Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Forward (+)

67420097 .. 67421520

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGACTATTTTGCAAATCAGTTCACTGAACCTGTGAAACTTGGTGCAAGTTTATCACTATGTCAATCTCTATGCTCTCAAAATTGTACTTGCTTGGCCTTGTTCCATGGAAAATCTTCTGGTTCTTGTTATCTAGTTGAAAACAATTTGGGTTTCATCATATACAGCTCTAGTAGCCAGAAAGATCGAATAGGGTACAAAAAGGCGGTAGTGCCTTGGTCTGGTCATGAGAAACACAATATTCCAGTGTTACATTTGGTAATGATAATGACTATGCTGTTAATCGTCATAGTGGTCATGAGACTCATATGGTGGAGAAAGAAAAAGCATACTAGAGCAAGTGTAGATGTATGGAATTTATCTTCATCAACAGAGCTTGAGATATCCTCTATTCCGGGTTTGCCCATTAGATTTAATTATGAAGAGCTTGTCACCGCAACTGAAAATTTTAAGACCCAAATTGGCAGTGGTGGCTTTAGTACTGTATATAAAGGTACTATACCAGACAACAATGCAGTGGCTGTGAAAAAGATTACAAGTTTGGGAGTCCGAGGGAAGGAGTTTTTCACTGAGACTGCAACAATGGGAAGCATCTACCACATCAATCTGGTTAGTTTGAGAGGTTTCTGCATCCACGGAAGCCAGTGTTTTCTGGTTTATGAGTATATGAATAGAGGTTCATTGGAGAAGTTTCTCTTGGGCAATGGCCCTGTTTTGGATTGGGAAAAGAGATATGGGATAGCGCTTGGAATGGCCAGGGGGCTTGCTTACTTGCACAGTGGATGCAATCCCAAGATAGTCCACTGTGACATCAAACCGGAAAACATACTTCTGCATGATGATTTACAAGTGAAGATATCAGACTTTGGGGTTTCCAAGTTTATAAGTTACGAAAAATCCAAACTGTTGACGACATTGAGAGGAACTCAGGGATATCTTTCGCCTGAATGGCTTACTAGCTATGGCATTAAATTGGTGAGGGGAAGAAGAAATTGCTTGTTTCAAAGTGGTGGCACCGGAAATGAAGACACTAATGGAAATGAAAGATGTTTCAATCCAATCAGTTCGGAAGAAAGAATGGTGTACTTCCCACAACTTGCACTCCAAATGCATAAGAAAATGAGGTATATGGAACTAGCTGACCCGAGGTTAGAGGGTCGTGTGAGGAGTGAGGAGGTTGAGAAGCTAGTGAGGGTAGCCTTGTGTTGTGTGCATGTAGGGCCAACACTGAGGCCAAGTATGACCAATTCGGTTGCTATGTTGGAAGGCAGATTACCTATAGCTGAGCCTAGGAATATTGAAGCATTAGAATTCTTGCGGTCCTATGGTGGAAATGTTTCAGAGGCATCCAGCAAGCTAACAAAAGTGGGATGTGCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

460

Amino Acids

51.49

Weight (kDa)

