Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

44616752 .. 44618143

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG401500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGACCTTTTCTCTTTCCATGGAAAATCTTCTGGTTCTTGTTATCTAGTTGAAAACAATTTGGGTTTCTTCATATACAGCTCTAGTAGCCAGGAAGATCGAATAGGGTACATAAAGGCGGTAGGGCCTTGGTCTGGTCATGAGAAACACAGTATTCCAGTGTTACATTTGGTAATGATAATGACTATGCTGTCAATCGTCATAGTGGTCATGAGACTCATATGGTGGAGAAAGAAAAAGCGTACTAGAGCAAGTGTAGATGTATGGAATTCATCTTCATCAGCAGAGCTTGAGATATCCTCTATTCCGGGTCTGCCCATTAGATTTAATTATGAAGAGCTTGTCACCGCATCTGAAAATTTTAAGATCCAAATTGGCAGTGGTGGCTTTAGTACTGTATATAAAGGTACTATACCAGACAAAAATGCAGTGGCTGTGAAAAAGATTACAAGTTTGGGTGTCCGAGGGAAGGAGGAGTTTTTTACTGAGACTGCAACAATGGGAATCATCTACCACATCAATCTGGTTAGTTTGAGAGGTTTCTGCATCCAAGGAAGCCAGTGTTTTCTAGTTTATGAGTATATGAATAGAGGTTCATTGGAGAAGGTTCTCTTTGGCAATGGCCCTGTTTTGGATTGGGAAAAGAGATATGGGATAGCGCTTGGAATGGCAAGGGGGCTTGCTTACTTGCACAGTGGATGCAATCCCAAGATAGGCAAATTACCTATAGCCGAACCTAGGATTGAAGCATTAGAATTCTTGCTGTCCTACGGTGGAAATTTCTCAGAGGCATCCAGCAAGCTAACAAAAGTGGGATGTCCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

275

Amino Acids

30.54

Weight (kDa)

