Rh7DG391000

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001098
Physical Location & Seq
Reverse (-)
53549038 .. 53551548
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG391000.1

Sequence Viewer

Length: 1749 bp
ATGGATTTCTTGTATGCATTGTGTTTGACTTTCGCTACCTTCAGCTTATGCTTTTTGCTCTTCCCAATTCTCACTGCCTCGAGCCCCATCCTTAATCACTCCATCACTCCAAACTTCACAGCCACAAATATGCAATTCATTGATAATTCCGGTGCTTTCCTGGAGTCTCTGAATGGCACTTTCAGAGCCTCTATCAATACTCTAGAATCAATCCACTCGCATTTCTACTTCTCTGTCATCCATGTGGCCTCTAACACCATCATCTGGTCAGCCAACCGCAACACTCCCATTTCATATTCTGCCATGCTCTCACTCACCATCCATGGCCTTAGCATCACCGATGACTCGAATAGAGTTGTATGGTCCACACCCTCATTCAACTCTAATATTGCTGCTCTCCAGCTTCTAGAAACCGGGAACCTCATCTTGGTTGATGCACAAAATGTTTCTCTCTGGAACAGTTTTGATTCTCCGACAGATACTGTGATGATTGGACAAAGATTGTATGTTGGTACATCATTGAATGGTGCTGTGGGAAACAATAACTTATCTGTGGATGATTACAGGCTTGCAGTTACCAGTAAGGATTTGGTTCTGCAATGGAAGGGTCAAACTTATTGGAAACTATCCATGGAAACCAAAGCTTTCAAGAATTCAGATACACCAGTGTCCTATATGGAAATGAATAGGACTGGTTTGTATTTGTTTGGGGCTGATGGCTCAGAGGTTGTATTTCAAGTTTTCTTGGAAACGTCAGATACAAAGATTGCGAGGTTGGGATATGAAGGGGTTTTCTGCATCAGTAGCTTCATGGGAAACAAGTGGGTGCAGGACTTTGTAAAGCCAGTTGATATCTGCCAACGTCCATTTACTTGTGAAAAACTGGGATTCTGCTCGAATCAGAATCCAACATGTATATGTCCAACAGGTTTCCATTATGATGCTGAGGAGAATGATGCTTGTGTGCCAATAGAAGACACCATCTCTTTGCCTTCTTCCTGTGATGAAAGTGGAAATTCCGGTGAGTTAAATTCCTCAACTGTTTATTTGGAACTGCAAAAAGGCATGGACTATTTTGGTAATCATTTCAACCGGCCTGTGAACCATGTGATGAATTTATCACTATGTCAAGATGTATGCTCACAAAACTGTTCTTGCCTAGGCATTTTTCATGAAAATTCTTCTGGTTCTTGTTATCTTCTCGAATACAATTTAGGTTCCCTAATGCCAATGACCTTTGGTGAGGAAGGTCTATTAGGGTACATTAAGGCTATCTCAACTGTGTCTGTAATCCCTGATGAGAATAAGAAACATGGTTTAGCAGTATCAAGTTTGGTGGTGATAATAACCTTTTCAGGGTTCGTGCTAGCCACCATGCTGCTCATGATCATAATATGGTTGAGAAAGAAACGGTATGATAGAATGACCTTTGGACGTTTGAATTCATTCTCAACAGCAGATCTTGAGGTGGTCTCCATCCCAGAAATGCATAAGCAAAGAAGATATAAAGAACTAGCCGACCCGAGGCTAGAGGGTCGGGTGAGGATTGAGGAGGTAGAGACACTAGTGAGGGTAGCGTTAAGTTGTTTACATATAGTTCCAACACTAAGGCCAAGTATGACTAATGTGGTTGCTATGTTGGAAGGAAGATTACATATAGGGGAGCCTAGGGTTGAGGCACTAGAGTTCTTGCGATTGTATGGTGGGAAAACCACTGAGACATCCAGATTACTCAAAAGGATCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin Pkinase

Protein Analysis

582

Amino Acids

64.92

Weight (kDa)

