Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

56231255 .. 56233962

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGTTTAATCCTGATGCTCAGTCCAACTTCTACTTGAGCATCATCCATGAGGTATCCAATACCGTCATCTGGTCTGCCAATCGCAATGCTGCCATCTCTAGTTCTGGTGAGATGAATCTCACGGTTAAAGGACTTAGCATTTTAGATGCGGATGGCAATCCCGTTTGGTCAACTCCAGCATTGAAGTCATCAGTGTATGCATTATTGCTGAATGAAGTAGGGAATCTAATCCTTCTTGATCAATTCAATGGTTCTCTTTGGGAAAGTTTTCACTACCCAACAGACACGATTGTTATTGGACAAGAGTTATCAGTTGGGTCCATTCTGGCCAGTTCCAGTGGCGCAACAAACTTTTCAACCGGTGATTACAAGCTCGTACCAAGTTCTTCTGATGTGATACTTCAATGGCATGGGCAGACATATTGGAAGTTGTCAATGGATACACGGGCTTATAAAAACTCAAATTACGTAGCTGAATATATGGCTATCAACAGAACAGGTCTTCAGCTTCTTGGTCTTAATGGAACAATGGTCGTGATTCAGGTGCTCTTGACACCTTCTGACTTTCGAATCGCTCAGTTGGATCCCTCGGGAAAGTTTATTGTCAAAAGCTTTTCTGGTTCACAATGGAACCAGGAATTTGTGGGGCCAATTGATGGTTGTAGAATTCCATTCTTTTGTGGCAGAATTGGTTTGTGTACAGGCTCTGCATCCACTAACCCTACATGTTCATCATGTCCATCAACTTTCCATGTAAGTTCCCAAGATAATGGTGGTTGCCTGCCAAATAGTCCTTATTCTCCGCCATTACCCTGTAACTCAACCAATAACGGCAGTCAGCTGAATTCATCAGCCGTTTCATTTATCAAGCTTGGCAACGGTATGGATTACTTTTCCATTCTTTTTTCCGAGCCTGTAAAATACGGTGTTACTTTGTCCATCTGTCAAGAACTCTGCTCTAGCAACTGCTCTTGCTTGGGAGTTTTCTATCAAAATTCATCTGGTTCTTGCTATTTGCTTGAAGATCAGTTGGGGTCCATTATTTCCAATAGTAATGCTGATGTAAATGATCCATTGGGTTACATCAAAGCCCTTGCCCCAACAGACTCTAATAACAGTAACAATCCCAGTTCTGGAAAAGGAAACTTTCCTGTAGCGGCTCTGGTGCTTTTGCCATTTACTGGGTTCTCTCTGTTGGCAGCTCTAGGTTTTCTTCTGCACGGAAGACGGAGACGGTCAAAGGAAAAAGAGATAAAATTAGGGAGTTTCGACTCACGTTCTTCAGGAGATATGGATGGCTTCTACATCCCAGGATTACCTAAGAGGTTTGACTTTGAAGAACTTGAAGTGGCTACAGATAATTTTAAGACCCTGATTGGGTCTGGTGGGTTTGGTGCTGTCTATAAGGGAATTCTACGTGATAAAACTGTCGTAGCTGTAAAGAAGATAACAAATGTAGGAGTTCAAGGGAAAAAAGATTTCTGCGCTGAGATTGCAGTGATTGGTAATGTTCACCATGCCAATTTGGTTAAATTGAAAGGGTTTTGCGCCCAAGGGAGACATCGCCTTTTGGTCTATGAATATATGAATCGTGGCTCGCTTGACCGGACACTTTTTGGTAGTGGACCAGTCATAGAATGGCAAGAGAGACTTGATATAGCTCTAGGGACAGCGCGTGGGCTCGCATACTTGCACAGTGGGTGTGATCAGAAGATTATCCATTGTGATGTCAAGCCAGAGAACATTCTCTTGCAGGATCATTTTCAGGCAAAGCTTTCGGATTTTGGCCTTTCAAAGCTTCTCAGTCCGGAACAATCCAGTCTATTTACAACTATGAGAGGCACTCGTGGCTATCTGGCACCAGAATGGCTAACTAACTCTGCAATCTCAGAAAAAACCGATGTCTACAGTTTTGGAATGGTACTTCTAGAACTTGTCAGTGGAAGGAAAAACACACTAAGACTGCAAAGCCATAATCTGAATGACAGTAGCAGCGGTGGTGGTCGGTCATCATCATCATCTGGGTCAGGACCTGTTTATTTTCCGTTGTTTGCACTAGAGATGCATGAGCAAGGGAGGTACTTGGAACTAGTTGATCTAAGACTGGAAGGACGGGTGACAAGTGAAGAGGTGGAGAAATTTGTGCGTGTTGCATTATGTTGTGTTCAAGAGGAACCAGCACTCAGGCCAAATATGAATACTATTGTTGGCATGCTGGAAGGTGGCATCCCTTTAAGCCAGCCAAATTTTGATTCGTTGAATTTCTTGCGCTTTATTGGACGTCGATTCACTGAGGCGTCTATGATAGAAGAGGGAACTGAGAGAAATGATAGAGTGCTGTATCAAGAGTCAAATTCTTTTCCTACGCGGACAACAATTGGCTCGCATACTTGCTTTTCTTATGTCTCTTCACAGGAGGTTTCAGGCCCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

811

Amino Acids

88.49

Weight (kDa)

6.02