8.93

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	150 - 319	1.9e-32	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	151 - 320	4.3e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	884
AccB1I	GGYRCC	1 cut(s)	1013
AciI	CCGC	3 cut(s)	206, 435, 1318
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	3 cut(s)	355, 445, 1310
AfaI	GTAC	5 cut(s)	88, 197, 481, 496, 1085
AfeI	AGCGCT	1 cut(s)	744
AfiI	CCNNNNNNNGG	3 cut(s)	221, 556, 715
AgsI	TTSAA	4 cut(s)	140, 1004, 1054, 1301
AjnI	CCWGG	1 cut(s)	755
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	8 cut(s)	168, 376, 427, 960, 1139, 1186, 1283, 1357
AluI	AGCT	8 cut(s)	168, 376, 427, 960, 1139, 1186, 1283, 1357
Alw26I	GTCTC	2 cut(s)	295, 566
AlwNI	CAGNNNCTG	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	1144
Aor51HI	AGCGCT	1 cut(s)	744
AoxI	GGCC	5 cut(s)	96, 706, 753, 1220, 1232
ApoI	RAATTY	3 cut(s)	355, 445, 1310
Asp700I	GAANNNNTTC	2 cut(s)	115, 1336
AspA2I	CCTAGG	1 cut(s)	1289
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	3 cut(s)	707, 1220, 1320
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	424, 988
AvaI	CYCGRG	1 cut(s)	1144
AvaII	GGWCC	1 cut(s)	1320
AvrII	CCTAGG	1 cut(s)	1289
BalI	TGGCCA	1 cut(s)	755
BanI	GGYRCC	1 cut(s)	1013
BarI	GAAGNNNNNNTAC	2 cut(s)	1257, 1289
BbsI	GAAGAC	1 cut(s)	1032
BciT130I	CCWGG	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	295, 566
BfaI	CTAG	7 cut(s)	134, 171, 333, 957, 1136, 1187, 1290
BfmI	CTRYAG	1 cut(s)	1278
BfoI	RGCGCY	1 cut(s)	746
BglI	GCCNNNNNGGC	1 cut(s)	949
BlnI	CCTAGG	1 cut(s)	1289
BlpI	GCTNAGC	1 cut(s)	1284
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	396, 757
Bme18I	GGWCC	1 cut(s)	1320
BmeT110I	CYCGRG	1 cut(s)	1144
BmgT120I	GGNCC	3 cut(s)	707, 1220, 1320
BmiI	GGNNCC	1 cut(s)	1015
BmrFI	CCNGG	2 cut(s)	396, 757
BmsI	GCATC	4 cut(s)	600, 639, 773, 1355
BpiI	GAAGAC	1 cut(s)	1032
BplI	GAGNNNNNCTC	4 cut(s)	371, 403, 910, 942
Bpu1102I	GCTNAGC	1 cut(s)	1284
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	396
BsaJI	CCNNGG	7 cut(s)	106, 215, 550, 634, 756, 1145, 1289
BsaWI	WCCGGW	2 cut(s)	817, 1016
BsaXI	ACNNNNNCTCC	2 cut(s)	1086, 1116
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 556, 715
Bse1I	ACTGG	2 cut(s)	245, 643
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	757
BseDI	CCNNGG	7 cut(s)	106, 215, 550, 634, 756, 1145, 1289
BseGI	GGATG	4 cut(s)	630, 788, 1346, 1376
BseLI	CCNNNNNNNGG	3 cut(s)	221, 556, 715
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	4 cut(s)	561, 941, 1220, 1275
BseNI	ACTGG	2 cut(s)	245, 643
BseRI	GAGGAG	2 cut(s)	1180, 1187
BshFI	GGCC	5 cut(s)	98, 708, 755, 1222, 1234
BshNI	GGYRCC	1 cut(s)	1013
BsiHKCI	CYCGRG	1 cut(s)	1144
BsiSI	CCGG	3 cut(s)	395, 818, 1017
BslI	CCNNNNNNNGG	3 cut(s)	221, 556, 715
BsmAI	GTCTC	2 cut(s)	295, 566
BsnI	GGCC	5 cut(s)	98, 708, 755, 1222, 1234
BsoBI	CYCGRG	1 cut(s)	1144
Bsp143I	GATC	1 cut(s)	184
Bsp1720I	GCTNAGC	1 cut(s)	1284
