Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

48152106 .. 48153575

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGACCTTTGGTGAGGAAGGTCTATTAGGGTACATTAAGGCTATCTCAACTGTGTCTGTAATCCCTGCTGAGAATAAGAAACATGGTTTAGCAGTATCAAGTTTGGTGGTGATAATAACCTTTTCAGGGTTCGTGCTAGCCACCATGCTGCTCATGATCATAATATGGTTGAGAAAGAAACGGTATGATAGAATGACCTTTGGACGTTTGAATTCATTCTCAACAGCAGATCTTGAGGTGGTCTCCATCCCAGGTTTGCCAGTAAGATTTAGTTATGAAGAACTTGTTGCTGCAACTGAAAATTTTAATAATCAAATTGGCAGTGGTGGATTTGGTACCGTGTATAAGGGCATTATAGCGGACAAGACTGTAGTGGCAGTGAAGAAGATCAGTAGTTTGGGAGTCCGAGGGAAGGTGGAATTTTGCAACGAGACTGCTTCAATTGGAAACATCCACCATGTCAATCTTGTCAAGTTAAGAGGTTTCTGCATCCATGGGAAGCAAATGGCAAAAGAGATACGAAATAGCGCTTGGAATGGCACGGGGTCTTGCTTACTTCCAGAAAACATTCTTTTGCATTCTGATTTTCAAGTCAAAATATCAGATTTTGGGCTAGCCAAGCTGCTAAGCCATGAAAATTCCAAACTATTGACGACACTGAGTGGAACTCGGGGCTATCTTGCACCTGAATGGCTCACTAGTCATGGAATCACCGATAAAACTGATGTATATAGCTATGGAATGGTTTTACTGGAACTGGTGAGGGGAAGAAGAAATTGCTTGTTTCAGTGCAGCAGCACTGAAAGTGATGTCAGTGAAGGAAATGGACCATCTTTCATTTCAACCAGTTGGGACCTTGGGATGGTGTATTTCCCTCTACTTGCACTAGAAATGCATAAGCAAAGAAGATATAAAGAACTAGCCGACCCGAGGCTAGAGGGTCGGGTGAGGATTGAGGAGGTAGAGACACTAGTGAGGGTAGCGTTAAGTTGTTTACATATAGTTCCAACACTAAGGCCAAGTATGACTAATGTGGTTGCTATGTTGGAAGGAAGATTACATATAGGGGAGCCTAGGGTTGAGGCACTAGAGTTCTTGCGATTGTATGGTGGGAAAACCACTGAGACATCCAGATTACTCAAAAGGATCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop Transgly

Protein Analysis

384

Amino Acids

42.59

Weight (kDa)