8.98

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	122 - 232	1.9e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	123 - 232	1.3e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	190
AciI	CCGC	2 cut(s)	119, 348
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	4 cut(s)	268, 358, 755, 778
AfaI	GTAC	4 cut(s)	110, 244, 394, 409
AfeI	AGCGCT	1 cut(s)	660
AfiI	CCNNNNNNNGG	5 cut(s)	134, 469, 631, 713, 738
AgsI	TTSAA	2 cut(s)	53, 746
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	81, 289, 340, 802
AluI	AGCT	4 cut(s)	81, 289, 340, 802
Alw26I	GTCTC	2 cut(s)	208, 482
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	434
Aor51HI	AGCGCT	1 cut(s)	660
AoxI	GGCC	2 cut(s)	125, 622
ApoI	RAATTY	4 cut(s)	268, 358, 755, 778
Asp700I	GAANNNNTTC	1 cut(s)	28
AspA2I	CCTAGG	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	3 cut(s)	4, 125, 623
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	737
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	208, 482
BfaI	CTAG	5 cut(s)	47, 84, 246, 569, 738
BfmI	CTRYAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	662
BlnI	CCTAGG	1 cut(s)	737
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	92, 309
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 125, 623
BmrFI	CCNGG	2 cut(s)	92, 309
BmsI	GCATC	4 cut(s)	359, 555, 689, 800
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	309
BsaJI	CCNNGG	5 cut(s)	19, 128, 463, 550, 737
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 469, 631, 713, 738
Bse1I	ACTGG	2 cut(s)	158, 559
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	5 cut(s)	19, 128, 463, 550, 737
BseGI	GGATG	4 cut(s)	546, 704, 791, 821
BseLI	CCNNNNNNNGG	5 cut(s)	134, 469, 631, 713, 738
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	2 cut(s)	477, 798
BseNI	ACTGG	2 cut(s)	158, 559
BseRI	GAGGAG	1 cut(s)	488
BshFI	GGCC	2 cut(s)	127, 624
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	5 cut(s)	134, 469, 631, 713, 738
BsmAI	GTCTC	2 cut(s)	208, 482
BsnI	GGCC	2 cut(s)	127, 624
Bsp143I	GATC	2 cut(s)	97, 366
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	2 cut(s)	119, 348
BspANI	GGCC	2 cut(s)	127, 624
BspCNI	CTCAG	2 cut(s)	478, 797
BspHI	TCATGA	2 cut(s)	139, 210
BspPI	GGATC	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	158, 559
BssECI	CCNNGG	5 cut(s)	19, 128, 463, 550, 737
BssMI	GATC	2 cut(s)	97, 366
BssT1I	CCWWGG	4 cut(s)	19, 128, 550, 737
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	152, 397, 695, 773
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	681, 800
BstDEI	CTNAG	2 cut(s)	486, 784
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	4 cut(s)	546, 704, 791, 821
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	2 cut(s)	100, 369
BstMAI	GTCTC	2 cut(s)	208, 482
BstMBI	GATC	2 cut(s)	97, 366
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 384
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 307
BstSFI	CTRYAG	1 cut(s)	726
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	127, 624
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	4 cut(s)	546, 704, 791, 821
BtsI	GCAGTG	2 cut(s)	385, 435
BtsIMutI	CAGTG	5 cut(s)	165, 385, 435, 566, 700
Cac8I	GCNNGC	2 cut(s)	681, 800
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	2 cut(s)	139, 210
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	3 cut(s)	4, 125, 623
Csp6I	GTAC	4 cut(s)	109, 243, 393, 408
CviAII	CATG	3 cut(s)	20, 140, 211
CviQI	GTAC	4 cut(s)	109, 243, 393, 408
DdeI	CTNAG	2 cut(s)	486, 784
DpnI	GATC	2 cut(s)	99, 368
DpnII	GATC	2 cut(s)	97, 366
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	4 cut(s)	19, 128, 550, 737
Eco32I	GATATC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	2 cut(s)	268, 755
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	297
EcoT14I	CCWWGG	4 cut(s)	19, 128, 550, 737
ErhI	CCWWGG	4 cut(s)	19, 128, 550, 737
FaeI	CATG	3 cut(s)	23, 143, 214
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	3 cut(s)	19, 139, 210
FauNDI	CATATG	1 cut(s)	221
FokI	GGATG	3 cut(s)	533, 711, 778
FspBI	CTAG	5 cut(s)	47, 84, 246, 569, 738
GlaI	GCGC	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	127, 624
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	3 cut(s)	23, 143, 214
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HinfI	GANTC	2 cut(s)	216, 504
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	3 cut(s)	355, 464, 787
Hpy188III	TCNNGA	3 cut(s)	140, 211, 821
HpyAV	CCTTC	2 cut(s)	463, 598
HpyCH4III	ACNGT	4 cut(s)	152, 397, 695, 773
HpyCH4V	TGCA	5 cut(s)	428, 494, 546, 691, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 384
HpyF3I	CTNAG	2 cut(s)	486, 784
Hsp92II	CATG	3 cut(s)	23, 143, 214
HspAI	GCGC	1 cut(s)	659
Kzo9I	GATC	2 cut(s)	97, 366
LguI	GCTCTTC	1 cut(s)	330
LweI	GCATC	4 cut(s)	359, 555, 689, 800
MaeI	CTAG	5 cut(s)	47, 84, 246, 569, 738
MaeIII	GTNAC	2 cut(s)	162, 343
MalI	GATC	2 cut(s)	99, 368
MboI	GATC	2 cut(s)	97, 366
MboII	GAAGA	5 cut(s)	21, 61, 107, 267, 347
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	8 cut(s)	58, 268, 328, 358, 372, 719, 755, 778
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	310, 458, 466, 530, 584, 781
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	2 cut(s)	327, 363
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	92, 309
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	87, 384
NciI	CCSGG	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	221
NdeII	GATC	2 cut(s)	97, 366
NlaIII	CATG	3 cut(s)	23, 143, 214
NmuCI	GTSAC	1 cut(s)	343
PagI	TCATGA	2 cut(s)	139, 210
PciSI	GCTCTTC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	3 cut(s)	4, 125, 623
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	4 cut(s)	110, 244, 394, 409
RsaNI	GTAC	4 cut(s)	109, 243, 393, 408
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	327, 363
Sau3AI	GATC	2 cut(s)	97, 366
Sau96I	GGNCC	3 cut(s)	4, 125, 623
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	92, 309
SfaNI	GCATC	4 cut(s)	359, 555, 689, 800
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	8 cut(s)	58, 268, 328, 358, 372, 719, 755, 778
SsiI	CCGC	2 cut(s)	119, 348
SspMI	CTAG	5 cut(s)	47, 84, 246, 569, 738
StyD4I	CCNGG	2 cut(s)	90, 307
StyI	CCWWGG	4 cut(s)	19, 128, 550, 737
TaaI	ACNGT	4 cut(s)	152, 397, 695, 773
TaqI	TCGA	1 cut(s)	100
TasI	AATT	8 cut(s)	58, 268, 328, 358, 372, 719, 755, 778
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	2 cut(s)	327, 363
Tru9I	TTAA	2 cut(s)	327, 363
TscAI	CASTG	5 cut(s)	165, 385, 435, 566, 700
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	6 cut(s)	61, 261, 267, 348, 585, 599
TspRI	CASTG	5 cut(s)	165, 385, 435, 566, 700
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	4 cut(s)	268, 358, 755, 778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	5 cut(s)	47, 84, 246, 569, 738
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.