FvH4_5g31690

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001098
Physical Location & Seq
Reverse (-)
22842978 .. 22848173
5196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31690.t1

Sequence Viewer

Length: 1029 bp
ATGGATTCCTTGTATGCATTAAGCTTGTCTTTCGCTATCTTATGGCTTTCGCTTCTCCCCGTTCTCACTGCCTCAAACCTTAACCACTACATCACTCCAAACTTCACAGCCAACCGTATCCAATTCGTTGAGACTTCTGGCGCTTTCTTGGAATCTCTTAATGGCACTTTCCGAGCCTCTATCAGTACTGCAGATTCAATACAGTCGCTTTTCTACTTCTCTGTCATCCATGTGGCCTCTAACACCATCATCTGGTCAGCCAACCGCAACGCTCCCGTTTCATATTCTGCTATGCACTCACTCACCATCCATGGCCTTGGTATCACTGATGACTTGAACAGAGTTGTGTGGTCTACACCCTCATTCAACTCTAAGGTTGCTGCTCTCCAGCTTCTAGAAACCGGGAACCTCATCTTGGTTGATGCACACAATGTTTCTCTCTGGAACAGTTTTGATTCTCCAACAGATACTCTGATCATTGGACAAAGATTGTATCCTGGTCAATCATTGACTGCTGCTGTGGGAAACAACAACTTATCTGTCGGTGATTACAAGCTTGCAGTTACCAGTGAGGATTTGGTTCTGCGATGGAGGGGTCAAACTTATTGGAAACTATCCATGGAAAGCAAAGCTTTTAAGAATTCAGATACACCAGTTTCCTACGTGGAAATGAGTAGGACTGGTTTGTATTTGTTTGGGGCTGATGGCTTGAAGGCTGTGTTTCAAGTTTTCTTGGAACCCTCAGATACAAAGATTGCGAGGTTGGGATATGAAGGAATTTTCAGCATCATTAGCTTCATAGGAAGCAAGTGGGTGCAGGACTTTGTGAAGCCAGTTGATATCTGCCAACGTCCATTTACTTGTGGAAAACTGGGATTCTGCTCGAATCAGAGTCCGACGTGCATATGTCCAACAGGTTTCCATAATGGTGCTCAGGAGCATGATGCTTGTGTGCCAATACAAGACACCATCTCTTTGCCTTCTTCCTGTAATGGAAGTGGAAATACCATTTTCTATGCAAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin Pkinase

Protein Analysis

343

Amino Acids

37.47

Weight (kDa)

