactgaagaggagaagaaggctgccgaagaacgtgcagctgctgtcaaggcatctaccaaaaagaaagagtctggcaagtcatcagttctattggatattaagccatgggacgatgaaacagacatgaaaaagcttgaggaggcagtaaggagcattgaggttgagggcttacattggggagcatgtaagtttcctaccccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

104

Amino Acids

11.11

Weight (kDa)

4.43

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	10, 102
AcuI	CTGAAG	2 cut(s)	90, 135
AgsI	TTSAA	1 cut(s)	54
AluBI	AGCT	4 cut(s)	44, 68, 149, 244
AluI	AGCT	4 cut(s)	44, 68, 149, 244
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	10, 102
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	4 cut(s)	65, 131, 146, 149
AsuHPI	GGTGA	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	77, 118, 136, 158
BccI	CCATC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BcoDI	GTCTC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	4 cut(s)	66, 132, 147, 150
BlsI	GCNGC	4 cut(s)	67, 133, 148, 151
BmsI	GCATC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	215
BseJI	GATNNNNATC	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	134, 263
BseXI	GCAGC	4 cut(s)	77, 118, 136, 158
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	2, 94
Bsp19I	CCATGG	1 cut(s)	215
BspANI	GGCC	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	2 cut(s)	10, 102
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	2, 94
BssT1I	CCWWGG	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	102, 111
BstDSI	CCRYGG	1 cut(s)	215
BstKTI	GATC	2 cut(s)	5, 97
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	2, 94
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 158
BstNSI	RCATGY	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	77, 118, 136, 158
BstX2I	RGATCY	2 cut(s)	2, 94
BstYI	RGATCY	2 cut(s)	2, 94
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	215
CaiI	CAGNNNCTG	1 cut(s)	152
CviAII	CATG	3 cut(s)	216, 235, 294
CviJI	RGCY	8 cut(s)	44, 59, 68, 131, 149, 214, 244, 279
CviKI_1	RGCY	8 cut(s)	44, 59, 68, 131, 149, 214, 244, 279
DpnI	GATC	2 cut(s)	4, 96
DpnII	GATC	2 cut(s)	2, 94
Eam1104I	CTCTTC	2 cut(s)	102, 111
EarI	CTCTTC	2 cut(s)	102, 111
Eco130I	CCWWGG	1 cut(s)	215
Eco147I	AGGCCT	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	90, 135
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	3 cut(s)	219, 238, 297
FaiI	YATR	3 cut(s)	217, 236, 295
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	215, 234, 293
Fnu4HI	GCNGC	4 cut(s)	66, 132, 147, 150
Fsp4HI	GCNGC	4 cut(s)	66, 132, 147, 150
GluI	GCNGC	4 cut(s)	66, 132, 147, 150
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	219, 238, 297
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	2 cut(s)	50, 179
HphI	GGTGA	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	65, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 158
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	219, 238, 297
Kzo9I	GATC	2 cut(s)	2, 94
LmnI	GCTCC	3 cut(s)	13, 261, 290
LpnPI	CCDG	2 cut(s)	54, 168
Lsp1109I	GCAGC	4 cut(s)	77, 118, 136, 158
LweI	GCATC	1 cut(s)	170
MaeII	ACGT	1 cut(s)	142
MalI	GATC	2 cut(s)	4, 96
MboI	GATC	2 cut(s)	2, 94
MboII	GAAGA	5 cut(s)	83, 119, 128, 136, 149
MflI	RGATCY	2 cut(s)	2, 94
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	7 cut(s)	48, 70, 112, 241, 244, 262, 268
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	2 cut(s)	68, 149
MwoI	GCNNNNNNNGC	2 cut(s)	65, 158
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	2, 94
NlaIII	CATG	3 cut(s)	219, 238, 297
NspI	RCATGY	1 cut(s)	297
PceI	AGGCCT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	67, 133, 148, 151
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	2, 94
PvuII	CAGCTG	2 cut(s)	68, 149
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	4 cut(s)	66, 132, 147, 150
Sau3AI	GATC	2 cut(s)	2, 94
SchI	GAGTC	1 cut(s)	188
SetI	ASST	6 cut(s)	46, 70, 145, 151, 246, 273
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SseBI	AGGCCT	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	4 cut(s)	65, 131, 146, 149
TspDTI	ATGAA	2 cut(s)	240, 251
XceI	RCATGY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.