5.52

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 86 - 170 3.1e-17 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 264
AciI CCGC 1 cut(s) 277
AclWI GGATC 1 cut(s) 1748
AcsI RAATTY 6 cut(s) 652, 1015, 1030, 1114, 1177, 1441
AcuI CTGAAG 1 cut(s) 25
AfaI GTAC 2 cut(s) 514, 1262
AfiI CCNNNNNNNGG 4 cut(s) 264, 427, 1356, 1524
AflIII ACRYGT 1 cut(s) 911
AgsI TTSAA 6 cut(s) 379, 523, 649, 737, 1090, 1441
AhlI ACTAGT 1 cut(s) 1564
AjnI CCWGG 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 4 cut(s) 45, 403, 644, 807
AluI AGCT 4 cut(s) 45, 403, 644, 807
Alw26I GTCTC 4 cut(s) 171, 1477, 1553, 1712
AlwI GGATC 1 cut(s) 1748
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 2 cut(s) 79, 1522
AoxI GGCC 4 cut(s) 246, 325, 1094, 1610
ApeKI GCWGC 2 cut(s) 392, 1378
ApoI RAATTY 6 cut(s) 652, 1015, 1030, 1114, 1177, 1441
Asp700I GAANNNNTTC 1 cut(s) 1445
AspA2I CCTAGG 2 cut(s) 1159, 1667
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 6 cut(s) 307, 328, 1034, 1253, 1351, 1552
AsuNHI GCTAGC 1 cut(s) 1366
AvaI CYCGRG 2 cut(s) 79, 1522
AvaII GGWCC 1 cut(s) 363
AvrII CCTAGG 2 cut(s) 1159, 1667
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BanII GRGCYC 1 cut(s) 86
BarI GAAGNNNNNNTAC 2 cut(s) 1635, 1667
BbsI GAAGAC 1 cut(s) 981
BbvCI CCTCAGC 1 cut(s) 945
BbvI GCAGC 2 cut(s) 379, 1365
BccI CCATC 7 cut(s) 95, 110, 266, 326, 710, 989, 1484
BciT130I CCWGG 1 cut(s) 161
BclI TGATCA 1 cut(s) 1386
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 4 cut(s) 171, 1477, 1553, 1712
BcuI ACTAGT 1 cut(s) 1564
BfaI CTAG 9 cut(s) 203, 407, 1160, 1367, 1514, 1529, 1565, 1668, 1682
BglII AGATCT 1 cut(s) 1459
BisI GCNGC 2 cut(s) 393, 1379
BlnI CCTAGG 2 cut(s) 1159, 1667
BlsI GCNGC 2 cut(s) 394, 1380
Bme1390I CCNGG 2 cut(s) 161, 415
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 2 cut(s) 79, 1522
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 3 cut(s) 419, 1219, 1665
BmrFI CCNGG 2 cut(s) 161, 415
BmrI ACTGGG 1 cut(s) 893
BmsI GCATC 5 cut(s) 342, 424, 807, 931, 946
BmtI GCTAGC 1 cut(s) 1370
BmuI ACTGGG 1 cut(s) 893
BpiI GAAGAC 1 cut(s) 981
BplI GAGNNNNNCTC 2 cut(s) 1457, 1489
BpmI CTGGAG 2 cut(s) 182, 383
Bpu10I CCTNAGC 2 cut(s) 329, 945
BpuEI CTTGAG 1 cut(s) 1484
BpuMI CCSGG 1 cut(s) 415
BsaI GGTCTC 1 cut(s) 1477
BsaJI CCNNGG 5 cut(s) 322, 630, 1159, 1523, 1667
BsaWI WCCGGW 2 cut(s) 149, 1019
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 427, 1356, 1524
Bse118I RCCGGY 1 cut(s) 1092
Bse1I ACTGG 5 cut(s) 579, 665, 697, 845, 888
Bse3DI GCAATG 1 cut(s) 605
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 5 cut(s) 322, 630, 1159, 1523, 1667
BseGI GGATG 6 cut(s) 87, 237, 318, 562, 1476, 1721
BseLI CCNNNNNNNGG 4 cut(s) 264, 427, 1356, 1524
BseMI GCAATG 1 cut(s) 605
BseMII CTCAG 3 cut(s) 735, 936, 1707
BseNI ACTGG 5 cut(s) 579, 665, 697, 845, 888
BseRI GAGGAG 2 cut(s) 962, 1565
BseXI GCAGC 2 cut(s) 379, 1365
BsgI GTGCAG 1 cut(s) 848
BshFI GGCC 4 cut(s) 248, 327, 1096, 1612
BsiHKCI CYCGRG 2 cut(s) 79, 1522
BsiSI CCGG 4 cut(s) 150, 414, 1020, 1093
BslI CCNNNNNNNGG 4 cut(s) 264, 427, 1356, 1524
BsmAI GTCTC 4 cut(s) 171, 1477, 1553, 1712
BsnI GGCC 4 cut(s) 248, 327, 1096, 1612
Bso31I GGTCTC 1 cut(s) 1477
BsoBI CYCGRG 2 cut(s) 79, 1522
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 1386, 1459, 1740
