Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Forward (+)

17915831 .. 17916520

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCCGTTTCACCTTCTGCTAATAAGCTTTTACTCACCATCCATGGCCTTAGCATCACCAATGACTCAAACAACGTTTTATGGACCACACCCTTATTGAACTCTCCTGTTACTGCTCTCCAGCTTTTGGAAACTGGGAACCTGGTCTTGGTTGATGCTCAAAATGTGACTCTCTGGGAGAGTTTTGAGCACCCTACAGATACCCTTGTCATGGGTCAAAGATTGCATGTTGGTAGATCTTTGGTTGCACCCAGGGCCCAGAACAAGAGTGATTATAGTCTTACACTTACCAGTGAGGATCTGGTGCTTCAGTGGGAGAGCCAGACTTACTGGAAATTATCCACGGACACAGATGCTACCAAGTACTCAAGTGTGCCAGTGCCCTTTATGACAATGAATGGAACTGGTTTGTATCTACTTGGGGATAATGGCTCAGAAGTAGTTTTTCATCTTCTATTGGAACTCTCAGATATGAGCTTTGCCAGTTTGGATTCTGGTTTGACAATCATCAGCTCGAATATGTCATGGTCCTCCAGCATTGATAAGTGCCAATATCCACTCCCTAGTGGAAAAATGGGATTATGTTCAGATCAGATGTGTACATGTCCAACTGGTTTCTCGTATGTTGATCCAGAGAAAGACATTGAGTGTGAAACTGAAAGAGACACTGTCTTTGCCTTCTGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

229

Amino Acids

25.2

Weight (kDa)

