Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

10544614 .. 10545444

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAGAGCTTGTCACCGCAACTGAAGGTTTTAAGACCCAAAATTGGCAGTGGTGGCTTTGGTACTGTATTTAAAGGTACTATACCAGACAACAATGCAGTGGCTGTGAAAAAGATTACAAGTTTGGGAGTCCGAGGGAAGAAGGAGTTTTTAACGGAGACTGCAACAATGGGAAGCATCTACCACATCAATCTGGTTAGCTTGAGCAGTTTCTGCATCCAAGGAAGCCAGTGTTTTCTGGTTTATGAGTATATGAATAGAGGTTCATTGGAGAAGATTCTCTTTGGCATTGGCCCTGTTTTGGATTGGGAAAAAAGATATGGGATAGCGCTTGGAATGGCAAGGGGGCTTGCTTACTTGCACAGTGGATGCAATCCCAAGATAGTCCACTGTGACATCAAACCGGAAAACATACTTCTGCATGATGATTTACAAGTGAAGATATCAGACTTTGGGGTTTCCAAGTTTATAAGTTACAAAAAATCCAGACTATTGACGACACTTAGAGGAACTGGGGGATATCTTGCTCCTGAATGGCTTACTAGCTATGGCATCAGTGAAAAAATTGATGTATACAGTTATGGGATGGTGTTGCTAGAATTGGTGAGGGGAAGAAGAAATTGCTTGTTTCAAAGTAGTGGCATCAGAAATGATGACACTGATGGAAATGAAAAATGTTTCAATTCAATCAGTTCGGAAGAAAGAATGGTGTACTTCCCACAACTTGCACTCCAAATGCATAAGAAAATGAGGTACATGGAACTAGCTGACCCAAGGTTAGAGGGTCGTGTGAGGAGTGAGGAGGTTGAGAAGCTAGTGAGGGTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

277

Amino Acids

31.0

Weight (kDa)