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	21 - 105	7.1e-13	D-mannose binding lectin
PK_Tyr_Ser-Thr	PF07714	455 - 736	2e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	456 - 653	2.3e-49	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AatII	GACGTC	1 cut(s)	2284
AccB1I	GGYRCC	1 cut(s)	1858
AccB7I	CCANNNNNTGG	2 cut(s)	656, 1181
AccI	GTMKAC	1 cut(s)	1905
AccII	CGCG	2 cut(s)	1675, 2368
AccIII	TCCGGA	1 cut(s)	1807
AciI	CCGC	5 cut(s)	149, 803, 1157, 1995, 2368
AclWI	GGATC	4 cut(s)	578, 591, 1064, 1764
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	9 cut(s)	638, 666, 844, 994, 1410, 2138, 2245, 2260, 2353
AcuI	CTGAAG	2 cut(s)	488, 1266
AcyI	GRCGYC	2 cut(s)	2281, 2297
AfaI	GTAC	4 cut(s)	378, 700, 1923, 2081
AfiI	CCNNNNNNNGG	5 cut(s)	69, 656, 1133, 1181, 1377
AflIII	ACRYGT	1 cut(s)	725
AgeI	ACCGGT	1 cut(s)	359
AhlI	ACTAGT	1 cut(s)	2089
AjnI	CCWGG	2 cut(s)	633, 1309
AjuI	GAANNNNNNNTTGG	2 cut(s)	2236, 2268
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	4 cut(s)	1225, 1552, 1642, 2410
AlwI	GGATC	4 cut(s)	578, 591, 1064, 1764
AlwNI	CAGNNNCTG	2 cut(s)	707, 2033
Ama87I	CYCGRG	1 cut(s)	589
Aor13HI	TCCGGA	1 cut(s)	1807
AoxI	GGCC	5 cut(s)	327, 647, 1786, 2186, 2425
ApeKI	GCWGC	3 cut(s)	89, 1199, 1992
ApoI	RAATTY	9 cut(s)	638, 666, 844, 994, 1410, 2138, 2245, 2260, 2353
AsiGI	ACCGGT	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	5 cut(s)	344, 1487, 1550, 1675, 2271
AspS9I	GGNCC	6 cut(s)	318, 647, 1035, 1625, 2030, 2426
AsuHPI	GGTGA	4 cut(s)	119, 374, 1505, 2128
AsuII	TTCGAA	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	4 cut(s)	318, 1035, 1625, 2030
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	1858
BanII	GRGCYC	1 cut(s)	1683
BauI	CACGAG	1 cut(s)	1845
BbsI	GAAGAC	2 cut(s)	494, 1231
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	76, 1211, 2004
BccI	CCATC	6 cut(s)	101, 146, 650, 748, 947, 1289
BceAI	ACGGC	2 cut(s)	839, 847
BcgI	CGANNNNNNTGC	2 cut(s)	1758, 1792
BciT130I	CCWGG	2 cut(s)	635, 1311
BciVI	GTATCC	2 cut(s)	64, 433
BclI	TGATCA	2 cut(s)	238, 1705
BcoDI	GTCTC	4 cut(s)	1225, 1552, 1642, 2410
BcuI	ACTAGT	1 cut(s)	2089
BfaI	CTAG	7 cut(s)	99, 960, 1205, 1664, 1928, 2057, 2090
BfmI	CTRYAG	3 cut(s)	1152, 1353, 1906
BfuI	GTATCC	2 cut(s)	64, 433
BisI	GCNGC	4 cut(s)	90, 1158, 1200, 1993
BlsI	GCNGC	4 cut(s)	91, 1159, 1201, 1994
Bme1390I	CCNGG	2 cut(s)	635, 1311
Bme18I	GGWCC	4 cut(s)	318, 1035, 1625, 2030
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	6 cut(s)	318, 647, 1035, 1625, 2030, 2426
BmiI	GGNNCC	7 cut(s)	319, 585, 632, 648, 1036, 1860, 2175
BmrFI	CCNGG	2 cut(s)	635, 1311
BmrI	ACTGGG	2 cut(s)	1122, 1191
BmsI	GCATC	6 cut(s)	4, 48, 136, 719, 2052, 2235
BmuI	ACTGGG	2 cut(s)	1122, 1191