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	3 cut(s)	206, 435, 1318
BspANI	GGCC	5 cut(s)	98, 708, 755, 1222, 1234
BspCNI	CTCAG	4 cut(s)	562, 940, 1221, 1276
BspHI	TCATGA	2 cut(s)	226, 297
BspLI	GGNNCC	1 cut(s)	1015
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	1013
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	245, 643
BssECI	CCNNGG	7 cut(s)	106, 215, 550, 634, 756, 1145, 1289
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	3 cut(s)	106, 215, 1289
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	4 cut(s)	484, 779, 806, 906
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	765, 1355
BstDEI	CTNAG	4 cut(s)	570, 927, 1229, 1284
BstDSI	CCRYGG	2 cut(s)	106, 634
BstF5I	GGATG	4 cut(s)	630, 788, 1346, 1376
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	295, 566
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 471, 949, 1219
BstNI	CCWGG	1 cut(s)	757
BstNSI	RCATGY	1 cut(s)	1217
BstSCI	CCNGG	2 cut(s)	394, 755
BstSFI	CTRYAG	1 cut(s)	1278
BstV2I	GAAGAC	1 cut(s)	1032
BsuRI	GGCC	5 cut(s)	98, 708, 755, 1222, 1234
BtgI	CCRYGG	2 cut(s)	106, 634
BtsCI	GGATG	4 cut(s)	630, 788, 1346, 1376
BtsI	GCAGTG	2 cut(s)	472, 522
BtsIMutI	CAGTG	9 cut(s)	24, 252, 472, 522, 567, 650, 784, 802, 1226
Cac8I	GCNNGC	2 cut(s)	765, 1355
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	2 cut(s)	226, 297
CfoI	GCGC	1 cut(s)	745
Cfr13I	GGNCC	3 cut(s)	707, 1220, 1320
Csp6I	GTAC	5 cut(s)	87, 196, 480, 495, 1084
CviAII	CATG	5 cut(s)	107, 227, 298, 836, 1214
CviQI	GTAC	5 cut(s)	87, 196, 480, 495, 1084
DdeI	CTNAG	4 cut(s)	570, 927, 1229, 1284
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	3 cut(s)	106, 215, 1289
Eco32I	GATATC	3 cut(s)	384, 858, 935
Eco47I	GGWCC	1 cut(s)	1320
Eco47III	AGCGCT	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	1144
EcoRI	GAATTC	1 cut(s)	1310
EcoRII	CCWGG	1 cut(s)	755
EcoRV	GATATC	3 cut(s)	384, 858, 935
EcoT14I	CCWWGG	3 cut(s)	106, 215, 1289
EcoT22I	ATGCAT	1 cut(s)	1113
ErhI	CCWWGG	3 cut(s)	106, 215, 1289
FaeI	CATG	5 cut(s)	110, 230, 301, 839, 1217
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FatI	CATG	5 cut(s)	106, 226, 297, 835, 1213
FauNDI	CATATG	1 cut(s)	308
FokI	GGATG	3 cut(s)	617, 795, 1333
FspBI	CTAG	7 cut(s)	134, 171, 333, 957, 1136, 1187, 1290
GlaI	GCGC	1 cut(s)	744
HaeII	RGCGCY	1 cut(s)	746
HaeIII	GGCC	5 cut(s)	98, 708, 755, 1222, 1234
HapII	CCGG	3 cut(s)	395, 818, 1017
HhaI	GCGC	1 cut(s)	745
Hin1II	CATG	5 cut(s)	110, 230, 301, 839, 1217
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HinfI	GANTC	2 cut(s)	303, 546
HpaII	CCGG	3 cut(s)	395, 818, 1017
HphI	GGTGA	2 cut(s)	424, 988
Hpy166II	GTNNAC	4 cut(s)	24, 802, 909, 1084
Hpy188I	TCNGA	4 cut(s)	551, 862, 1069, 1342
Hpy188III	TCNNGA	2 cut(s)	227, 298
Hpy8I	GTNNAC	4 cut(s)	24, 802, 909, 1084
HpyAV	CCTTC	2 cut(s)	550, 1259
HpyCH4III	ACNGT	4 cut(s)	484, 779, 806, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 471, 949, 1219
