Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

1784768 .. 1786920

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGTTGCATTCCATGACATCAACTCGGCTGCTGGCCTCAAGAAATTGGACCAGTACTTGCTCACTCGCAGTTACATCACTGGCTATCAGGCTTCAAAGGATGATGTCACTGTGCATGCTGCTCTGTCCAAGCCTCCATCGGCTGAATACGTGAATGCGTCTCGGTGGTACAACCACATTGCTGCACTTCTTAGGATTTCAGGTGTTTCTGGAGAAGGTTGTGGTGTCACAATTAAGGGATCTGCTCCCATCACAGCAGAAGCAGTTGCCACACCTCCAGCTTGTGATTCAAAGGCCTCTGCTGCTGAAGATGATGATGATGATAGTGATGTGGATCTCTTTGGTGAAGAGACCGAAGAGGAGAAGAAGGCTGCTGAAGAACGTGCAGCTGCTGTCAAGGCATCTACCAAAAAGAAAGAGTGTGAGTTTACTATCTTGTTTTGTGCTCTTGCAGTTTGGTTGTGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

157

Amino Acids

16.77

Weight (kDa)

4.77

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	250, 345
AcuI	CTGAAG	2 cut(s)	330, 399
AfaI	GTAC	2 cut(s)	59, 173
AgsI	TTSAA	2 cut(s)	99, 294
AluBI	AGCT	2 cut(s)	284, 392
AluI	AGCT	2 cut(s)	284, 392
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	168, 347
AlwI	GGATC	2 cut(s)	250, 345
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	37, 297
ApeKI	GCWGC	7 cut(s)	32, 122, 185, 305, 374, 389, 392
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	7 cut(s)	19, 109, 172, 292, 361, 379, 401
BccI	CCATC	2 cut(s)	148, 260
BcoDI	GTCTC	2 cut(s)	168, 347
BfaI	CTAG	1 cut(s)	472
BisI	GCNGC	7 cut(s)	33, 123, 186, 306, 375, 390, 393
BlsI	GCNGC	7 cut(s)	34, 124, 187, 307, 376, 391, 394
BmcAI	AGTACT	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	413
BpmI	CTGGAG	2 cut(s)	234, 264
BpuEI	CTTGAG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	55, 88
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	336
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	55, 88
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	7 cut(s)	19, 109, 172, 292, 361, 379, 401
BsgI	GTGCAG	2 cut(s)	171, 408
BshFI	GGCC	2 cut(s)	39, 299
BsiHKAI	GWGCWC	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	168, 347
BsmBI	CGTCTC	1 cut(s)	168
BsmI	GAATGC	2 cut(s)	11, 163
BsnI	GGCC	2 cut(s)	39, 299
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	242, 337
BspANI	GGCC	2 cut(s)	39, 299
BspPI	GGATC	2 cut(s)	250, 345
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	55, 88
BssMI	GATC	2 cut(s)	242, 337
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	345, 354
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	37, 120
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	245, 340
BstMAI	GTCTC	2 cut(s)	168, 347
BstMBI	GATC	2 cut(s)	242, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 401
BstNSI	RCATGY	1 cut(s)	122
BstV1I	GCAGC	7 cut(s)	19, 109, 172, 292, 361, 379, 401
BstX2I	RGATCY	2 cut(s)	242, 337
BstYI	RGATCY	2 cut(s)	242, 337
BsuRI	GGCC	2 cut(s)	39, 299
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	81, 111
Cac8I	GCNNGC	2 cut(s)	37, 120
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	58, 172
CviAII	CATG	2 cut(s)	17, 119
CviQI	GTAC	2 cut(s)	58, 172
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	244, 339
DpnII	GATC	2 cut(s)	242, 337
Eam1104I	CTCTTC	2 cut(s)	345, 354
EarI	CTCTTC	2 cut(s)	345, 354
Eco147I	AGGCCT	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	330, 399
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	20, 122
FaiI	YATR	2 cut(s)	18, 120
FatI	CATG	2 cut(s)	16, 118
Fnu4HI	GCNGC	7 cut(s)	33, 123, 186, 306, 375, 390, 393
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	7 cut(s)	33, 123, 186, 306, 375, 390, 393
FspBI	CTAG	1 cut(s)	472
GluI	GCNGC	7 cut(s)	33, 123, 186, 306, 375, 390, 393
GsuI	CTGGAG	2 cut(s)	234, 264
HaeIII	GGCC	2 cut(s)	39, 299
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	20, 122
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188III	TCNNGA	2 cut(s)	43, 213
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	2 cut(s)	212, 364
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	153, 385
HpyCH4V	TGCA	5 cut(s)	11, 118, 188, 389, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 401
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	2 cut(s)	153, 385
Hsp92II	CATG	2 cut(s)	20, 122
Kzo9I	GATC	2 cut(s)	242, 337
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	21, 68, 69, 77, 189, 198, 294
Lsp1109I	GCAGC	7 cut(s)	19, 109, 172, 292, 361, 379, 401
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	472
MaeII	ACGT	2 cut(s)	153, 385
MaeIII	GTNAC	4 cut(s)	74, 109, 229, 467
MalI	GATC	2 cut(s)	244, 339
MboI	GATC	2 cut(s)	242, 337
MboII	GAAGA	5 cut(s)	323, 362, 371, 379, 392
MflI	RGATCY	2 cut(s)	242, 337
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	2 cut(s)	47, 234
MnlI	CCTC	5 cut(s)	50, 147, 288, 310, 355
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	392
Mva1269I	GAATGC	2 cut(s)	11, 163
MwoI	GCNNNNNNNGC	2 cut(s)	305, 401
NdeII	GATC	2 cut(s)	242, 337
NlaIII	CATG	2 cut(s)	20, 122
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	109, 229
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	299
PctI	GAATGC	2 cut(s)	11, 163
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	7 cut(s)	34, 124, 187, 307, 376, 391, 394
Ppu21I	YACGTR	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	242, 337
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	59, 173
RsaNI	GTAC	2 cut(s)	58, 172
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	7 cut(s)	33, 123, 186, 306, 375, 390, 393
Sau3AI	GATC	2 cut(s)	242, 337
Sau96I	GGNCC	1 cut(s)	52
ScaI	AGTACT	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	7 cut(s)	156, 208, 223, 280, 286, 388, 394
SfaNI	GCATC	1 cut(s)	413
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	47, 234
SseBI	AGGCCT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	472
StuI	AGGCCT	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	2 cut(s)	156, 388
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	2 cut(s)	47, 234
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	88, 118
TseFI	GTSAC	2 cut(s)	109, 229
TseI	GCWGC	7 cut(s)	32, 122, 185, 305, 374, 389, 392
Tsp45I	GTSAC	2 cut(s)	109, 229
TspRI	CASTG	2 cut(s)	88, 118
VpaK11BI	GGWCC	1 cut(s)	52
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	1 cut(s)	472
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.