BpiI	GAAGAC	2 cut(s)	494, 1231
BplI	GAGNNNNNCTC	2 cut(s)	1828, 1860
BpmI	CTGGAG	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	568
BpuEI	CTTGAG	1 cut(s)	55
BsaAI	YACGTR	2 cut(s)	469, 1418
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	2281, 2297
BsaJI	CCNNGG	3 cut(s)	588, 1309, 1552
BsaWI	WCCGGW	3 cut(s)	359, 1605, 1807
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 656, 1133, 1181, 1377
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	7 cut(s)	330, 336, 1128, 1186, 1628, 1818, 2109
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	156
BseAI	TCCGGA	1 cut(s)	1807
BseBI	CCWGG	2 cut(s)	635, 1311
BseDI	CCNNGG	3 cut(s)	588, 1309, 1552
BseGI	GGATG	6 cut(s)	42, 157, 710, 1300, 1305, 2226
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	5 cut(s)	69, 656, 1133, 1181, 1377
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	8 cut(s)	32, 590, 1479, 1816, 1902, 2197, 2283, 2310
BseNI	ACTGG	7 cut(s)	330, 336, 1128, 1186, 1628, 1818, 2109
BseXI	GCAGC	3 cut(s)	76, 1211, 2004
BsgI	GTGCAG	1 cut(s)	1202
Bsh1236I	CGCG	2 cut(s)	1675, 2368
BshFI	GGCC	5 cut(s)	329, 649, 1788, 2188, 2427
BshNI	GGYRCC	1 cut(s)	1858
BshTI	ACCGGT	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	3 cut(s)	360, 1606, 1808
BslFI	GGGAC	1 cut(s)	1681
BslI	CCNNNNNNNGG	5 cut(s)	69, 656, 1133, 1181, 1377
BsmAI	GTCTC	4 cut(s)	1225, 1552, 1642, 2410
BsmBI	CGTCTC	1 cut(s)	1225
BsmFI	GGGAC	1 cut(s)	1681
BsnI	GGCC	5 cut(s)	329, 649, 1788, 2188, 2427
BsoBI	CYCGRG	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	549, 1683
Bsp13I	TCCGGA	1 cut(s)	1807
Bsp1407I	TGTACA	1 cut(s)	698
Bsp143I	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
BspACI	CCGC	5 cut(s)	149, 803, 1157, 1995, 2368
BspANI	GGCC	5 cut(s)	329, 649, 1788, 2188, 2427
BspCNI	CTCAG	8 cut(s)	31, 589, 1480, 1815, 1901, 2196, 2284, 2311
BspEI	TCCGGA	1 cut(s)	1807
BspFNI	CGCG	2 cut(s)	1675, 2368
BspLI	GGNNCC	7 cut(s)	319, 585, 632, 648, 1036, 1860, 2175
BspPI	GGATC	4 cut(s)	578, 591, 1064, 1764
BspT104I	TTCGAA	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	1858
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	698
BsrI	ACTGG	7 cut(s)	330, 336, 1128, 1186, 1628, 1818, 2109
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	588, 1309, 1552
BssMI	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
BssNI	GRCGYC	2 cut(s)	2281, 2297
BssSI	CACGAG	1 cut(s)	1845
BssT1I	CCWWGG	1 cut(s)	1552
Bst2BI	CACGAG	1 cut(s)	1845
Bst2UI	CCWGG	2 cut(s)	635, 1311
Bst6I	CTCTTC	3 cut(s)	2121, 2304, 2413
BstACI	GRCGYC	2 cut(s)	2281, 2297
BstAUI	TGTACA	1 cut(s)	698
BstBAI	YACGTR	2 cut(s)	469, 1418
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	6 cut(s)	782, 1598, 1683, 2213, 2240, 2384
