Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Reverse (-)

8458285 .. 8459554

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTTTTAGAGCTAAAGTCAGTTGCTTTGGTTCTGAACCATAATGGGGTTAAAGAATTATCTGAAATAGGCCTTGAAATGTATCAGGCTTCAAAGGATGATATCACTGTGCTTGCAGCTCTTGCAAAACCCCCATCCTCGGAATATGTGAATGTGCTGCGATGGTACAAACATATTGAGGCACTTCTGAGGATTTCTGGTGTTTCCGGAGAAGGTTGTGGTGTCACCATCAAGGGAGATGCTCCTGTCATAGCAGCTGAAACAAAGGCAACTGCTGAAGAAGATGATGATGATGTGGATCTTTTTGGTGAAGAAACCGAAGAGGAGAAGAAGGCTGCTCAAGAACGTGCAGCCTCCATCAAGGCATCTGCAAAAAAGAAAGAGTCCGGCAAGTCGTCAGTTCTGATGGATGTCAAAACCATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

142

Amino Acids

15.29

Weight (kDa)

4.85

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	206
AclWI	GGATC	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	46, 139
AgsI	TTSAA	2 cut(s)	77, 93
AluBI	AGCT	3 cut(s)	13, 119, 257
AluI	AGCT	3 cut(s)	13, 119, 257
AlwI	GGATC	1 cut(s)	306
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	5 cut(s)	116, 157, 254, 335, 350
AsuHPI	GGTGA	2 cut(s)	217, 320
BbvI	GCAGC	5 cut(s)	128, 144, 266, 322, 362
BccI	CCATC	5 cut(s)	142, 156, 236, 365, 400
BisI	GCNGC	5 cut(s)	117, 158, 255, 336, 351
BlsI	GCNGC	5 cut(s)	118, 159, 256, 337, 352
BmsI	GCATC	2 cut(s)	229, 374
BpuEI	CTTGAG	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	138, 420
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 139
Bse8I	GATNNNNATC	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	138, 420
BseGI	GGATG	3 cut(s)	103, 134, 415
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	46, 139
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	5 cut(s)	128, 144, 266, 322, 362
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	207, 387
BslI	CCNNNNNNNGG	2 cut(s)	46, 139
BsnI	GGCC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	420
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	206
BspPI	GGATC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	138, 420
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	103, 134, 415
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstV1I	GCAGC	5 cut(s)	128, 144, 266, 322, 362
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	103, 134, 415
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	421
CviJI	RGCY	7 cut(s)	13, 72, 89, 119, 257, 335, 353
CviKI_1	RGCY	7 cut(s)	13, 72, 89, 119, 257, 335, 353
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	297
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	424
FaiI	YATR	5 cut(s)	42, 147, 174, 251, 422
FatI	CATG	1 cut(s)	420
Fnu4HI	GCNGC	5 cut(s)	117, 158, 255, 336, 351
FokI	GGATG	3 cut(s)	110, 121, 422
Fsp4HI	GCNGC	5 cut(s)	117, 158, 255, 336, 351
GluI	GCNGC	5 cut(s)	117, 158, 255, 336, 351
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	207, 387
Hin1II	CATG	1 cut(s)	424
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	2 cut(s)	207, 387
HphI	GGTGA	2 cut(s)	217, 320
Hpy188I	TCNGA	5 cut(s)	36, 64, 142, 189, 405
Hpy188III	TCNNGA	2 cut(s)	207, 341
HpyAV	CCTTC	2 cut(s)	206, 325
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	116, 125, 350, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	424
Kpn2I	TCCGGA	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	5 cut(s)	71, 183, 220, 258, 400
Lsp1109I	GCAGC	5 cut(s)	128, 144, 266, 322, 362
LweI	GCATC	2 cut(s)	229, 374
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	290, 293, 323, 332, 340
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	148, 172, 183, 316, 364
MroI	TCCGGA	1 cut(s)	206
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	2 cut(s)	207, 387
MwoI	GCNNNNNNNGC	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	72
PkrI	GCNGC	5 cut(s)	118, 159, 256, 337, 352
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	5 cut(s)	117, 158, 255, 336, 351
Sau3AI	GATC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	392
SetI	ASST	5 cut(s)	15, 121, 217, 259, 349
SfaNI	GCATC	2 cut(s)	229, 374
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	56
SseBI	AGGCCT	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	349
TasI	AATT	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	5 cut(s)	116, 157, 254, 335, 350
Tsp45I	GTSAC	1 cut(s)	223
TspRI	CASTG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.