Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007232.1

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

14492 .. 14788

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007232.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgggatccttcttgttcatccctgctgttttcttattctttgttgctgtctctagtatttctttcacagagtttatatacccgcctttctctgcttcacactatcaattcattgacaacgctggtaccttcttgtcttctcgaaatgggacattcagagctgctatgtttaatcctgatgctcagtccaacttctacttgagcatcatccatgaggcatccaataccgtcatctggtctgccaatcgcaatgctgccatctctagttctctttatatagaggattacaatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

98

Amino Acids

10.94

Weight (kDa)

4.92

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	161, 254
Asp718I	GGTACC	1 cut(s)	125
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BamHI	GGATCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	148, 241
BccI	CCATC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	54, 264
BisI	GCNGC	2 cut(s)	162, 255
BlsI	GCNGC	2 cut(s)	163, 256
BmiI	GGNNCC	2 cut(s)	7, 127
BmsI	GCATC	3 cut(s)	169, 213, 227
BpiI	GAAGAC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	256
BseGI	GGATG	3 cut(s)	18, 207, 218
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	148, 241
BshNI	GGYRCC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	7, 127
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	256
BssMI	GATC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	18, 207, 218
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	5
BstV1I	GCAGC	2 cut(s)	148, 241
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	18, 207, 218
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	1 cut(s)	161
CviKI_1	RGCY	1 cut(s)	161
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	295
FaeI	CATG	1 cut(s)	215
FaiI	YATR	7 cut(s)	77, 79, 167, 213, 276, 278, 295
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	162, 255
FokI	GGATG	3 cut(s)	5, 194, 205
Fsp4HI	GCNGC	2 cut(s)	162, 255
FspBI	CTAG	2 cut(s)	54, 264
GluI	GCNGC	2 cut(s)	162, 255
Hin1II	CATG	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	2 cut(s)	141, 176
HpyAV	CCTTC	2 cut(s)	19, 139
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	5
LpnPI	CCDG	4 cut(s)	36, 108, 189, 220
Lsp1109I	GCAGC	2 cut(s)	148, 241
LweI	GCATC	3 cut(s)	169, 213, 227
MaeI	CTAG	2 cut(s)	54, 264
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	2 cut(s)	208, 274
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	1 cut(s)	171
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	7, 127
NsiI	ATGCAT	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	163, 256
PspN4I	GGNNCC	2 cut(s)	7, 127
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	162, 255
Sau3AI	GATC	1 cut(s)	5
SetI	ASST	2 cut(s)	131, 163
SfaNI	GCATC	3 cut(s)	169, 213, 227
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	54, 264
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	2 cut(s)	161, 254
TspDTI	ATGAA	2 cut(s)	7, 100
XspI	CTAG	2 cut(s)	54, 264
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.