Bsp19I CCATGG 2 cut(s) 322, 630
BspACI CCGC 1 cut(s) 277
BspANI GGCC 4 cut(s) 248, 327, 1096, 1612
BspCNI CTCAG 3 cut(s) 734, 937, 1708
BspHI TCATGA 2 cut(s) 1171, 1383
BspLI GGNNCC 3 cut(s) 419, 1219, 1665
BspOI GCTAGC 1 cut(s) 1370
BspPI GGATC 1 cut(s) 1748
BspQI GCTCTTC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 1477
BsrDI GCAATG 1 cut(s) 605
BsrFI RCCGGY 1 cut(s) 1092
BsrI ACTGG 5 cut(s) 579, 665, 697, 845, 888
BssAI RCCGGY 1 cut(s) 1092
BssECI CCNNGG 5 cut(s) 322, 630, 1159, 1523, 1667
BssMI GATC 3 cut(s) 1386, 1459, 1740
BssT1I CCWWGG 4 cut(s) 322, 630, 1159, 1667
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 6 cut(s) 461, 484, 1042, 1151, 1282, 1413
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 570, 1368
BstDEI CTNAG 5 cut(s) 329, 721, 945, 1607, 1716
BstDSI CCRYGG 2 cut(s) 322, 630
BstF5I GGATG 6 cut(s) 87, 237, 318, 562, 1476, 1721
BstKTI GATC 3 cut(s) 1389, 1462, 1743
BstMAI GTCTC 4 cut(s) 171, 1477, 1553, 1712
BstMBI GATC 3 cut(s) 1386, 1459, 1740
BstMWI GCNNNNNNNGC 1 cut(s) 804
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 915
BstSCI CCNGG 2 cut(s) 159, 413
BstV1I GCAGC 2 cut(s) 379, 1365
BstV2I GAAGAC 1 cut(s) 981
BstX2I RGATCY 1 cut(s) 1459
BstYI RGATCY 1 cut(s) 1459
BsuRI GGCC 4 cut(s) 248, 327, 1096, 1612
BtgI CCRYGG 2 cut(s) 322, 630
BtsCI GGATG 6 cut(s) 87, 237, 318, 562, 1476, 1721
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 3 cut(s) 72, 672, 1713
Cac8I GCNNGC 2 cut(s) 570, 1368
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 2 cut(s) 1171, 1383
Cfr10I RCCGGY 1 cut(s) 1092
Cfr13I GGNCC 1 cut(s) 363
Csp6I GTAC 2 cut(s) 513, 1261
CspCI CAANNNNNGTGG 2 cut(s) 1317, 1352
CviQI GTAC 2 cut(s) 513, 1261
DdeI CTNAG 5 cut(s) 329, 721, 945, 1607, 1716
DpnI GATC 3 cut(s) 1388, 1461, 1742
DpnII GATC 3 cut(s) 1386, 1459, 1740
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 4 cut(s) 322, 630, 1159, 1667
Eco24I GRGCYC 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 1477
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 25
Eco88I CYCGRG 2 cut(s) 79, 1522
EcoRI GAATTC 2 cut(s) 652, 1441
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 4 cut(s) 322, 630, 1159, 1667
EcoT22I ATGCAT 2 cut(s) 19, 1491
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 4 cut(s) 322, 630, 1159, 1667
FbaI TGATCA 1 cut(s) 1386
Fnu4HI GCNGC 2 cut(s) 393, 1379
FokI GGATG 6 cut(s) 74, 224, 305, 569, 1463, 1708
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 393, 1379
FspBI CTAG 9 cut(s) 203, 407, 1160, 1367, 1514, 1529, 1565, 1668, 1682
GluI GCNGC 2 cut(s) 393, 1379
GsuI CTGGAG 2 cut(s) 182, 383
HaeIII GGCC 4 cut(s) 248, 327, 1096, 1612
HapII CCGG 4 cut(s) 150, 414, 1020, 1093
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 7 cut(s) 164, 206, 344, 467, 888, 898, 904
HpaII CCGG 4 cut(s) 150, 414, 1020, 1093
HphI GGTGA 6 cut(s) 307, 328, 1034, 1253, 1351, 1552
Hpy166II GTNNAC 3 cut(s) 366, 1102, 1589
Hpy188I TCNGA 7 cut(s) 171, 185, 474, 658, 724, 757, 903
Hpy8I GTNNAC 3 cut(s) 366, 1102, 1589
HpyAV CCTTC 6 cut(s) 49, 598, 779, 1002, 1241, 1637
HpyCH4III ACNGT 6 cut(s) 461, 484, 1042, 1151, 1282, 1413
HpyCH4IV ACGT 3 cut(s) 752, 862, 1435
HpyCH4V TGCA 9 cut(s) 17, 133, 437, 572, 598, 798, 829, 1057, 1489
HpyF10VI GCNNNNNNNGC 1 cut(s) 804
HpyF3I CTNAG 5 cut(s) 329, 721, 945, 1607, 1716
