Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232247.1

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 591

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232247.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 590 bp

atgggatccttcttgttcatccctgctgttttcttattctttgttgctgtctctagtatttctttcacagagtttatatacccgcctttctctgcttcacactatcaattcattgacaacgctggtaccttcttgtcttctcgaaatgggacattcagagctgctatgtttaatcctgatgctcagtccaacttctacttgagcatcatccatgaggcatccaataccgtcatctggtctgccaatcgcaatgctgccatctctagttctggtgagatgagtctcacggttgaaggacttagcatttcagatgcggatggcaatcccgtttggtcaactccagcattgaagtcatcagtgcatgcattattgctgaatgaagtagggaatctaatccttcttgatcaattcaatggttctctttgggaaagttttcactacccaacagacacgattgttattggacaagagttatcagttgggtccattctggccagttccagtggcgcaacaaacttttcaaccggtgattacaagctcgtactgagttcttctgatgtgatacttcaatggcatgggcagacatattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

196

Amino Acids

21.24

Weight (kDa)

4.54

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	2 cut(s)	83, 314
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	492
AfaI	GTAC	2 cut(s)	127, 543
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	293, 349, 412, 522, 569
AluBI	AGCT	2 cut(s)	161, 538
AluI	AGCT	2 cut(s)	161, 538
Alw26I	GTCTC	2 cut(s)	55, 287
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	161, 254
AsiGI	ACCGGT	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	483
AsuHPI	GGTGA	2 cut(s)	284, 539
AvaII	GGWCC	1 cut(s)	483
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BalI	TGGCCA	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	148, 241
BccI	CCATC	2 cut(s)	266, 311
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	55, 287
BfaI	CTAG	2 cut(s)	54, 264
BisI	GCNGC	2 cut(s)	162, 255
BlsI	GCNGC	2 cut(s)	163, 256
Bme18I	GGWCC	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	3 cut(s)	7, 127, 484
BmsI	GCATC	4 cut(s)	169, 213, 227, 301
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	2 cut(s)	495, 501
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	321
BseGI	GGATG	4 cut(s)	18, 207, 218, 322
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	197, 536
BseNI	ACTGG	2 cut(s)	495, 501
BseXI	GCAGC	2 cut(s)	148, 241
BshFI	GGCC	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	55, 287
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	5, 403
BspACI	CCGC	2 cut(s)	83, 314
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	196, 537
BspLI	GGNNCC	3 cut(s)	7, 127, 484
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	495, 501
BssAI	RCCGGY	1 cut(s)	524
BssMI	GATC	2 cut(s)	5, 403
Bst4CI	ACNGT	2 cut(s)	229, 289
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	183, 299, 545
BstF5I	GGATG	4 cut(s)	18, 207, 218, 322
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	8, 406
BstMAI	GTCTC	2 cut(s)	55, 287
BstMBI	GATC	2 cut(s)	5, 403
BstNSI	RCATGY	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	148, 241
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	494
BtsCI	GGATG	4 cut(s)	18, 207, 218, 322
BtsIMutI	CAGTG	2 cut(s)	363, 508
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	126, 542
CspAI	ACCGGT	1 cut(s)	524
CviAII	CATG	3 cut(s)	212, 362, 575
CviJI	RGCY	3 cut(s)	161, 494, 538
CviKI_1	RGCY	3 cut(s)	161, 494, 538
CviQI	GTAC	2 cut(s)	126, 542
DdeI	CTNAG	3 cut(s)	183, 299, 545
DpnI	GATC	2 cut(s)	7, 405
DpnII	GATC	2 cut(s)	5, 403
EaeI	YGGCCR	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	3 cut(s)	215, 365, 578
FaiI	YATR	7 cut(s)	77, 79, 167, 213, 363, 576, 586
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	211, 361, 574
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	162, 255
FokI	GGATG	4 cut(s)	5, 194, 205, 329
Fsp4HI	GCNGC	2 cut(s)	162, 255
FspBI	CTAG	2 cut(s)	54, 264
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	2 cut(s)	162, 255
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	3 cut(s)	215, 365, 578
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	280, 388
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	284, 539
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	3 cut(s)	158, 310, 556
Hpy188III	TCNNGA	3 cut(s)	141, 176, 401
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	4 cut(s)	19, 139, 287, 407
HpyCH4III	ACNGT	2 cut(s)	229, 289
HpyCH4V	TGCA	2 cut(s)	361, 365
HpyF3I	CTNAG	3 cut(s)	183, 299, 545
Hsp92II	CATG	3 cut(s)	215, 365, 578
HspAI	GCGC	1 cut(s)	507
KpnI	GGTACC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	5, 403
Lsp1109I	GCAGC	2 cut(s)	148, 241
LweI	GCATC	4 cut(s)	169, 213, 227, 301
MaeI	CTAG	2 cut(s)	54, 264
MalI	GATC	2 cut(s)	7, 405
MboI	GATC	2 cut(s)	5, 403
MboII	GAAGA	2 cut(s)	129, 543
MflI	RGATCY	1 cut(s)	5
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	2 cut(s)	107, 407
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	1 cut(s)	208
Mox20I	TGGCCA	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	494
MspI	CCGG	1 cut(s)	525
NdeII	GATC	2 cut(s)	5, 403
NlaIII	CATG	3 cut(s)	215, 365, 578
NlaIV	GGNNCC	3 cut(s)	7, 127, 484
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	163, 256
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	7, 127, 484
PspPI	GGNCC	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	2 cut(s)	127, 543
RsaNI	GTAC	2 cut(s)	126, 542
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	162, 255
Sau3AI	GATC	2 cut(s)	5, 403
Sau96I	GGNCC	1 cut(s)	483
SchI	GAGTC	1 cut(s)	289
SetI	ASST	3 cut(s)	131, 163, 540
SfaNI	GCATC	4 cut(s)	169, 213, 227, 301
SinI	GGWCC	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	107, 407
SsiI	CCGC	2 cut(s)	83, 314
SspMI	CTAG	2 cut(s)	54, 264
TaaI	ACNGT	2 cut(s)	229, 289
TaqI	TCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	107, 407
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	363, 508
TseI	GCWGC	2 cut(s)	161, 254
TspDTI	ATGAA	3 cut(s)	7, 100, 393
TspRI	CASTG	2 cut(s)	363, 508
VpaK11BI	GGWCC	1 cut(s)	483
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	2 cut(s)	54, 264
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.