Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

4740180 .. 4740972

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGTCCCTGCTGACCTGAAGAAACTGGATGAGTACTTACTTTCTAGGAGTTACATCACTGGGTATCAGGCTTCAAAGGATGATATCACTGTGCTCGCAGCTCTTGCAAAGGCCCCATCCGCGCAATATGTGAATGTGCTGCGGTGGTACAAACATATTGAGGCACTTCTGCGGATTTCTGGTGTTTCCGGAGAAGGTTGTGGTGTCACTGTCAAAGGAGACGCCCCAATCATAGCAGCTGGAATGGACGAAGATGATGATGATGTGGATATTTTCGGTGAAGAAACGGAAGAGGAGAAGAAGGCTGCTGAAGAACATGCAGCATCCATCAAGGCATCTTTTGATGGTTCTGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

121

Amino Acids

12.87

Weight (kDa)

4.53

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	3 cut(s)	123, 145, 175
AcuI	CTGAAG	2 cut(s)	41, 333
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	38, 152
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	2 cut(s)	104, 242
AluI	AGCT	2 cut(s)	104, 242
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	5 cut(s)	101, 142, 239, 308, 323
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	5 cut(s)	113, 129, 251, 295, 335
BccI	CCATC	3 cut(s)	127, 338, 341
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	5 cut(s)	102, 143, 240, 309, 324
BlsI	GCNGC	5 cut(s)	103, 144, 241, 310, 325
BmcAI	AGTACT	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	335, 347
BmuI	ACTGGG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	33, 67
BseAI	TCCGGA	1 cut(s)	191
BseGI	GGATG	4 cut(s)	37, 88, 119, 326
BseNI	ACTGG	2 cut(s)	33, 67
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	5 cut(s)	113, 129, 251, 295, 335
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp13I	TCCGGA	1 cut(s)	191
BspACI	CCGC	3 cut(s)	123, 145, 175
BspANI	GGCC	1 cut(s)	116
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	33, 67
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	94, 214
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	2 cut(s)	11, 107
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	37, 88, 119, 326
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 107, 122
BstNSI	RCATGY	1 cut(s)	323
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	5 cut(s)	113, 129, 251, 295, 335
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	4 cut(s)	37, 88, 119, 326
BtsIMutI	CAGTG	3 cut(s)	60, 90, 210
Cac8I	GCNNGC	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	37, 151
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	5 cut(s)	74, 104, 116, 242, 308
CviKI_1	RGCY	5 cut(s)	74, 104, 116, 242, 308
CviQI	GTAC	2 cut(s)	37, 151
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	41, 333
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	1 cut(s)	323
FaiI	YATR	4 cut(s)	132, 159, 236, 321
FatI	CATG	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	102, 143, 240, 309, 324
FokI	GGATG	4 cut(s)	44, 95, 106, 313
Fsp4HI	GCNGC	5 cut(s)	102, 143, 240, 309, 324
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	5 cut(s)	102, 143, 240, 309, 324
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	191, 298
HpyCH4III	ACNGT	2 cut(s)	94, 214
HpyCH4V	TGCA	3 cut(s)	110, 323, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 107, 122
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	191
LpnPI	CCDG	8 cut(s)	14, 24, 32, 48, 56, 168, 205, 228
Lsp1109I	GCAGC	5 cut(s)	113, 129, 251, 295, 335
LweI	GCATC	2 cut(s)	335, 347
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	53, 208
MboII	GAAGA	6 cut(s)	34, 266, 296, 305, 313, 326
MhlI	GDGCHC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	157, 289
MroI	TCCGGA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	11, 107, 122
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	323
PkrI	GCNGC	5 cut(s)	103, 144, 241, 310, 325
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	38, 152
RsaNI	GTAC	2 cut(s)	37, 151
SatI	GCNGC	5 cut(s)	102, 143, 240, 309, 324
Sau96I	GGNCC	1 cut(s)	115
ScaI	AGTACT	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	4 cut(s)	21, 106, 202, 244
SfaNI	GCATC	2 cut(s)	335, 347
SsiI	CCGC	3 cut(s)	123, 145, 175
SspMI	CTAG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	94, 214
TatI	WGTACW	1 cut(s)	36
TscAI	CASTG	3 cut(s)	67, 97, 217
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	5 cut(s)	101, 142, 239, 308, 323
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	3 cut(s)	67, 97, 217
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.