Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Forward (+)

50579122 .. 50579619

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATAGAGGTTCATTGGAGAAGGTTCTCTTTGGCAATGGCCCTGTTTTGGATTGGGAAAAGAGATATGGGATAGCGCTTGGAATGGCAAGGGGGCTTGCTTACTTGCACAGTGGATGCAATCCCAAGGTAGTCCACTGTGACATCAAACCGGAAAACATACTTCTGCATGATGATTTACAAGTGAAGATATCAGACTATGGGGTTTGCAAGTTTATAAGTTACGAAAAATCCAAACTGTTGACGCCATTGAGAGGAACTCGGGGATATCTTGCGCCTGAATGGCTTACTAGCTATGCAATTAGTGAAAAAATTGATGTATACAGTTATGGGATGGTGTTGCTAGAATTGGTGAGGGGAAGAAGAAATTGCTTGTTTCAAAGTGGTGGCACCGGAAATGATGACACTGATGGAAATGAAAGATGTTTCAATTCAATCAGTTCGGAAGAAAGAATGGTGTACTTCCCAGAACTTGCACTCCAGTGCATAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

165

Amino Acids

18.65

Weight (kDa)

7.58

Isoelectric Point (pI)

28.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 125	5.1e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 119	5.5e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	461
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	49, 254
AgsI	TTSAA	3 cut(s)	380, 430, 435
AleI	CACNNNNGTG	1 cut(s)	481
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	261
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	79, 277
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	389
BccI	CCATC	2 cut(s)	328, 404
BfaI	CTAG	2 cut(s)	291, 344
BfoI	RGCGCY	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	391
BmsI	GCATC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	2 cut(s)	151, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 254
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	122, 339
BseLI	CCNNNNNNNGG	2 cut(s)	49, 254
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	152, 393
BslI	CCNNNNNNNGG	2 cut(s)	49, 254
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	261
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	126
BssNAI	GTATAC	1 cut(s)	322
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	322
Bst4CI	ACNGT	4 cut(s)	113, 140, 240, 326
BstACI	GRCGYC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	122, 339
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstZ17I	GTATAC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	122, 339
BtsIMutI	CAGTG	4 cut(s)	118, 136, 405, 488
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	2 cut(s)	79, 277
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	4 cut(s)	42, 97, 286, 294
CviKI_1	RGCY	4 cut(s)	42, 97, 286, 294
CviQI	GTAC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	126
Eco32I	GATATC	2 cut(s)	192, 269
Eco47III	AGCGCT	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	261
EcoRV	GATATC	2 cut(s)	192, 269
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	173
FaiI	YATR	9 cut(s)	69, 161, 171, 201, 218, 297, 322, 330, 488
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	321
FokI	GGATG	2 cut(s)	129, 346
FspBI	CTAG	2 cut(s)	291, 344
GlaI	GCGC	2 cut(s)	78, 276
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	152, 393
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	2 cut(s)	79, 277
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	2 cut(s)	77, 275
HinP1I	GCGC	2 cut(s)	77, 275
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HpaII	CCGG	2 cut(s)	152, 393
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	4 cut(s)	136, 243, 322, 460
Hpy188I	TCNGA	2 cut(s)	196, 445
Hpy8I	GTNNAC	4 cut(s)	136, 243, 322, 460
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	4 cut(s)	113, 140, 240, 326
HpyCH4V	TGCA	7 cut(s)	109, 120, 169, 210, 299, 476, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	2 cut(s)	77, 275
LpnPI	CCDG	6 cut(s)	57, 165, 291, 406, 480, 494
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	2 cut(s)	291, 344
MaeIII	GTNAC	2 cut(s)	140, 221
MboII	GAAGA	4 cut(s)	199, 372, 375, 458
MluCI	AATT	5 cut(s)	300, 312, 347, 367, 430
MnlI	CCTC	2 cut(s)	248, 348
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	2 cut(s)	152, 393
MwoI	GCNNNNNNNGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	481
PsiI	TTATAA	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	481
Sau96I	GGNCC	1 cut(s)	41
SetI	ASST	4 cut(s)	13, 27, 132, 296
SfaNI	GCATC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	481
Sse9I	AATT	5 cut(s)	300, 312, 347, 367, 430
SspMI	CTAG	2 cut(s)	291, 344
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	113, 140, 240, 326
TasI	AATT	5 cut(s)	300, 312, 347, 367, 430
TatI	WGTACW	1 cut(s)	459
TscAI	CASTG	4 cut(s)	118, 143, 412, 488
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	17, 432
TspRI	CASTG	4 cut(s)	118, 143, 412, 488
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	2 cut(s)	291, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.