Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

34019694 .. 34035701

Gene Structure 16008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCACTTTCAAAGCCTTTATCACTAAAGAAAGTTTGTATAGAGGTTCCTACTTCTCTGTCATCCACACAGCCTCTAACACTACCATCTGGCAGGGCAACGAAAAAAATACCCATTTCACCTTCTGCAAAGGTTTTACTAACCATCCATGGCCTTAGCATCACCAATGACTCAAACAACGTTGTATGGTCCACACCGTTATTGAACTCTCTGGTTACTGCTCTCCAGCTTTTAGAAACCGGAAACCTGGTCTTAGTTGATGCTCAAAATGTGACCCTCTGGGAGAGTTTTGAGCACCCTACAGATACAGTCGTCATGGGTCAAAGATTGCGCGCATGTTGGGACCATGCCAAGGGTGATTATAGTCTTGCAGTTACCAGTGAGGATCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCAAGGGCACAAATGCTATCAAGTATGCAAGTGTGCCAGTGTCCTTTATGACAATGAATGGAACCGAAGAAAGAATGGTGTACTTCCCACAACTTGCACTCCAAATGCATAAGAAAATGAGGTATATGGAACTAGCTGACCCAAGGTTAGAGGGTCGTGTGAGGAGTGAGGAGGTTGAGAAGCTAGTGAGGGTAGCCTTGTGTTGTGTGCATGTAGGGCCAACACTGAGGCCAAGTATGACCAATGTGGTTGCTATGTTGGAAGGCAGATTACCTATAGCTGAGCCTAGGATTGAAGCATTAGAATTCTTGTGGTCCTATGGTGGAAATGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop

Protein Analysis

254

Amino Acids

28.22

Weight (kDa)