4.36

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	2 - 77	1e-12	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	127
AclI	AACGTT	1 cut(s)	75
AclWI	GGATC	2 cut(s)	306, 623
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	365, 601
AfiI	CCNNNNNNNGG	3 cut(s)	127, 148, 211
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	141, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	4 cut(s)	28, 124, 477, 513
AluI	AGCT	4 cut(s)	28, 124, 477, 513
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	306, 623
AoxI	GGCC	2 cut(s)	46, 255
ApaI	GGGCCC	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
AspS9I	GGNCC	4 cut(s)	84, 255, 256, 528
AsuHPI	GGTGA	3 cut(s)	3, 28, 49
AvaII	GGWCC	2 cut(s)	84, 528
BaeGI	GKGCMC	2 cut(s)	259, 384
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	143, 253
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	195
BglII	AGATCT	1 cut(s)	236
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	143, 253
Bme18I	GGWCC	2 cut(s)	84, 528
BmgT120I	GGNCC	4 cut(s)	84, 255, 256, 528
BmiI	GGNNCC	2 cut(s)	140, 257
BmrFI	CCNGG	2 cut(s)	143, 253
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	63, 145, 343
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	2 cut(s)	104, 517
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	352
BsaJI	CCNNGG	4 cut(s)	43, 251, 252, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 148, 211
Bse1I	ACTGG	7 cut(s)	139, 291, 335, 377, 409, 483, 616
BseBI	CCWGG	2 cut(s)	143, 253
BseDI	CCNNGG	4 cut(s)	43, 251, 252, 342
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	127, 148, 211
BseMII	CTCAG	2 cut(s)	447, 480
BseNI	ACTGG	7 cut(s)	139, 291, 335, 377, 409, 483, 616
BseSI	GKGCMC	2 cut(s)	259, 384
BshFI	GGCC	2 cut(s)	48, 257
BsiHKAI	GWGCWC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	127, 148, 211
BsmAI	GTCTC	1 cut(s)	657
BsnI	GGCC	2 cut(s)	48, 257
Bsp120I	GGGCCC	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	192, 259, 384
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	236, 298, 589, 628
Bsp19I	CCATGG	1 cut(s)	43
BspANI	GGCC	2 cut(s)	48, 257
BspCNI	CTCAG	2 cut(s)	446, 479
BspLI	GGNNCC	2 cut(s)	140, 257
BspPI	GGATC	2 cut(s)	306, 623
BsrGI	TGTACA	1 cut(s)	599
BsrI	ACTGG	7 cut(s)	139, 291, 335, 377, 409, 483, 616
BssECI	CCNNGG	4 cut(s)	43, 251, 252, 342
BssMI	GATC	4 cut(s)	236, 298, 589, 628
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	143, 253
Bst4CI	ACNGT	1 cut(s)	670
BstAUI	TGTACA	1 cut(s)	599
BstDEI	CTNAG	3 cut(s)	50, 433, 466
BstDSI	CCRYGG	2 cut(s)	43, 342
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	4 cut(s)	239, 301, 592, 631
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	4 cut(s)	236, 298, 589, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	143, 253
BstNSI	RCATGY	2 cut(s)	230, 606
BstSCI	CCNGG	2 cut(s)	141, 251
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	2 cut(s)	259, 384
BstX2I	RGATCY	2 cut(s)	236, 298
BstYI	RGATCY	2 cut(s)	236, 298
BsuRI	GGCC	2 cut(s)	48, 257
BtgI	CCRYGG	2 cut(s)	43, 342
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	4 cut(s)	298, 317, 384, 666
Cfr13I	GGNCC	4 cut(s)	84, 255, 256, 528
CsiI	ACCWGGT	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	364, 600
CviAII	CATG	5 cut(s)	44, 211, 227, 525, 603
CviJI	RGCY	8 cut(s)	28, 48, 124, 257, 321, 432, 477, 513
CviKI_1	RGCY	8 cut(s)	28, 48, 124, 257, 321, 432, 477, 513
CviQI	GTAC	2 cut(s)	364, 600
DdeI	CTNAG	3 cut(s)	50, 433, 466
DpnI	GATC	4 cut(s)	238, 300, 591, 630
DpnII	GATC	4 cut(s)	236, 298, 589, 628
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	84, 528
Eco57I	CTGAAG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	141, 251
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	5 cut(s)	47, 214, 230, 528, 606
FatI	CATG	5 cut(s)	43, 210, 226, 524, 602
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	259
FspBI	CTAG	1 cut(s)	564
GsuI	CTGGAG	2 cut(s)	104, 517
HaeIII	GGCC	2 cut(s)	48, 257
Hin1II	CATG	5 cut(s)	47, 214, 230, 528, 606
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	65, 169, 491
HphI	GGTGA	3 cut(s)	3, 28, 49
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	4 cut(s)	436, 469, 589, 594
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	1 cut(s)	600
HpyAV	CCTTC	2 cut(s)	24, 688
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	226, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	50, 433, 466
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	5 cut(s)	47, 214, 230, 528, 606
Kzo9I	GATC	4 cut(s)	236, 298, 589, 628
LweI	GCATC	3 cut(s)	63, 145, 343
MabI	ACCWGGT	1 cut(s)	141
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	109, 166
MalI	GATC	4 cut(s)	238, 300, 591, 630
MboI	GATC	4 cut(s)	236, 298, 589, 628
MboII	GAAGA	1 cut(s)	443
MflI	RGATCY	2 cut(s)	236, 298
MhlI	GDGCHC	3 cut(s)	192, 259, 384
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	59, 163
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	2 cut(s)	289, 541
MspR9I	CCNGG	2 cut(s)	143, 253
MvaI	CCWGG	2 cut(s)	143, 253
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	4 cut(s)	236, 298, 589, 628
NlaIII	CATG	5 cut(s)	47, 214, 230, 528, 606
NlaIV	GGNNCC	2 cut(s)	140, 257
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	2 cut(s)	230, 606
PasI	CCCWGGG	1 cut(s)	252
PciI	ACATGT	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	668
PflMI	CCANNNNNTGG	1 cut(s)	127
PleI	GAGTC	2 cut(s)	59, 163
PpsI	GAGTC	2 cut(s)	59, 163
PscI	ACATGT	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	141, 251
PspGI	CCWGG	2 cut(s)	141, 251
PspN4I	GGNNCC	2 cut(s)	140, 257
PspOMI	GGGCCC	1 cut(s)	255
PspPI	GGNCC	4 cut(s)	84, 255, 256, 528
PsuI	RGATCY	2 cut(s)	236, 298
PsyI	GACNNNGTC	1 cut(s)	668
RsaI	GTAC	2 cut(s)	365, 601
RsaNI	GTAC	2 cut(s)	364, 600
Sau3AI	GATC	4 cut(s)	236, 298, 589, 628
Sau96I	GGNCC	4 cut(s)	84, 255, 256, 528
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	2 cut(s)	59, 163
ScrFI	CCNGG	2 cut(s)	143, 253
SduI	GDGCHC	3 cut(s)	192, 259, 384
SetI	ASST	7 cut(s)	16, 30, 78, 126, 144, 479, 515
SexAI	ACCWGGT	1 cut(s)	141
SfaNI	GCATC	3 cut(s)	63, 145, 343
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	84, 528
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	1 cut(s)	335
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	141, 251
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	515
TasI	AATT	1 cut(s)	335
TatI	WGTACW	2 cut(s)	363, 599
TfiI	GAWTC	1 cut(s)	491
TscAI	CASTG	4 cut(s)	298, 317, 384, 673
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	410, 437
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	4 cut(s)	298, 317, 384, 673
Tth111I	GACNNNGTC	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	84, 528
XceI	RCATGY	2 cut(s)	230, 606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	1 cut(s)	564
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.