BstF5I	GGATG	6 cut(s)	42, 157, 710, 1300, 1305, 2226
BstFNI	CGCG	2 cut(s)	1675, 2368
BstHHI	GCGC	5 cut(s)	344, 1487, 1550, 1675, 2271
BstKTI	GATC	7 cut(s)	241, 586, 1027, 1072, 1708, 1759, 2098
BstMAI	GTCTC	4 cut(s)	1225, 1552, 1642, 2410
BstMBI	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
BstMWI	GCNNNNNNNGC	2 cut(s)	1493, 1848
BstNI	CCWGG	2 cut(s)	635, 1311
BstNSI	RCATGY	2 cut(s)	729, 2215
BstSCI	CCNGG	2 cut(s)	633, 1309
BstSFI	CTRYAG	3 cut(s)	1152, 1353, 1906
BstSNI	TACGTA	1 cut(s)	469
BstUI	CGCG	2 cut(s)	1675, 2368
BstV1I	GCAGC	3 cut(s)	76, 1211, 2004
BstV2I	GAAGAC	2 cut(s)	494, 1231
BstX2I	RGATCY	1 cut(s)	583
BstXI	CCANNNNNNTGG	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	583
BsuI	GTATCC	2 cut(s)	64, 433
BsuRI	GGCC	5 cut(s)	329, 649, 1788, 2188, 2427
BtgZI	GCGATG	1 cut(s)	1547
BtsCI	GGATG	6 cut(s)	42, 157, 710, 1300, 1305, 2226
BtsI	GCAGTG	1 cut(s)	1503
BtsIMutI	CAGTG	6 cut(s)	198, 343, 1503, 1702, 1945, 2289
Cac8I	GCNNGC	6 cut(s)	782, 1598, 1683, 2213, 2240, 2384
CaiI	CAGNNNCTG	2 cut(s)	707, 2033
CfoI	GCGC	5 cut(s)	344, 1487, 1550, 1675, 2271
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	6 cut(s)	318, 647, 1035, 1625, 2030, 2426
CseI	GACGC	1 cut(s)	2286
Csp6I	GTAC	4 cut(s)	377, 699, 1922, 2080
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	8 cut(s)	47, 410, 726, 735, 752, 1517, 2066, 2212
CviQI	GTAC	4 cut(s)	377, 699, 1922, 2080
DpnI	GATC	7 cut(s)	240, 585, 1026, 1071, 1707, 1758, 2097
DpnII	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	3 cut(s)	2121, 2304, 2413
EarI	CTCTTC	3 cut(s)	2121, 2304, 2413
EciI	GGCGGA	1 cut(s)	792
Eco105I	TACGTA	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	1552
Eco24I	GRGCYC	1 cut(s)	1683
Eco47I	GGWCC	4 cut(s)	318, 1035, 1625, 2030
Eco57I	CTGAAG	2 cut(s)	488, 1266
Eco88I	CYCGRG	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	2030
EcoRI	GAATTC	3 cut(s)	666, 844, 1410
EcoRII	CCWGG	2 cut(s)	633, 1309
EcoT14I	CCWWGG	1 cut(s)	1552
EcoT22I	ATGCAT	2 cut(s)	202, 2067
EcoT38I	GRGCYC	1 cut(s)	1683
ErhI	CCWWGG	1 cut(s)	1552
Esp3I	CGTCTC	1 cut(s)	1225
FaeI	CATG	8 cut(s)	50, 413, 729, 738, 755, 1520, 2069, 2215
FalI	AAGNNNNNCTT	2 cut(s)	1635, 1667
FaqI	GGGAC	1 cut(s)	1681
FatI	CATG	8 cut(s)	46, 409, 725, 734, 751, 1516, 2065, 2211
FbaI	TGATCA	2 cut(s)	238, 1705
FblI	GTMKAC	1 cut(s)	1905
Fnu4HI	GCNGC	4 cut(s)	90, 1158, 1200, 1993
FokI	GGATG	6 cut(s)	29, 164, 697, 1292, 1307, 2213
FriOI	GRGCYC	1 cut(s)	1683
Fsp4HI	GCNGC	4 cut(s)	90, 1158, 1200, 1993
FspBI	CTAG	7 cut(s)	99, 960, 1205, 1664, 1928, 2057, 2090
GlaI	GCGC	5 cut(s)	343, 1486, 1549, 1674, 2270
GluI	GCNGC	4 cut(s)	90, 1158, 1200, 1993