9.26

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 227	1.5e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 206	1.1e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	4 cut(s)	64, 79, 713, 755
AfeI	AGCGCT	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	44, 301
AgsI	TTSAA	3 cut(s)	632, 682, 687
AluBI	AGCT	5 cut(s)	9, 201, 546, 767, 814
AluI	AGCT	5 cut(s)	9, 201, 546, 767, 814
Alw26I	GTCTC	1 cut(s)	152
AlwNI	CAGNNNCTG	2 cut(s)	104, 213
Aor51HI	AGCGCT	1 cut(s)	330
AoxI	GGCC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	6, 616
BccI	CCATC	2 cut(s)	580, 656
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	5 cut(s)	543, 596, 764, 815, 829
BfoI	RGCGCY	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	5 cut(s)	186, 225, 359, 561, 651
BmuI	ACTGGG	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	133, 220, 773
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 301
Bse1I	ACTGG	2 cut(s)	229, 517
BseDI	CCNNGG	3 cut(s)	133, 220, 773
BseGI	GGATG	3 cut(s)	216, 374, 591
BseLI	CCNNNNNNNGG	2 cut(s)	44, 301
BseNI	ACTGG	2 cut(s)	229, 517
BseRI	GAGGAG	2 cut(s)	808, 815
BshFI	GGCC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	44, 301
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	229, 517
BssECI	CCNNGG	3 cut(s)	133, 220, 773
BssNAI	GTATAC	1 cut(s)	574
BssT1I	CCWWGG	2 cut(s)	220, 773
Bst1107I	GTATAC	1 cut(s)	574
Bst4CI	ACNGT	4 cut(s)	67, 365, 392, 578
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	216, 374, 591
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 213
BstZ17I	GTATAC	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	216, 374, 591
BtsI	GCAGTG	2 cut(s)	55, 105
BtsIMutI	CAGTG	7 cut(s)	55, 105, 236, 370, 388, 562, 657
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	2 cut(s)	104, 213
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	4 cut(s)	63, 78, 712, 754
CviAII	CATG	2 cut(s)	422, 757
CviQI	GTAC	4 cut(s)	63, 78, 712, 754
DdeI	CTNAG	1 cut(s)	503
DraI	TTTAAA	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	220, 773
Eco32I	GATATC	2 cut(s)	444, 521
Eco47III	AGCGCT	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	44
EcoRV	GATATC	2 cut(s)	444, 521
EcoT14I	CCWWGG	2 cut(s)	220, 773
EcoT22I	ATGCAT	1 cut(s)	741
ErhI	CCWWGG	2 cut(s)	220, 773
FaeI	CATG	2 cut(s)	425, 760
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	2 cut(s)	421, 756
FblI	GTMKAC	1 cut(s)	573
FokI	GGATG	3 cut(s)	203, 381, 598
FspBI	CTAG	5 cut(s)	543, 596, 764, 815, 829
GlaI	GCGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	425, 760
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	2 cut(s)	129, 277
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	6, 616
Hpy166II	GTNNAC	3 cut(s)	388, 574, 712
Hpy188I	TCNGA	4 cut(s)	134, 448, 647, 697
Hpy188III	TCNNGA	2 cut(s)	486, 530
Hpy8I	GTNNAC	3 cut(s)	388, 574, 712
HpyAV	CCTTC	2 cut(s)	19, 136
HpyCH4III	ACNGT	4 cut(s)	67, 365, 392, 578
HpyCH4V	TGCA	8 cut(s)	98, 164, 216, 361, 372, 421, 728, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 213
HpyF3I	CTNAG	1 cut(s)	503
Hsp92II	CATG	2 cut(s)	425, 760
HspAI	GCGC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	9 cut(s)	99, 179, 224, 242, 309, 417, 498, 499, 543
LweI	GCATC	5 cut(s)	186, 225, 359, 561, 651
MaeI	CTAG	5 cut(s)	543, 596, 764, 815, 829
MaeIII	GTNAC	3 cut(s)	12, 392, 473
MboII	GAAGA	7 cut(s)	16, 151, 286, 451, 624, 627, 710
MluCI	AATT	5 cut(s)	42, 564, 599, 619, 682
MlyI	GAGTC	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	741
MseI	TTAA	3 cut(s)	32, 72, 152
MspI	CCGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	54, 213
NlaIII	CATG	2 cut(s)	425, 760
NmuCI	GTSAC	2 cut(s)	12, 392
NsiI	ATGCAT	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PsiI	TTATAA	1 cut(s)	470
PspPI	GGNCC	1 cut(s)	293
PstNI	CAGNNNCTG	2 cut(s)	104, 213
RsaI	GTAC	4 cut(s)	64, 79, 713, 755
RsaNI	GTAC	4 cut(s)	63, 78, 712, 754
SaqAI	TTAA	3 cut(s)	32, 72, 152
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	138
SfaNI	GCATC	5 cut(s)	186, 225, 359, 561, 651
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	5 cut(s)	42, 564, 599, 619, 682
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	5 cut(s)	543, 596, 764, 815, 829
StyI	CCWWGG	2 cut(s)	220, 773
TaaI	ACNGT	4 cut(s)	67, 365, 392, 578
TasI	AATT	5 cut(s)	42, 564, 599, 619, 682
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	3 cut(s)	32, 72, 152
Tru9I	TTAA	3 cut(s)	32, 72, 152
TscAI	CASTG	7 cut(s)	55, 105, 236, 370, 395, 562, 664
TseFI	GTSAC	2 cut(s)	12, 392
Tsp45I	GTSAC	2 cut(s)	12, 392
TspDTI	ATGAA	4 cut(s)	17, 255, 269, 684
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	7 cut(s)	55, 105, 236, 370, 395, 562, 664
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	5 cut(s)	543, 596, 764, 815, 829
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.