Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

58241865 .. 58243575

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTTTTAGAGCTAAAGTCAGTTGCTTTGGTTCTGAACCATAATGGGGTTGAAGAATTATCTGAAATAGGCCTTGAAATGTATCAGGCTTCAAAGGATGATATCACTGTGCATGCAGCTCTTGCAAAACCCCCATCCTCGGAATATGTGAATGTGCTGCGATGGTACAAACATATTGAGGCACTTCTGAGGATTTCTGGTGTTTCCGGAGAAGGTTGTGGTGTCACCATCAAGGGAGATGCTCCTGTCATAGCAGCTGAAACAAAGGCAAGTCTAGTCTCCCCCTTTTTTGACTGCTTATTTGGACGTCTGCTTTTAGCCTCAGCTGCTGAAGAAGATGATGATGATGTGGATCTTTTTGGTGAAGAAACCGAAGAGGAGAAGAAGGCTACTCAAGAACGTGCAGCCTCCATCAAGGCATCTGCAAAAAAGAAAGAGTCCAGCAAGTCGTCAGTTCTGATGGATGTCAAACCATGGGATGATGAAACAGACATGCAAAAGCTTTTGGAAGCAGTAAAAAGAGTTCAGATGGAAGGTTTGCATTGGGGAACATCCAAACTTGTACCTGTTGGGTACGGGATAAAGAAGCTGCAGATAATGCTAACAATTGTTGATGACCTGGTCTCTGTGGACACTCTCATTGAGGAACATCTCACAGTTGAACCGATTAATGAGTATGTCCAAAGCTGCGATATTGTAGCCTTCAACAAAATATGTGCGTATAGTTTCCTTGTACTTTTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

248

Amino Acids

27.38

Weight (kDa)

