Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000038.1

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1457

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000038.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

gtatcaggcttcaaaggatgatatcactgtgcttgcagctcttgcaaaacccccatcctcggaatatgtgaatgtgctgcgatgctggtgttgtagtggtgtttccggagaaggttgtggtgtcaccatcaagggagatgctcctgtcatagcagctgaaacaaaggcctcagctgctgaagaagatgatgatgatgtggatctttttggtgaagaaaccgaagaggagaagaaggctgctcaagaacgtgcagcctgcatcaaggcatctgcaaaaaaagagagcataatgctaacaagtgttgatgacctggtctctgtggacactctcattgaggaacatctcacagttgaaccaattaatgagtatgtccaaagctgcgatattgtaaccttcaacatgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

135

Amino Acids

14.49

Weight (kDa)

4.16

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	105
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	13, 354, 398
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	39, 156, 174, 379
AluI	AGCT	4 cut(s)	39, 156, 174, 379
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	177
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	7 cut(s)	36, 77, 153, 174, 237, 252, 379
AseI	ATTAAT	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	116, 222
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	7 cut(s)	48, 64, 161, 165, 224, 264, 366
BccI	CCATC	2 cut(s)	62, 135
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	320
BisI	GCNGC	7 cut(s)	37, 78, 154, 175, 238, 253, 380
BlsI	GCNGC	7 cut(s)	38, 79, 155, 176, 239, 254, 381
Bme1390I	CCNGG	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	4 cut(s)	72, 128, 268, 276
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	23, 54
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	7 cut(s)	48, 64, 161, 165, 224, 264, 366
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	320
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	183
BspEI	TCCGGA	1 cut(s)	105
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	29, 350
Bst6I	CTCTTC	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	34, 257
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	23, 54
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 174
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	7 cut(s)	48, 64, 161, 165, 224, 264, 366
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	23, 54
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	34, 257
CaiI	CAGNNNCTG	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	310
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	8 cut(s)	9, 39, 156, 168, 174, 237, 255, 379
CviKI_1	RGCY	8 cut(s)	9, 39, 156, 168, 174, 237, 255, 379
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	23
FaeI	CATG	1 cut(s)	404
FaiI	YATR	5 cut(s)	67, 150, 288, 370, 402
FatI	CATG	1 cut(s)	400
Fnu4HI	GCNGC	7 cut(s)	37, 78, 154, 175, 238, 253, 380
FokI	GGATG	2 cut(s)	30, 41
Fsp4HI	GCNGC	7 cut(s)	37, 78, 154, 175, 238, 253, 380
GluI	GCNGC	7 cut(s)	37, 78, 154, 175, 238, 253, 380
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	1 cut(s)	404
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	116, 222
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	2 cut(s)	106, 243
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	105, 227, 404
HpyCH4III	ACNGT	2 cut(s)	29, 350
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	5 cut(s)	36, 45, 252, 259, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 174
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	404
Kpn2I	TCCGGA	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	6 cut(s)	71, 119, 157, 269, 297, 324
Lsp1109I	GCAGC	7 cut(s)	48, 64, 161, 165, 224, 264, 366
LweI	GCATC	4 cut(s)	72, 128, 268, 276
MabI	ACCWGGT	1 cut(s)	310
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	122, 389
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	5 cut(s)	192, 195, 225, 234, 242
MflI	RGATCY	1 cut(s)	200
MluCI	AATT	1 cut(s)	358
MnlI	CCTC	4 cut(s)	68, 179, 218, 329
MroI	TCCGGA	1 cut(s)	105
MseI	TTAA	1 cut(s)	361
MspA1I	CMGCKG	2 cut(s)	156, 174
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	42, 174
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	312
PkrI	GCNGC	7 cut(s)	38, 79, 155, 176, 239, 254, 381
PshBI	ATTAAT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	312
PvuII	CAGCTG	2 cut(s)	156, 174
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	7 cut(s)	37, 78, 154, 175, 238, 253, 380
Sau3AI	GATC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	8 cut(s)	41, 116, 158, 176, 251, 313, 381, 396
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	4 cut(s)	72, 128, 268, 276
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	358
SseBI	AGGCCT	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	29, 350
TaiI	ACGT	1 cut(s)	251
TasI	AATT	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TscAI	CASTG	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	7 cut(s)	36, 77, 153, 174, 237, 252, 379
Tsp45I	GTSAC	1 cut(s)	122
TspRI	CASTG	1 cut(s)	32
Tth111I	GACNNNGTC	1 cut(s)	312
VspI	ATTAAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.