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	5 cut(s)	329, 649, 1788, 2188, 2427
HapII	CCGG	3 cut(s)	360, 1606, 1808
HgaI	GACGC	1 cut(s)	2286
HhaI	GCGC	5 cut(s)	344, 1487, 1550, 1675, 2271
Hin1I	GRCGYC	2 cut(s)	2281, 2297
Hin1II	CATG	8 cut(s)	50, 413, 729, 738, 755, 1520, 2069, 2215
Hin6I	GCGC	5 cut(s)	342, 1485, 1548, 1673, 2269
HinP1I	GCGC	5 cut(s)	342, 1485, 1548, 1673, 2269
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	4 cut(s)	610, 869, 1772, 1796
HpaII	CCGG	3 cut(s)	360, 1606, 1808
HphI	GGTGA	4 cut(s)	119, 374, 1505, 2128
Hpy166II	GTNNAC	6 cut(s)	171, 623, 699, 1513, 1625, 1906
Hpy188I	TCNGA	7 cut(s)	391, 562, 910, 1710, 1780, 1891, 1980
Hpy8I	GTNNAC	6 cut(s)	171, 623, 699, 1513, 1625, 1906
Hpy99I	CGWCG	1 cut(s)	2286
HpyAV	CCTTC	5 cut(s)	242, 567, 1938, 2102, 2213
HpyCH4IV	ACGT	4 cut(s)	468, 1276, 1417, 2281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1493, 1848
HpySE526I	ACGT	4 cut(s)	468, 1276, 1417, 2281
Hsp92I	GRCGYC	2 cut(s)	2281, 2297
Hsp92II	CATG	8 cut(s)	50, 413, 729, 738, 755, 1520, 2069, 2215
HspAI	GCGC	5 cut(s)	342, 1485, 1548, 1673, 2269
Kpn2I	TCCGGA	1 cut(s)	1807
Ksp22I	TGATCA	2 cut(s)	238, 1705
Kzo9I	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
Lsp1109I	GCAGC	3 cut(s)	76, 1211, 2004
LweI	GCATC	6 cut(s)	4, 48, 136, 719, 2052, 2235
MaeI	CTAG	7 cut(s)	99, 960, 1205, 1664, 1928, 2057, 2090
MaeII	ACGT	4 cut(s)	468, 1276, 1417, 2281
MaeIII	GTNAC	5 cut(s)	815, 928, 1079, 1118, 2116
MalI	GATC	7 cut(s)	240, 585, 1026, 1071, 1707, 1758, 2097
MboI	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
MfeI	CAATTG	2 cut(s)	651, 2376
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	549, 1683
MlsI	TGGCCA	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	3 cut(s)	1100, 1265, 2357
MmeI	TCCRAC	2 cut(s)	48, 561
Mox20I	TGGCCA	1 cut(s)	329
Mph1103I	ATGCAT	2 cut(s)	202, 2067
MroI	TCCGGA	1 cut(s)	1807
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	6 cut(s)	6, 126, 519, 1365, 1530, 2234
MslI	CAYNNNNRTG	2 cut(s)	1725, 1864
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	2 cut(s)	841, 1995
MspI	CCGG	3 cut(s)	360, 1606, 1808
MspR9I	CCNGG	2 cut(s)	635, 1311
MunI	CAATTG	2 cut(s)	651, 2376
MvaI	CCWGG	2 cut(s)	635, 1311
MvnI	CGCG	2 cut(s)	1675, 2368
MwoI	GCNNNNNNNGC	2 cut(s)	1493, 1848
NdeII	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
NlaIII	CATG	8 cut(s)	50, 413, 729, 738, 755, 1520, 2069, 2215
NlaIV	GGNNCC	7 cut(s)	319, 585, 632, 648, 1036, 1860, 2175
NmuCI	GTSAC	1 cut(s)	2116
NsiI	ATGCAT	2 cut(s)	202, 2067
NspI	RCATGY	2 cut(s)	729, 2215
NspV	TTCGAA	1 cut(s)	568
PaeI	GCATGC	1 cut(s)	2215
PciI	ACATGT	1 cut(s)	725
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	7 cut(s)	115, 223, 538, 570, 1588, 2252, 2286
