Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

51546673 .. 51547380

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG393600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCACTTTCAAAGCCTTTGTCACTAAAGAAAGTTTGTATAGAGGTTCCTACTTCTCTGTCATCCACACAGCCTCTAACACTACCATCTGGCAGGGCAACGAAAAAAATACCCATTTCACCTTCTGCTAAGGTTTTACTAACCATCCATGGCCTTAGCATCACCAATGACTCAAACAACGTTGTATGGTCCACACTGTTATTGAACTCTCCGGTTACTGCTCTCCAGCTTTTAGAAACTGGGAACCTGGTCTTAGTTGATGCACAAAATGTGACTCTCTGGGAGAGTTTTGAGCACCCTACAGATACAGTTGTCATGGGTCAAAGATTGCATGTTGGTAAATCTCTGCTTACAGTTACCAGTGAGGACCTGGTGCTTCAGTGGAAGGGCCGGACTTATTGGAAATTATCCATGGGGACAAATGCTATCAAGTACGCAAGTGTGCCAGTGTCCTTTATGATAATGAATGGAACTGGTTTGTATCTGCTTGGGAATAATGGCTCAGAAGTAGTTTTTCATTTTCTGTTGGAACTCTCAGATATGAGCTTTGCCAAATTGGACTCTAGTGGGACGTTACTCATATCGAATATCTTTGAGAGAATTTGGTTTTCCGACAATGATAAGTGCCAATATCCAAAAGCTTGTGGAAAAAATGGGATTATGCACCAATCAGATGTGTACATGTCCAACTGGTTTCTCCCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop Transgly

Protein Analysis

235

Amino Acids

25.91

Weight (kDa)