4.7

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	151 - 238	1.4e-31	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	206
AclWI	GGATC	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	4 cut(s)	167, 564, 575, 735
AfiI	CCNNNNNNNGG	2 cut(s)	46, 139
AgsI	TTSAA	5 cut(s)	53, 77, 93, 662, 706
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	7 cut(s)	13, 119, 257, 326, 502, 589, 687
AluI	AGCT	7 cut(s)	13, 119, 257, 326, 502, 589, 687
Alw26I	GTCTC	2 cut(s)	283, 628
AlwI	GGATC	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	7 cut(s)	116, 157, 254, 326, 404, 589, 687
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AseI	ATTAAT	1 cut(s)	669
AsuHPI	GGTGA	2 cut(s)	217, 374
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	7 cut(s)	128, 144, 266, 313, 416, 576, 674
BccI	CCATC	6 cut(s)	142, 156, 236, 419, 454, 523
BciT130I	CCWGG	1 cut(s)	620
BcoDI	GTCTC	2 cut(s)	283, 628
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	590
BisI	GCNGC	7 cut(s)	117, 158, 255, 327, 405, 590, 688
BlsI	GCNGC	7 cut(s)	118, 159, 256, 328, 406, 591, 689
Bme1390I	CCNGG	1 cut(s)	620
BmrFI	CCNGG	1 cut(s)	620
BmsI	GCATC	2 cut(s)	229, 428
Bpu10I	CCTNAGC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	2 cut(s)	138, 473
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 139
Bse8I	GATNNNNATC	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	138, 473
BseGI	GGATG	5 cut(s)	103, 134, 469, 484, 551
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	46, 139
BseMII	CTCAG	2 cut(s)	179, 336
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	7 cut(s)	128, 144, 266, 313, 416, 576, 674
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	46, 139
BsmAI	GTCTC	2 cut(s)	283, 628
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	628
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	473
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	180, 335
BspEI	TCCGGA	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	138, 473
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	109, 658
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	307
BstAPI	GCANNNNNTGC	2 cut(s)	122, 598
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	188, 322
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	5 cut(s)	103, 134, 469, 484, 551
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	283, 628
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 326, 598
BstNI	CCWGG	1 cut(s)	620
BstNSI	RCATGY	2 cut(s)	116, 496
BstSCI	CCNGG	1 cut(s)	618
BstSFI	CTRYAG	1 cut(s)	590
BstV1I	GCAGC	7 cut(s)	128, 144, 266, 313, 416, 576, 674
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	5 cut(s)	103, 134, 469, 484, 551
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	329
CsiI	ACCWGGT	1 cut(s)	618
Csp6I	GTAC	4 cut(s)	166, 563, 574, 734
CviAII	CATG	3 cut(s)	113, 474, 493
CviQI	GTAC	4 cut(s)	166, 563, 574, 734
DdeI	CTNAG	2 cut(s)	188, 322
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	628
Eco32I	GATATC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	618
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	3 cut(s)	116, 477, 496
FatI	CATG	3 cut(s)	112, 473, 492
Fnu4HI	GCNGC	7 cut(s)	117, 158, 255, 327, 405, 590, 688
FokI	GGATG	5 cut(s)	110, 121, 476, 491, 538
Fsp4HI	GCNGC	7 cut(s)	117, 158, 255, 327, 405, 590, 688
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	7 cut(s)	117, 158, 255, 327, 405, 590, 688
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	116, 477, 496
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	217, 374
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	6 cut(s)	36, 64, 142, 189, 459, 528
Hpy188III	TCNNGA	2 cut(s)	207, 395
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	4 cut(s)	206, 379, 527, 712
HpyCH4III	ACNGT	2 cut(s)	109, 658
HpyCH4IV	ACGT	2 cut(s)	307, 400
HpyCH4V	TGCA	9 cut(s)	112, 116, 125, 404, 425, 496, 541, 592, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 326, 598
HpyF3I	CTNAG	2 cut(s)	188, 322
HpySE526I	ACGT	2 cut(s)	307, 400
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	116, 477, 496
Kpn2I	TCCGGA	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	8 cut(s)	71, 183, 220, 258, 454, 579, 605, 632
Lsp1109I	GCAGC	7 cut(s)	128, 144, 266, 313, 416, 576, 674
LweI	GCATC	2 cut(s)	229, 428
MabI	ACCWGGT	1 cut(s)	618
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	2 cut(s)	307, 400
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	6 cut(s)	65, 344, 347, 377, 386, 394
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	2 cut(s)	56, 606
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	7 cut(s)	148, 172, 183, 331, 370, 418, 637
MroI	TCCGGA	1 cut(s)	206
MseI	TTAA	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	257, 326
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	620
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	3 cut(s)	122, 326, 598
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	116, 477, 496
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	2 cut(s)	116, 496
PaeI	GCATGC	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	72
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	7 cut(s)	118, 159, 256, 328, 406, 591, 689
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PshBI	ATTAAT	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	618
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PstI	CTGCAG	1 cut(s)	594
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	620
PvuII	CAGCTG	2 cut(s)	257, 326
RsaI	GTAC	4 cut(s)	167, 564, 575, 735
RsaNI	GTAC	4 cut(s)	166, 563, 574, 734
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	7 cut(s)	117, 158, 255, 327, 405, 590, 688
Sau3AI	GATC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	620
SexAI	ACCWGGT	1 cut(s)	618
SfaNI	GCATC	2 cut(s)	229, 428
SfcI	CTRYAG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	2 cut(s)	56, 606
SseBI	AGGCCT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	618
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	109, 658
TaiI	ACGT	2 cut(s)	310, 403
TasI	AATT	2 cut(s)	56, 606
TatI	WGTACW	1 cut(s)	733
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	7 cut(s)	116, 157, 254, 326, 404, 589, 687
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	620
VspI	ATTAAT	1 cut(s)	669
XceI	RCATGY	2 cut(s)	116, 496
XspI	CTAG	1 cut(s)	275
ZraI	GACGTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.