HpyF3I	CTNAG	4 cut(s)	570, 927, 1229, 1284
Hsp92II	CATG	5 cut(s)	110, 230, 301, 839, 1217
HspAI	GCGC	1 cut(s)	743
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	417
LweI	GCATC	4 cut(s)	600, 639, 773, 1355
MaeI	CTAG	7 cut(s)	134, 171, 333, 957, 1136, 1187, 1290
MaeIII	GTNAC	4 cut(s)	249, 430, 806, 887
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	8 cut(s)	108, 354, 434, 865, 996, 999, 1037, 1082
MlsI	TGGCCA	1 cut(s)	755
MluNI	TGGCCA	1 cut(s)	755
MlyI	GAGTC	2 cut(s)	297, 555
MmeI	TCCRAC	1 cut(s)	1242
Mox20I	TGGCCA	1 cut(s)	755
Mph1103I	ATGCAT	1 cut(s)	1113
MroXI	GAANNNNTTC	2 cut(s)	115, 1336
MscI	TGGCCA	1 cut(s)	755
MseI	TTAA	4 cut(s)	281, 414, 450, 969
Msp20I	TGGCCA	1 cut(s)	755
MspI	CCGG	3 cut(s)	395, 818, 1017
MspR9I	CCNGG	2 cut(s)	396, 757
MvaI	CCWGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	4 cut(s)	174, 471, 949, 1219
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	5 cut(s)	110, 230, 301, 839, 1217
NlaIV	GGNNCC	1 cut(s)	1015
NmuCI	GTSAC	2 cut(s)	430, 806
NsiI	ATGCAT	1 cut(s)	1113
NspI	RCATGY	1 cut(s)	1217
PagI	TCATGA	2 cut(s)	226, 297
PciSI	GCTCTTC	1 cut(s)	417
PdmI	GAANNNNTTC	2 cut(s)	115, 1336
PleI	GAGTC	2 cut(s)	297, 554
PpsI	GAGTC	2 cut(s)	297, 554
PsiI	TTATAA	1 cut(s)	884
Psp6I	CCWGG	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	1015
PspPI	GGNCC	3 cut(s)	707, 1220, 1320
PstNI	CAGNNNCTG	1 cut(s)	521
RsaI	GTAC	5 cut(s)	88, 197, 481, 496, 1085
RsaNI	GTAC	5 cut(s)	87, 196, 480, 495, 1084
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	4 cut(s)	281, 414, 450, 969
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	3 cut(s)	707, 1220, 1320
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	2 cut(s)	297, 555
ScrFI	CCNGG	2 cut(s)	396, 757
SfaNI	GCATC	4 cut(s)	600, 639, 773, 1355
SfcI	CTRYAG	1 cut(s)	1278
SinI	GGWCC	1 cut(s)	1320
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SsiI	CCGC	3 cut(s)	206, 435, 1318
SspI	AATATT	2 cut(s)	241, 1297
SspMI	CTAG	7 cut(s)	134, 171, 333, 957, 1136, 1187, 1290
StyD4I	CCNGG	2 cut(s)	394, 755
StyI	CCWWGG	3 cut(s)	106, 215, 1289
TaaI	ACNGT	4 cut(s)	484, 779, 806, 906
TaqI	TCGA	1 cut(s)	187
TatI	WGTACW	3 cut(s)	86, 479, 1083
Tru1I	TTAA	4 cut(s)	281, 414, 450, 969
Tru9I	TTAA	4 cut(s)	281, 414, 450, 969
TscAI	CASTG	9 cut(s)	31, 252, 472, 522, 574, 650, 784, 809, 1233
TseFI	GTSAC	2 cut(s)	430, 806
Tsp45I	GTSAC	2 cut(s)	430, 806
TspDTI	ATGAA	7 cut(s)	145, 354, 435, 669, 683, 1038, 1056
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	9 cut(s)	31, 252, 472, 522, 574, 650, 784, 809, 1233
VpaK11BI	GGWCC	1 cut(s)	1320
XapI	RAATTY	3 cut(s)	355, 445, 1310
XceI	RCATGY	1 cut(s)	1217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmaJI	CCTAGG	1 cut(s)	1289
XmnI	GAANNNNTTC	2 cut(s)	115, 1336
XspI	CTAG	7 cut(s)	134, 171, 333, 957, 1136, 1187, 1290
ZrmI	AGTACT	1 cut(s)	481
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.