RchiOBHm_Chr7g0190381

Belongs to the EF-1-beta EF-1-delta family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003320
Physical Location & Seq
Reverse (-)
9475746 .. 9475895
150 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17003

Sequence Viewer

Length: 150 bp
ATGCTAACAATTGTTGATGACCTGGTCTCTGTGGACACTCTCATTGAGGAACATCTCACAGTTGAACCAATTAATGAGTATGTCCAAAGCTGCGATATTGTAGCCTTCAACAAAATATGTACGTATAGTTTCCCTGTACTTTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF1_GNE

Protein Analysis

49

Amino Acids

5.57

Weight (kDa)

4.05

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF1_GNE PF00736 2 - 39 8.4e-07 EF-1 guanine nucleotide exchange domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 121, 138
AgsI TTSAA 2 cut(s) 65, 109
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 90
AseI ATTAAT 1 cut(s) 72
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 31
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 31
BseBI CCWGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 61
BstBAI YACGTR 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSNI TACGTA 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 21
Csp6I GTAC 2 cut(s) 120, 137
CviJI RGCY 2 cut(s) 90, 104
CviKI_1 RGCY 2 cut(s) 90, 104
CviQI GTAC 2 cut(s) 120, 137
Eco105I TACGTA 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 21
FaiI YATR 3 cut(s) 81, 118, 126
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
FspEI CC 8 cut(s) 8, 17, 32, 35, 81, 98, 118, 146
GluI GCNGC 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 122
LpnPI CCDG 2 cut(s) 8, 35
Lsp1109I GCAGC 1 cut(s) 77
MabI ACCWGGT 1 cut(s) 21
MaeII ACGT 1 cut(s) 122
MfeI CAATTG 1 cut(s) 9
MluCI AATT 2 cut(s) 9, 69
MnlI CCTC 1 cut(s) 40
MseI TTAA 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 23
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 2 cut(s) 121, 138
RsaNI GTAC 2 cut(s) 120, 137
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 23
SetI ASST 3 cut(s) 24, 92, 125
SexAI ACCWGGT 1 cut(s) 21
SgeI CNNG 3 cut(s) 34, 35, 146
SnaBI TACGTA 1 cut(s) 123
Sse9I AATT 2 cut(s) 9, 69
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 125
TasI AATT 2 cut(s) 9, 69
TatI WGTACW 1 cut(s) 136
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 90
Tth111I GACNNNGTC 1 cut(s) 23
VspI ATTAAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.