7.68

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	36 - 114	5.2e-13	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	434, 680
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	2 cut(s)	12, 205
AjnI	CCWGG	2 cut(s)	246, 369
AluBI	AGCT	3 cut(s)	229, 546, 641
AluI	AGCT	3 cut(s)	229, 546, 641
Alw21I	GWGCWC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	151, 388
ApoI	RAATTY	1 cut(s)	600
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	189, 367, 388
AsuHPI	GGTGA	2 cut(s)	111, 154
AvaII	GGWCC	2 cut(s)	189, 367
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
Bbv12I	GWGCWC	1 cut(s)	297
BccI	CCATC	2 cut(s)	94, 152
BciT130I	CCWGG	2 cut(s)	248, 371
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	248, 371
Bme18I	GGWCC	2 cut(s)	189, 367
BmgT120I	GGNCC	3 cut(s)	189, 367, 388
BmiI	GGNNCC	2 cut(s)	48, 245
BmrFI	CCNGG	2 cut(s)	248, 371
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	2 cut(s)	168, 250
BmuI	ACTGGG	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	2 cut(s)	129, 155
BsaJI	CCNNGG	2 cut(s)	148, 411
BsaWI	WCCGGW	1 cut(s)	211
Bse1I	ACTGG	5 cut(s)	244, 360, 446, 478, 695
BseBI	CCWGG	2 cut(s)	248, 371
BseDI	CCNNGG	2 cut(s)	148, 411
BseGI	GGATG	2 cut(s)	62, 144
BseMII	CTCAG	2 cut(s)	516, 549
BseNI	ACTGG	5 cut(s)	244, 360, 446, 478, 695
BshFI	GGCC	2 cut(s)	153, 390
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	212, 391
BslFI	GGGAC	2 cut(s)	430, 583
BsmFI	GGGAC	2 cut(s)	430, 583
BsnI	GGCC	2 cut(s)	153, 390
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	678
Bsp19I	CCATGG	2 cut(s)	148, 411
BspANI	GGCC	2 cut(s)	153, 390
BspCNI	CTCAG	2 cut(s)	515, 548
BspLI	GGNNCC	2 cut(s)	48, 245
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	5 cut(s)	244, 360, 446, 478, 695
BssECI	CCNNGG	2 cut(s)	148, 411
BssT1I	CCWWGG	2 cut(s)	148, 411
Bst2UI	CCWGG	2 cut(s)	248, 371
Bst4CI	ACNGT	3 cut(s)	198, 310, 355
BstAUI	TGTACA	1 cut(s)	678
BstDEI	CTNAG	5 cut(s)	129, 155, 253, 502, 535
BstDSI	CCRYGG	2 cut(s)	148, 411
BstF5I	GGATG	2 cut(s)	62, 144
BstNI	CCWGG	2 cut(s)	248, 371
BstNSI	RCATGY	2 cut(s)	335, 685
BstSCI	CCNGG	2 cut(s)	246, 369
BstSFI	CTRYAG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	153, 390
BtgI	CCRYGG	2 cut(s)	148, 411
BtsCI	GGATG	2 cut(s)	62, 144
BtsIMutI	CAGTG	4 cut(s)	194, 367, 386, 453
Cfr13I	GGNCC	3 cut(s)	189, 367, 388
CsiI	ACCWGGT	2 cut(s)	246, 369
Csp6I	GTAC	2 cut(s)	433, 679
CviAII	CATG	6 cut(s)	149, 316, 332, 412, 682, 702
CviJI	RGCY	8 cut(s)	16, 73, 153, 229, 390, 501, 546, 641
CviKI_1	RGCY	8 cut(s)	16, 73, 153, 229, 390, 501, 546, 641
CviQI	GTAC	2 cut(s)	433, 679
DdeI	CTNAG	5 cut(s)	129, 155, 253, 502, 535
Eco130I	CCWWGG	2 cut(s)	148, 411
Eco47I	GGWCC	2 cut(s)	189, 367
Eco57I	CTGAAG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	246, 369
EcoT14I	CCWWGG	2 cut(s)	148, 411
ErhI	CCWWGG	2 cut(s)	148, 411
FaeI	CATG	6 cut(s)	152, 319, 335, 415, 685, 705
FaqI	GGGAC	2 cut(s)	430, 583
FatI	CATG	6 cut(s)	148, 315, 331, 411, 681, 701
FokI	GGATG	2 cut(s)	49, 131
FspBI	CTAG	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	153, 390
HapII	CCGG	2 cut(s)	212, 391
Hin1II	CATG	6 cut(s)	152, 319, 335, 415, 685, 705
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	3 cut(s)	170, 274, 560
HpaII	CCGG	2 cut(s)	212, 391
HphI	GGTGA	2 cut(s)	111, 154
Hpy166II	GTNNAC	2 cut(s)	192, 679
Hpy188I	TCNGA	4 cut(s)	505, 538, 613, 673
Hpy8I	GTNNAC	2 cut(s)	192, 679
HpyAV	CCTTC	2 cut(s)	132, 379
HpyCH4III	ACNGT	3 cut(s)	198, 310, 355
HpyCH4IV	ACGT	2 cut(s)	180, 572
HpyCH4V	TGCA	3 cut(s)	263, 331, 664
HpyF3I	CTNAG	5 cut(s)	129, 155, 253, 502, 535
HpySE526I	ACGT	2 cut(s)	180, 572
Hsp92II	CATG	6 cut(s)	152, 319, 335, 415, 685, 705
LweI	GCATC	2 cut(s)	168, 250
MabI	ACCWGGT	2 cut(s)	246, 369
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	2 cut(s)	180, 572
MaeIII	GTNAC	5 cut(s)	21, 214, 271, 355, 573
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	3 cut(s)	404, 554, 600
MlyI	GAGTC	3 cut(s)	164, 268, 554
MmeI	TCCRAC	2 cut(s)	507, 636
MnlI	CCTC	3 cut(s)	37, 84, 358
MspI	CCGG	2 cut(s)	212, 391
MspR9I	CCNGG	2 cut(s)	248, 371
MvaI	CCWGG	2 cut(s)	248, 371
NcoI	CCATGG	2 cut(s)	148, 411
NlaIII	CATG	6 cut(s)	152, 319, 335, 415, 685, 705
NlaIV	GGNNCC	2 cut(s)	48, 245
NmuCI	GTSAC	2 cut(s)	21, 271
NspI	RCATGY	2 cut(s)	335, 685
PciI	ACATGT	1 cut(s)	681
PleI	GAGTC	3 cut(s)	164, 268, 554
PpsI	GAGTC	3 cut(s)	164, 268, 554
PpuMI	RGGWCCY	1 cut(s)	367
PscI	ACATGT	1 cut(s)	681
Psp1406I	AACGTT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	246, 369
PspGI	CCWGG	2 cut(s)	246, 369
PspN4I	GGNNCC	2 cut(s)	48, 245
PspPI	GGNCC	3 cut(s)	189, 367, 388
PspPPI	RGGWCCY	1 cut(s)	367
RsaI	GTAC	2 cut(s)	434, 680
RsaNI	GTAC	2 cut(s)	433, 679
Sau96I	GGNCC	3 cut(s)	189, 367, 388
SchI	GAGTC	3 cut(s)	164, 268, 554
ScrFI	CCNGG	2 cut(s)	248, 371
SduI	GDGCHC	1 cut(s)	297
SexAI	ACCWGGT	2 cut(s)	246, 369
SfaNI	GCATC	2 cut(s)	168, 250
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	189, 367
Sse9I	AATT	3 cut(s)	404, 554, 600
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	246, 369
StyI	CCWWGG	2 cut(s)	148, 411
TaaI	ACNGT	3 cut(s)	198, 310, 355
TaiI	ACGT	2 cut(s)	183, 575
TaqI	TCGA	1 cut(s)	584
TasI	AATT	3 cut(s)	404, 554, 600
TatI	WGTACW	1 cut(s)	678
TscAI	CASTG	4 cut(s)	201, 367, 386, 453
TseFI	GTSAC	2 cut(s)	21, 271
Tsp45I	GTSAC	2 cut(s)	21, 271
TspDTI	ATGAA	2 cut(s)	479, 506
TspRI	CASTG	4 cut(s)	201, 367, 386, 453
VpaK11BI	GGWCC	2 cut(s)	189, 367
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	2 cut(s)	335, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.