5.95

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 82 - 164 8.9e-16 D-mannose binding lectin
S_locus_glycop PF00954 252 - 308 3.4e-06 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 252
AccI GTMKAC 1 cut(s) 353
AciI CCGC 1 cut(s) 265
AcsI RAATTY 2 cut(s) 640, 777
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 252, 415
AgsI TTSAA 5 cut(s) 198, 337, 367, 712, 725
AjiI CACGTC 1 cut(s) 900
AjnI CCWGG 1 cut(s) 496
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 5 cut(s) 24, 391, 556, 632, 795
AluI AGCT 5 cut(s) 24, 391, 556, 632, 795
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 2 cut(s) 234, 313
ApeKI GCWGC 2 cut(s) 380, 515
ApoI RAATTY 2 cut(s) 640, 777
AspLEI GCGC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 295, 557
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BarI GAAGNNNNNNTAC 2 cut(s) 988, 1020
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 2 cut(s) 367, 502
BccI CCATC 5 cut(s) 254, 314, 582, 698, 977
BciT130I CCWGG 1 cut(s) 498
BciVI GTATCC 2 cut(s) 128, 504
BclI TGATCA 1 cut(s) 474
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 144
BfuI GTATCC 2 cut(s) 128, 504
BisI GCNGC 2 cut(s) 381, 516
BlsI GCNGC 2 cut(s) 382, 517
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 403, 498
BmgBI CACGTC 1 cut(s) 900
BmiI GGNNCC 2 cut(s) 407, 738
BmrFI CCNGG 2 cut(s) 403, 498
BmrI ACTGGG 1 cut(s) 881
BmsI GCATC 3 cut(s) 412, 795, 934
BmuI ACTGGG 1 cut(s) 881
BpmI CTGGAG 1 cut(s) 371
Bpu10I CCTNAGC 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 403
BsaAI YACGTR 1 cut(s) 664
BsaJI CCNNGG 3 cut(s) 310, 316, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 415
Bse118I RCCGGY 1 cut(s) 1023
Bse1I ACTGG 5 cut(s) 567, 653, 685, 833, 876
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 3 cut(s) 310, 316, 618
BseGI GGATG 2 cut(s) 225, 306
BseLI CCNNNNNNNGG 2 cut(s) 252, 415
BseMII CTCAG 2 cut(s) 756, 947
BseNI ACTGG 5 cut(s) 567, 653, 685, 833, 876
BseXI GCAGC 2 cut(s) 367, 502
BsgI GTGCAG 1 cut(s) 836
BshFI GGCC 2 cut(s) 236, 315
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 2 cut(s) 402, 1024
BslI CCNNNNNNNGG 2 cut(s) 252, 415
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 2 cut(s) 236, 315
Bsp1286I GDGCHC 1 cut(s) 934
Bsp143I GATC 1 cut(s) 474
Bsp19I CCATGG 2 cut(s) 310, 618
BspACI CCGC 1 cut(s) 265
BspANI GGCC 2 cut(s) 236, 315
BspCNI CTCAG 2 cut(s) 755, 946
BspLI GGNNCC 2 cut(s) 407, 738
BspMAI CTGCAG 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 1023
BsrI ACTGG 5 cut(s) 567, 653, 685, 833, 876
BssAI RCCGGY 1 cut(s) 1023
BssECI CCNNGG 3 cut(s) 310, 316, 618
BssMI GATC 1 cut(s) 474
BssT1I CCWWGG 3 cut(s) 310, 316, 618
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 3 cut(s) 116, 204, 449
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 2 cut(s) 558, 1021
BstDEI CTNAG 3 cut(s) 372, 742, 933
BstDSI CCRYGG 2 cut(s) 310, 618
BstF5I GGATG 2 cut(s) 225, 306
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 477
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 1 cut(s) 792
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 2 cut(s) 401, 496
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 367, 502
BstXI CCANNNNNNTGG 1 cut(s) 317
BsuI GTATCC 2 cut(s) 128, 504
BsuRI GGCC 2 cut(s) 236, 315
BtgI CCRYGG 2 cut(s) 310, 618
BtgZI GCGATG 1 cut(s) 601
BtrI CACGTC 1 cut(s) 900
BtsCI GGATG 2 cut(s) 225, 306
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 324, 574
Cac8I GCNNGC 2 cut(s) 558, 1021
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 1023
Csp6I GTAC 1 cut(s) 186
CviAII CATG 4 cut(s) 230, 311, 619, 941
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 3 cut(s) 372, 742, 933
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
Eco130I CCWWGG 3 cut(s) 310, 316, 618