HpySE526I ACGT 3 cut(s) 752, 862, 1435
Ksp22I TGATCA 1 cut(s) 1386
Kzo9I GATC 3 cut(s) 1386, 1459, 1740
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 1 cut(s) 1663
Lsp1109I GCAGC 2 cut(s) 379, 1365
LweI GCATC 5 cut(s) 342, 424, 807, 931, 946
MaeI CTAG 9 cut(s) 203, 407, 1160, 1367, 1514, 1529, 1565, 1668, 1682
MaeII ACGT 3 cut(s) 752, 862, 1435
MaeIII GTNAC 1 cut(s) 574
MalI GATC 3 cut(s) 1388, 1461, 1742
MboI GATC 3 cut(s) 1386, 1459, 1740
MboII GAAGA 7 cut(s) 52, 986, 987, 1173, 1190, 1512, 1659
MflI RGATCY 1 cut(s) 1459
MhlI GDGCHC 1 cut(s) 86
MlyI GAGTC 2 cut(s) 173, 338
MmeI TCCRAC 5 cut(s) 497, 932, 947, 1620, 1625
Mph1103I ATGCAT 2 cut(s) 19, 1491
MroXI GAANNNNTTC 1 cut(s) 1445
MseI TTAA 5 cut(s) 93, 1028, 1266, 1580, 1747
MslI CAYNNNNRTG 4 cut(s) 128, 242, 916, 939
MspI CCGG 4 cut(s) 150, 414, 1020, 1093
MspR9I CCNGG 2 cut(s) 161, 415
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 804
NciI CCSGG 1 cut(s) 415
NcoI CCATGG 2 cut(s) 322, 630
NdeII GATC 3 cut(s) 1386, 1459, 1740
NheI GCTAGC 1 cut(s) 1366
NlaIV GGNNCC 3 cut(s) 419, 1219, 1665
NsiI ATGCAT 2 cut(s) 19, 1491
NspI RCATGY 1 cut(s) 915
PaeR7I CTCGAG 1 cut(s) 79
PagI TCATGA 2 cut(s) 1171, 1383
PciI ACATGT 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 1445
PfeI GAWTC 5 cut(s) 206, 467, 888, 898, 904
PflMI CCANNNNNTGG 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 2 cut(s) 394, 1380
PleI GAGTC 2 cut(s) 172, 338
PpsI GAGTC 2 cut(s) 172, 338
PscI ACATGT 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 419, 1219, 1665
PspPI GGNCC 1 cut(s) 363
PspXI VCTCGAGB 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 1459
RsaI GTAC 2 cut(s) 514, 1262
RsaNI GTAC 2 cut(s) 513, 1261
RseI CAYNNNNRTG 4 cut(s) 128, 242, 916, 939
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 5 cut(s) 93, 1028, 1266, 1580, 1747
SatI GCNGC 2 cut(s) 393, 1379
Sau3AI GATC 3 cut(s) 1386, 1459, 1740
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 2 cut(s) 173, 338
ScrFI CCNGG 2 cut(s) 161, 415
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 5 cut(s) 342, 424, 807, 931, 946
Sfr274I CTCGAG 1 cut(s) 79
SinI GGWCC 1 cut(s) 363
SlaI CTCGAG 1 cut(s) 79
SmiMI CAYNNNNRTG 4 cut(s) 128, 242, 916, 939
SmlI CTYRAG 2 cut(s) 79, 1463
SmoI CTYRAG 2 cut(s) 79, 1463
SpeI ACTAGT 1 cut(s) 1564
SsiI CCGC 1 cut(s) 277
SspI AATATT 1 cut(s) 388
SspMI CTAG 9 cut(s) 203, 407, 1160, 1367, 1514, 1529, 1565, 1668, 1682
StyD4I CCNGG 2 cut(s) 159, 413
StyI CCWWGG 4 cut(s) 322, 630, 1159, 1667
TaaI ACNGT 6 cut(s) 461, 484, 1042, 1151, 1282, 1413
TaiI ACGT 3 cut(s) 755, 865, 1438
TaqI TCGA 4 cut(s) 80, 347, 896, 1203
TfiI GAWTC 5 cut(s) 206, 467, 888, 898, 904
Tru1I TTAA 5 cut(s) 93, 1028, 1266, 1580, 1747
Tru9I TTAA 5 cut(s) 93, 1028, 1266, 1580, 1747
TscAI CASTG 3 cut(s) 79, 672, 1720
TseI GCWGC 2 cut(s) 392, 1378
TspRI CASTG 3 cut(s) 79, 672, 1720
Van91I CCANNNNNTGG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 6 cut(s) 652, 1015, 1030, 1114, 1177, 1441
XbaI TCTAGA 2 cut(s) 202, 406
XceI RCATGY 1 cut(s) 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 79
XmaJI CCTAGG 2 cut(s) 1159, 1667
XmnI GAANNNNTTC 1 cut(s) 1445
XspI CTAG 9 cut(s) 203, 407, 1160, 1367, 1514, 1529, 1565, 1668, 1682
Zsp2I ATGCAT 2 cut(s) 19, 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.