9.12

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	102 - 169	8.1e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	103 - 168	1e-06	Protein kinase domain
Pkinase	PF00069	187 - 346	1.2e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	188 - 346	7.8e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	1154
AcsI	RAATTY	4 cut(s)	211, 301, 419, 637
AdeI	CACNNNGTG	1 cut(s)	662
AfaI	GTAC	2 cut(s)	32, 337
AfeI	AGCGCT	1 cut(s)	529
AfiI	CCNNNNNNNGG	4 cut(s)	126, 412, 862, 930
AgsI	TTSAA	4 cut(s)	211, 441, 590, 843
AhlI	ACTAGT	2 cut(s)	698, 970
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	2 cut(s)	622, 735
AluI	AGCT	2 cut(s)	622, 735
Alw26I	GTCTC	4 cut(s)	247, 425, 959, 1118
AlwI	GGATC	1 cut(s)	1154
Ama87I	CYCGRG	2 cut(s)	669, 928
Aor51HI	AGCGCT	1 cut(s)	529
AoxI	GGCC	1 cut(s)	1016
ApeKI	GCWGC	5 cut(s)	148, 290, 622, 792, 795
ApoI	RAATTY	4 cut(s)	211, 301, 419, 637
Asp700I	GAANNNNTTC	2 cut(s)	215, 567
Asp718I	GGTACC	1 cut(s)	335
AspA2I	CCTAGG	1 cut(s)	1073
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	827, 853
AsuHPI	GGTGA	5 cut(s)	23, 121, 703, 772, 958
AsuNHI	GCTAGC	2 cut(s)	136, 613
AvaI	CYCGRG	2 cut(s)	669, 928
AvaII	GGWCC	2 cut(s)	827, 853
AvrII	CCTAGG	1 cut(s)	1073
BanI	GGYRCC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	1041, 1073
BbvI	GCAGC	5 cut(s)	135, 277, 609, 804, 807
BccI	CCATC	3 cut(s)	254, 838, 856
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	4 cut(s)	247, 425, 959, 1118
BcuI	ACTAGT	2 cut(s)	698, 970
BfaI	CTAG	9 cut(s)	137, 614, 699, 887, 920, 935, 971, 1074, 1088
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	531
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	5 cut(s)	149, 291, 623, 793, 796
BlnI	CCTAGG	1 cut(s)	1073
BlpI	GCTNAGC	1 cut(s)	626
BlsI	GCNGC	5 cut(s)	150, 292, 624, 794, 797
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	827, 853
BmeT110I	CYCGRG	2 cut(s)	669, 928
BmgT120I	GGNCC	2 cut(s)	827, 853
BmiI	GGNNCC	3 cut(s)	337, 854, 1071
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	498
BmtI	GCTAGC	2 cut(s)	140, 617
BplI	GAGNNNNNCTC	4 cut(s)	227, 259, 652, 684
Bpu1102I	GCTNAGC	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	6 cut(s)	250, 406, 493, 856, 929, 1073
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 412, 862, 930
Bse1I	ACTGG	4 cut(s)	260, 756, 762, 846
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	6 cut(s)	250, 406, 493, 856, 929, 1073
BseGI	GGATG	5 cut(s)	246, 450, 489, 867, 1127
BseLI	CCNNNNNNNGG	4 cut(s)	126, 412, 862, 930
BseMII	CTCAG	3 cut(s)	60, 650, 1113
BseNI	ACTGG	4 cut(s)	260, 756, 762, 846
BseRI	GAGGAG	1 cut(s)	971
BseXI	GCAGC	5 cut(s)	135, 277, 609, 804, 807
BsgI	GTGCAG	1 cut(s)	811
BshFI	GGCC	1 cut(s)	1018
BshNI	GGYRCC	1 cut(s)	335
BsiHKCI	CYCGRG	2 cut(s)	669, 928
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	4 cut(s)	126, 412, 862, 930
BsmAI	GTCTC	4 cut(s)	247, 425, 959, 1118
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	1018
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	2 cut(s)	669, 928
Bsp143I	GATC	4 cut(s)	156, 229, 387, 1146
Bsp1720I	GCTNAGC	1 cut(s)	626
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	1018
BspCNI	CTCAG	3 cut(s)	61, 651, 1114
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	337, 854, 1071
BspOI	GCTAGC	2 cut(s)	140, 617
BspPI	GGATC	1 cut(s)	1154
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	247
BsrI	ACTGG	4 cut(s)	260, 756, 762, 846
BssECI	CCNNGG	6 cut(s)	250, 406, 493, 856, 929, 1073
BssMI	GATC	4 cut(s)	156, 229, 387, 1146
BssT1I	CCWWGG	3 cut(s)	493, 856, 1073
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	52, 183, 340, 370
BstC8I	GCNNGC	2 cut(s)	138, 615
BstDEI	CTNAG	5 cut(s)	69, 626, 659, 1013, 1122
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	5 cut(s)	246, 450, 489, 867, 1127
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	4 cut(s)	159, 232, 390, 1149
BstMAI	GTCTC	4 cut(s)	247, 425, 959, 1118
BstMBI	GATC	4 cut(s)	156, 229, 387, 1146
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	5 cut(s)	135, 277, 609, 804, 807
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	1018
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	5 cut(s)	246, 450, 489, 867, 1127
BtsI	GCAGTG	2 cut(s)	328, 384
BtsIMutI	CAGTG	7 cut(s)	328, 384, 656, 794, 798, 820, 1119
Cac8I	GCNNGC	2 cut(s)	138, 615
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	827, 853
Csp6I	GTAC	2 cut(s)	31, 336
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	7 cut(s)	83, 145, 154, 458, 494, 632, 704
CviQI	GTAC	2 cut(s)	31, 336