PflMI	CCANNNNNTGG	2 cut(s)	656, 1181
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	91, 1159, 1201, 1994
PleI	GAGTC	3 cut(s)	1100, 1265, 2356
PpsI	GAGTC	3 cut(s)	1100, 1265, 2356
Ppu21I	YACGTR	2 cut(s)	469, 1418
PpuMI	RGGWCCY	1 cut(s)	2030
PscI	ACATGT	1 cut(s)	725
PsiI	TTATAA	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	2030
Psp6I	CCWGG	2 cut(s)	633, 1309
PspGI	CCWGG	2 cut(s)	633, 1309
PspN4I	GGNNCC	7 cut(s)	319, 585, 632, 648, 1036, 1860, 2175
PspPI	GGNCC	6 cut(s)	318, 647, 1035, 1625, 2030, 2426
PspPPI	RGGWCCY	1 cut(s)	2030
PstNI	CAGNNNCTG	2 cut(s)	707, 2033
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	841
RsaI	GTAC	4 cut(s)	378, 700, 1923, 2081
RsaNI	GTAC	4 cut(s)	377, 699, 1922, 2080
RseI	CAYNNNNRTG	2 cut(s)	1725, 1864
SaqAI	TTAA	6 cut(s)	6, 126, 519, 1365, 1530, 2234
SatI	GCNGC	4 cut(s)	90, 1158, 1200, 1993
Sau3AI	GATC	7 cut(s)	238, 583, 1024, 1069, 1705, 1756, 2095
Sau96I	GGNCC	6 cut(s)	318, 647, 1035, 1625, 2030, 2426
SchI	GAGTC	3 cut(s)	1100, 1265, 2357
ScrFI	CCNGG	2 cut(s)	635, 1311
SduI	GDGCHC	2 cut(s)	549, 1683
SfaNI	GCATC	6 cut(s)	4, 48, 136, 719, 2052, 2235
SfcI	CTRYAG	3 cut(s)	1152, 1353, 1906
SfuI	TTCGAA	1 cut(s)	568
SinI	GGWCC	4 cut(s)	318, 1035, 1625, 2030
SmiMI	CAYNNNNRTG	2 cut(s)	1725, 1864
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SnaBI	TACGTA	1 cut(s)	469
SpeI	ACTAGT	1 cut(s)	2089
SphI	GCATGC	1 cut(s)	2215
SsiI	CCGC	5 cut(s)	149, 803, 1157, 1995, 2368
SspMI	CTAG	7 cut(s)	99, 960, 1205, 1664, 1928, 2057, 2090
StyD4I	CCNGG	2 cut(s)	633, 1309
StyI	CCWWGG	1 cut(s)	1552
TaiI	ACGT	4 cut(s)	471, 1279, 1420, 2284
TaqI	TCGA	3 cut(s)	568, 1269, 2284
TaqII	GACCGA	1 cut(s)	1995
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	1160
TfiI	GAWTC	7 cut(s)	115, 223, 538, 570, 1588, 2252, 2286
Tru1I	TTAA	6 cut(s)	6, 126, 519, 1365, 1530, 2234
Tru9I	TTAA	6 cut(s)	6, 126, 519, 1365, 1530, 2234
TscAI	CASTG	6 cut(s)	198, 343, 1503, 1702, 1945, 2296
TseFI	GTSAC	1 cut(s)	2116
TseI	GCWGC	3 cut(s)	89, 1199, 1992
Tsp45I	GTSAC	1 cut(s)	2116
TspDTI	ATGAA	9 cut(s)	128, 228, 720, 837, 849, 987, 1593, 1601, 2210
TspGWI	ACGGA	3 cut(s)	1236, 1243, 2034
TspRI	CASTG	6 cut(s)	198, 343, 1503, 1702, 1945, 2296
Van91I	CCANNNNNTGG	2 cut(s)	656, 1181
VpaK11BI	GGWCC	4 cut(s)	318, 1035, 1625, 2030
XapI	RAATTY	9 cut(s)	638, 666, 844, 994, 1410, 2138, 2245, 2260, 2353
XbaI	TCTAGA	1 cut(s)	1927
XceI	RCATGY	2 cut(s)	729, 2215
XcmI	CCANNNNNNNNNTGG	2 cut(s)	770, 1635
XmiI	GTMKAC	1 cut(s)	1905
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	7 cut(s)	99, 960, 1205, 1664, 1928, 2057, 2090
ZraI	GACGTC	1 cut(s)	2282
Zsp2I	ATGCAT	2 cut(s)	202, 2067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.