8.63

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	36 - 111	1.1e-12	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	12, 205, 722
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	4 cut(s)	229, 563, 610, 707
AluI	AGCT	4 cut(s)	229, 563, 610, 707
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	4 cut(s)	151, 406, 644, 656
ApoI	RAATTY	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	757
AspA2I	CCTAGG	1 cut(s)	713
AspLEI	GCGC	2 cut(s)	333, 335
AspS9I	GGNCC	5 cut(s)	189, 343, 406, 644, 741
AsuHPI	GGTGA	3 cut(s)	111, 154, 368
AvaII	GGWCC	3 cut(s)	189, 343, 741
AvrII	CCTAGG	1 cut(s)	713
BaeGI	GKGCMC	1 cut(s)	437
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
Bbv12I	GWGCWC	1 cut(s)	297
BccI	CCATC	2 cut(s)	94, 152
BciT130I	CCWGG	1 cut(s)	248
BfaI	CTAG	3 cut(s)	560, 611, 714
BfmI	CTRYAG	2 cut(s)	300, 702
BlnI	CCTAGG	1 cut(s)	713
BlpI	GCTNAGC	1 cut(s)	708
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	3 cut(s)	189, 343, 741
BmgT120I	GGNCC	5 cut(s)	189, 343, 406, 644, 741
BmiI	GGNNCC	3 cut(s)	48, 344, 490
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	168, 250
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	708
BsaJI	CCNNGG	5 cut(s)	148, 351, 429, 569, 713
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	378, 464
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	5 cut(s)	148, 351, 429, 569, 713
BseGI	GGATG	2 cut(s)	62, 144
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	644, 699
BseNI	ACTGG	2 cut(s)	378, 464
BsePI	GCGCGC	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	604, 611
BseSI	GKGCMC	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	4 cut(s)	153, 408, 646, 658
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	4 cut(s)	153, 408, 646, 658
Bsp1286I	GDGCHC	2 cut(s)	297, 437
Bsp143I	GATC	1 cut(s)	385
Bsp1720I	GCTNAGC	1 cut(s)	708
Bsp19I	CCATGG	1 cut(s)	148
BspANI	GGCC	4 cut(s)	153, 408, 646, 658
BspCNI	CTCAG	2 cut(s)	645, 700
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	48, 344, 490
BspPI	GGATC	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	378, 464
BssECI	CCNNGG	5 cut(s)	148, 351, 429, 569, 713
BssHII	GCGCGC	1 cut(s)	331
BssMI	GATC	1 cut(s)	385
BssT1I	CCWWGG	5 cut(s)	148, 351, 429, 569, 713
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	198, 310
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	4 cut(s)	155, 253, 653, 708
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	62, 144
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	333, 335
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	2 cut(s)	339, 641
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	300, 702
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	153, 408, 646, 658
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	62, 144
BtsIMutI	CAGTG	4 cut(s)	385, 404, 471, 650
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	2 cut(s)	333, 335
Cfr13I	GGNCC	5 cut(s)	189, 343, 406, 644, 741
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	5 cut(s)	149, 316, 336, 347, 638
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	4 cut(s)	155, 253, 653, 708
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eco130I	CCWWGG	5 cut(s)	148, 351, 429, 569, 713
Eco47I	GGWCC	3 cut(s)	189, 343, 741
Eco57I	CTGAAG	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	5 cut(s)	148, 351, 429, 569, 713
EcoT22I	ATGCAT	1 cut(s)	537
ErhI	CCWWGG	5 cut(s)	148, 351, 429, 569, 713
FaeI	CATG	5 cut(s)	152, 319, 339, 350, 641
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	5 cut(s)	148, 315, 335, 346, 637
FokI	GGATG	2 cut(s)	49, 131
FspBI	CTAG	3 cut(s)	560, 611, 714
GlaI	GCGC	2 cut(s)	332, 334
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	153, 408, 646, 658
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	2 cut(s)	333, 335
Hin1II	CATG	5 cut(s)	152, 319, 339, 350, 641
Hin6I	GCGC	2 cut(s)	331, 333
HinP1I	GCGC	2 cut(s)	331, 333
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	111, 154, 368
Hpy166II	GTNNAC	2 cut(s)	192, 508
Hpy8I	GTNNAC	2 cut(s)	192, 508
HpyAV	CCTTC	3 cut(s)	132, 397, 683
HpyCH4III	ACNGT	2 cut(s)	198, 310
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	6 cut(s)	128, 371, 455, 524, 535, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpyF3I	CTNAG	4 cut(s)	155, 253, 653, 708
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	152, 319, 339, 350, 641
HspAI	GCGC	2 cut(s)	331, 333
Kzo9I	GATC	1 cut(s)	385
LweI	GCATC	2 cut(s)	168, 250
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	3 cut(s)	560, 611, 714
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	214, 271, 373
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	1 cut(s)	506
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	297, 437
MluCI	AATT	2 cut(s)	422, 731
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	666
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	757
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	643
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	5 cut(s)	152, 319, 339, 350, 641
NlaIV	GGNNCC	3 cut(s)	48, 344, 490
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	2 cut(s)	339, 641
PauI	GCGCGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	757
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp1406I	AACGTT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	48, 344, 490
PspPI	GGNCC	5 cut(s)	189, 343, 406, 644, 741
PsuI	RGATCY	1 cut(s)	385
PteI	GCGCGC	1 cut(s)	331
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	5 cut(s)	189, 343, 406, 644, 741
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	297, 437
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	168, 250
SfcI	CTRYAG	2 cut(s)	300, 702
SinI	GGWCC	3 cut(s)	189, 343, 741
Sse9I	AATT	2 cut(s)	422, 731
SspMI	CTAG	3 cut(s)	560, 611, 714
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	5 cut(s)	148, 351, 429, 569, 713
TaaI	ACNGT	2 cut(s)	198, 310
TaiI	ACGT	1 cut(s)	183
TasI	AATT	2 cut(s)	422, 731
TatI	WGTACW	1 cut(s)	507
TscAI	CASTG	4 cut(s)	385, 404, 471, 657
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	497, 750
TspRI	CASTG	4 cut(s)	385, 404, 471, 657
VpaK11BI	GGWCC	3 cut(s)	189, 343, 741
XapI	RAATTY	1 cut(s)	731
XceI	RCATGY	2 cut(s)	339, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmaJI	CCTAGG	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	757
XspI	CTAG	3 cut(s)	560, 611, 714
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.