Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Forward (+)

62762150 .. 62762596

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG468700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCACTTTCAAAGCCTTTGTCACTAAAGAAAGTTTGTATAGAGGTTCCTACTTCTCTCTCATCCACACAGCCTCTAACACTACCATCTGGCAGGGCAACGAGAAAAATACCCATTTCACCTTCTGCTAAGGTTTTTCTAACCATCCATGGCCTTGGCATCACCAATGACTCAAACAACGTTGTATGGTCCACACCGTTATTGAACTCTCCGGTTACTGCTCTCCAGCTTTTAGAAACCGGGAACCTGGTCTTAGTTGATGCTCAAAATGTGACTCTCTGGGAGATCGAGCACCCTACAGATACAGTTGTCATGGCCTCACGGGTCAAAGATTGCATGTTGGTAAATCTCTGCTTACATATGCCAAGGGTGATTATAGTCTTACAGTTACCAGTGAGGACCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop Transgly

Protein Analysis

148

Amino Acids

16.19

Weight (kDa)

9.34

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	34 - 109	1.9e-08	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	394
AgsI	TTSAA	2 cut(s)	12, 205
AjnI	CCWGG	2 cut(s)	246, 401
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	294
AoxI	GGCC	3 cut(s)	151, 315, 420
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	189, 399, 420
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	111, 154, 382
AvaII	GGWCC	2 cut(s)	189, 399
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	2 cut(s)	94, 152
BciT130I	CCWGG	2 cut(s)	248, 403
BcnI	CCSGG	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	297
Bme1390I	CCNGG	3 cut(s)	241, 248, 403
Bme18I	GGWCC	2 cut(s)	189, 399
BmgT120I	GGNCC	3 cut(s)	189, 399, 420
BmiI	GGNNCC	2 cut(s)	48, 245
BmrFI	CCNGG	3 cut(s)	241, 248, 403
BmsI	GCATC	2 cut(s)	168, 250
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	148, 154, 365
BsaWI	WCCGGW	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	248, 403
BseDI	CCNNGG	3 cut(s)	148, 154, 365
BseGI	GGATG	2 cut(s)	62, 144
BseNI	ACTGG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	153, 317, 422
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	212, 240
BsnI	GGCC	3 cut(s)	153, 317, 422
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	148
BspANI	GGCC	3 cut(s)	153, 317, 422
BspLI	GGNNCC	2 cut(s)	48, 245
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	148, 154, 365
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	3 cut(s)	148, 154, 365
Bst2UI	CCWGG	2 cut(s)	248, 403
Bst4CI	ACNGT	3 cut(s)	198, 307, 387
BstDEI	CTNAG	2 cut(s)	129, 253
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	62, 144
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstNI	CCWGG	2 cut(s)	248, 403
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	3 cut(s)	239, 246, 401
BstSFI	CTRYAG	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	153, 317, 422
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	62, 144
BtsIMutI	CAGTG	2 cut(s)	399, 418
Cfr13I	GGNCC	3 cut(s)	189, 399, 420
CsiI	ACCWGGT	2 cut(s)	246, 401
CviAII	CATG	3 cut(s)	149, 313, 337
CviJI	RGCY	6 cut(s)	16, 73, 153, 229, 317, 422
CviKI_1	RGCY	6 cut(s)	16, 73, 153, 229, 317, 422
DdeI	CTNAG	2 cut(s)	129, 253
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eco130I	CCWWGG	3 cut(s)	148, 154, 365
Eco47I	GGWCC	2 cut(s)	189, 399
Eco57I	CTGAAG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	246, 401
EcoT14I	CCWWGG	3 cut(s)	148, 154, 365
ErhI	CCWWGG	3 cut(s)	148, 154, 365
FaeI	CATG	3 cut(s)	152, 316, 340
FaiI	YATR	9 cut(s)	41, 150, 187, 314, 338, 360, 362, 377, 445
FatI	CATG	3 cut(s)	148, 312, 336
FauNDI	CATATG	1 cut(s)	360
FokI	GGATG	2 cut(s)	49, 131
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	153, 317, 422
HapII	CCGG	2 cut(s)	212, 240
Hin1II	CATG	3 cut(s)	152, 316, 340
HinfI	GANTC	2 cut(s)	170, 274
HpaII	CCGG	2 cut(s)	212, 240
HphI	GGTGA	3 cut(s)	111, 154, 382
Hpy166II	GTNNAC	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	132, 411
HpyCH4III	ACNGT	3 cut(s)	198, 307, 387
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	129, 253
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	152, 316, 340
Kzo9I	GATC	1 cut(s)	285
LweI	GCATC	2 cut(s)	168, 250
MabI	ACCWGGT	2 cut(s)	246, 401
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	4 cut(s)	21, 214, 271, 387
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	164, 268
MnlI	CCTC	4 cut(s)	37, 84, 328, 390
MspI	CCGG	2 cut(s)	212, 240
MspR9I	CCNGG	3 cut(s)	241, 248, 403
MvaI	CCWGG	2 cut(s)	248, 403
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	148
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	3 cut(s)	152, 316, 340
NlaIV	GGNNCC	2 cut(s)	48, 245
NmuCI	GTSAC	2 cut(s)	21, 271
NspI	RCATGY	1 cut(s)	340
PleI	GAGTC	2 cut(s)	164, 268
PpsI	GAGTC	2 cut(s)	164, 268
PpuMI	RGGWCCY	1 cut(s)	399
Psp1406I	AACGTT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	246, 401
PspGI	CCWGG	2 cut(s)	246, 401
PspN4I	GGNNCC	2 cut(s)	48, 245
PspPI	GGNCC	3 cut(s)	189, 399, 420
PspPPI	RGGWCCY	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	3 cut(s)	189, 399, 420
SchI	GAGTC	2 cut(s)	164, 268
ScrFI	CCNGG	3 cut(s)	241, 248, 403
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	7 cut(s)	48, 124, 135, 183, 231, 249, 404
SexAI	ACCWGGT	2 cut(s)	246, 401
SfaNI	GCATC	2 cut(s)	168, 250
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	2 cut(s)	189, 399
Sse9I	AATT	1 cut(s)	436
StyD4I	CCNGG	3 cut(s)	239, 246, 401
StyI	CCWWGG	3 cut(s)	148, 154, 365
TaaI	ACNGT	3 cut(s)	198, 307, 387
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	436
TscAI	CASTG	2 cut(s)	399, 418
TseFI	GTSAC	2 cut(s)	21, 271
Tsp45I	GTSAC	2 cut(s)	21, 271
TspRI	CASTG	2 cut(s)	399, 418
VpaK11BI	GGWCC	2 cut(s)	189, 399
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.