DdeI	CTNAG	5 cut(s)	69, 626, 659, 1013, 1122
DpnI	GATC	4 cut(s)	158, 231, 389, 1148
DpnII	GATC	4 cut(s)	156, 229, 387, 1146
DraIII	CACNNNGTG	1 cut(s)	662
Eco130I	CCWWGG	3 cut(s)	493, 856, 1073
Eco31I	GGTCTC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	827, 853
Eco47III	AGCGCT	1 cut(s)	529
Eco88I	CYCGRG	2 cut(s)	669, 928
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	3 cut(s)	493, 856, 1073
EcoT22I	ATGCAT	1 cut(s)	897
ErhI	CCWWGG	3 cut(s)	493, 856, 1073
FaeI	CATG	7 cut(s)	86, 148, 157, 461, 497, 635, 707
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	7 cut(s)	82, 144, 153, 457, 493, 631, 703
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	149, 291, 623, 793, 796
FokI	GGATG	5 cut(s)	233, 437, 476, 874, 1114
Fsp4HI	GCNGC	5 cut(s)	149, 291, 623, 793, 796
FspBI	CTAG	9 cut(s)	137, 614, 699, 887, 920, 935, 971, 1074, 1088
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	5 cut(s)	149, 291, 623, 793, 796
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	1018
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	7 cut(s)	86, 148, 157, 461, 497, 635, 707
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	2 cut(s)	402, 708
HphI	GGTGA	5 cut(s)	23, 121, 703, 772, 958
Hpy166II	GTNNAC	1 cut(s)	995
Hpy188I	TCNGA	3 cut(s)	407, 583, 604
Hpy188III	TCNNGA	4 cut(s)	154, 233, 560, 1131
Hpy8I	GTNNAC	1 cut(s)	995
HpyAV	CCTTC	4 cut(s)	11, 406, 812, 1043
HpyCH4III	ACNGT	4 cut(s)	52, 183, 340, 370
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	8 cut(s)	293, 426, 489, 577, 683, 792, 884, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	5 cut(s)	69, 626, 659, 1013, 1122
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	7 cut(s)	86, 148, 157, 461, 497, 635, 707
HspAI	GCGC	1 cut(s)	528
KpnI	GGTACC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	156, 229, 387, 1146
LmnI	GCTCC	1 cut(s)	1069
Lsp1109I	GCAGC	5 cut(s)	135, 277, 609, 804, 807
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	9 cut(s)	137, 614, 699, 887, 920, 935, 971, 1074, 1088
MaeII	ACGT	1 cut(s)	205
MalI	GATC	4 cut(s)	158, 231, 389, 1148
MboI	GATC	4 cut(s)	156, 229, 387, 1146
MboII	GAAGA	7 cut(s)	290, 394, 397, 780, 783, 918, 1065
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	7 cut(s)	211, 301, 315, 419, 441, 637, 775
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	2 cut(s)	1026, 1031
Mph1103I	ATGCAT	1 cut(s)	897
MroXI	GAANNNNTTC	2 cut(s)	215, 567
MseI	TTAA	5 cut(s)	36, 306, 476, 986, 1153
MslI	CAYNNNNRTG	1 cut(s)	688
MspR9I	CCNGG	1 cut(s)	252
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	4 cut(s)	156, 229, 387, 1146
NheI	GCTAGC	2 cut(s)	136, 613
NlaIII	CATG	7 cut(s)	86, 148, 157, 461, 497, 635, 707
NlaIV	GGNNCC	3 cut(s)	337, 854, 1071
NsiI	ATGCAT	1 cut(s)	897
PagI	TCATGA	1 cut(s)	153
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	2 cut(s)	215, 567
PfeI	GAWTC	1 cut(s)	708
PkrI	GCNGC	5 cut(s)	150, 292, 624, 794, 797
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PpuMI	RGGWCCY	1 cut(s)	853
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	337, 854, 1071
PspPI	GGNCC	2 cut(s)	827, 853
PspPPI	RGGWCCY	1 cut(s)	853
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	2 cut(s)	32, 337
RsaNI	GTAC	2 cut(s)	31, 336
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	5 cut(s)	36, 306, 476, 986, 1153
SatI	GCNGC	5 cut(s)	149, 291, 623, 793, 796
Sau3AI	GATC	4 cut(s)	156, 229, 387, 1146
Sau96I	GGNCC	2 cut(s)	827, 853
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	2 cut(s)	827, 853
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SpeI	ACTAGT	2 cut(s)	698, 970
Sse9I	AATT	7 cut(s)	211, 301, 315, 419, 441, 637, 775
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	9 cut(s)	137, 614, 699, 887, 920, 935, 971, 1074, 1088
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	3 cut(s)	493, 856, 1073
TaaI	ACNGT	4 cut(s)	52, 183, 340, 370
TaiI	ACGT	1 cut(s)	208
TasI	AATT	7 cut(s)	211, 301, 315, 419, 441, 637, 775
TfiI	GAWTC	1 cut(s)	708
Tru1I	TTAA	5 cut(s)	36, 306, 476, 986, 1153
Tru9I	TTAA	5 cut(s)	36, 306, 476, 986, 1153
TscAI	CASTG	7 cut(s)	328, 384, 663, 794, 805, 820, 1126
TseI	GCWGC	5 cut(s)	148, 290, 622, 792, 795
TspDTI	ATGAA	4 cut(s)	204, 291, 648, 826
TspRI	CASTG	7 cut(s)	328, 384, 663, 794, 805, 820, 1126
VpaK11BI	GGWCC	2 cut(s)	827, 853
XapI	RAATTY	4 cut(s)	211, 301, 419, 637
XmaJI	CCTAGG	1 cut(s)	1073
XmnI	GAANNNNTTC	2 cut(s)	215, 567
XspI	CTAG	9 cut(s)	137, 614, 699, 887, 920, 935, 971, 1074, 1088
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.