Eco32I GATATC 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 496
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 3 cut(s) 310, 316, 618
EcoT22I ATGCAT 1 cut(s) 19
ErhI CCWWGG 3 cut(s) 310, 316, 618
FaeI CATG 4 cut(s) 233, 314, 622, 944
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 616, 648
FatI CATG 4 cut(s) 229, 310, 618, 940
FauNDI CATATG 1 cut(s) 905
FbaI TGATCA 1 cut(s) 474
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 381, 516
FokI GGATG 2 cut(s) 212, 293
Fsp4HI GCNGC 2 cut(s) 381, 516
FspBI CTAG 1 cut(s) 395
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 381, 516
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 236, 315
HapII CCGG 2 cut(s) 402, 1024
HhaI GCGC 1 cut(s) 143
Hin1II CATG 4 cut(s) 233, 314, 622, 944
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 3 cut(s) 22, 554, 630
HinfI GANTC 7 cut(s) 5, 152, 194, 455, 876, 886, 892
HpaII CCGG 2 cut(s) 402, 1024
HphI GGTGA 2 cut(s) 295, 557
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 6 cut(s) 173, 474, 646, 745, 891, 897
Hpy188III TCNNGA 3 cut(s) 395, 442, 935
Hpy8I GTNNAC 1 cut(s) 354
Hpy99I CGWCG 1 cut(s) 901
HpyAV CCTTC 3 cut(s) 706, 767, 990
HpyCH4III ACNGT 3 cut(s) 116, 204, 449
HpyCH4IV ACGT 3 cut(s) 663, 850, 899
HpyCH4V TGCA 8 cut(s) 17, 191, 295, 425, 560, 817, 903, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 792
HpyF3I CTNAG 3 cut(s) 372, 742, 933
HpySE526I ACGT 3 cut(s) 663, 850, 899
Hsp92II CATG 4 cut(s) 233, 314, 622, 944
HspAI GCGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 1 cut(s) 474
LmnI GCTCC 2 cut(s) 277, 937
Lsp1109I GCAGC 2 cut(s) 367, 502
LweI GCATC 3 cut(s) 412, 795, 934
MaeI CTAG 1 cut(s) 395
MaeII ACGT 3 cut(s) 663, 850, 899
MaeIII GTNAC 1 cut(s) 562
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 1 cut(s) 975
MhlI GDGCHC 1 cut(s) 934
MluCI AATT 3 cut(s) 122, 640, 777
MlyI GAGTC 1 cut(s) 901
MmeI TCCRAC 3 cut(s) 485, 920, 935
MnlI CCTC 9 cut(s) 82, 187, 247, 370, 419, 565, 585, 751, 753
Mph1103I ATGCAT 1 cut(s) 19
MseI TTAA 4 cut(s) 20, 81, 159, 636
MslI CAYNNNNRTG 2 cut(s) 230, 927
MspI CCGG 2 cut(s) 402, 1024
MspR9I CCNGG 2 cut(s) 403, 498
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 792
NciI CCSGG 1 cut(s) 403
NcoI CCATGG 2 cut(s) 310, 618
NdeI CATATG 1 cut(s) 905
NdeII GATC 1 cut(s) 474
NlaIII CATG 4 cut(s) 233, 314, 622, 944
NlaIV GGNNCC 2 cut(s) 407, 738
NsiI ATGCAT 1 cut(s) 19
PfeI GAWTC 6 cut(s) 5, 152, 194, 455, 876, 886
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 2 cut(s) 382, 517
PleI GAGTC 1 cut(s) 900
PpsI GAGTC 1 cut(s) 900
Ppu21I YACGTR 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 2 cut(s) 407, 738
PstI CTGCAG 1 cut(s) 193
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 2 cut(s) 230, 927
SaqAI TTAA 4 cut(s) 20, 81, 159, 636
SatI GCNGC 2 cut(s) 381, 516
Sau3AI GATC 1 cut(s) 474
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 1 cut(s) 901
ScrFI CCNGG 2 cut(s) 403, 498
SduI GDGCHC 1 cut(s) 934
SfaNI GCATC 3 cut(s) 412, 795, 934
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 230, 927
Sse9I AATT 3 cut(s) 122, 640, 777
SsiI CCGC 1 cut(s) 265
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 401, 496
StyI CCWWGG 3 cut(s) 310, 316, 618
TaaI ACNGT 3 cut(s) 116, 204, 449
TaiI ACGT 3 cut(s) 666, 853, 902
TaqI TCGA 1 cut(s) 884
TasI AATT 3 cut(s) 122, 640, 777
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 6 cut(s) 5, 152, 194, 455, 876, 886
Tru1I TTAA 4 cut(s) 20, 81, 159, 636
Tru9I TTAA 4 cut(s) 20, 81, 159, 636
TscAI CASTG 3 cut(s) 73, 331, 574
TseI GCWGC 2 cut(s) 380, 515
TspDTI ATGAA 3 cut(s) 270, 786, 787
TspRI CASTG 3 cut(s) 73, 331, 574
Van91I CCANNNNNTGG 1 cut(s) 252
XapI RAATTY 2 cut(s) 640, 777
XbaI TCTAGA 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 187
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.