Rh7BG376500

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001098
Physical Location & Seq
Reverse (-)
40521039 .. 40530232
9194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG376500.1

Sequence Viewer

Length: 1677 bp
ATGGAAGCTCTCGCTAAATGTGAGCTTCAGCAGCCAAACAACTGCACCCTTAAGGAACTTGGGATTTTAACTCGATGTGATTGTGCTTGGTCTTGGGATTGTTGGGAAGGGCAACACCCGTCGCCATTGGAGCGGCTAGGTCTCCAAATCAAGGAAGAAGCTGTGTACTCCTCCCTTCTTTCACTGTCTCAGAACCCATCCATACTCACTCCATTGTTCCAAATTTCACAGCCACCTATCTCGAATTCATTGAGAATTCTGGTGCTTTCTTGGCCTCCAGTAATGGCACTTTCAAAGCCTTTATCACTAAAGAAAGTTTGTATAGAGGTTCCTACTTCTCTGTCATCCACACAGCCTCTAACACTACCATCTGGCAGGGCAACGAAAAAAATACCCATTTCACCTTCTGCGAAGGTTTTACTAACCATCCATGGCCTTAGCATCACCAATGACTCAAACAACGTTGTATGGTCCACACCGTTATTGAACTCTCTGGTTACTGCTCTCCAGCTTTTAGAAACGGGGAACCTGGTCTTAGTTGATGCTCAAAATGTGACTCTCTGGGAGAGTTTTGAGCACCCTACAGATACAGTTGTCATGGGTCAAAGATTGCATGTTGGTAAATCTCTGCTTACACGCAGGGACCATGCCAAGGGTGATTATAGTCTTGCAGTTATCAGTGAGGATCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCATGGGCACAAATGCTATCAAGTACGCAAGTGTGGTAGTGTCCTTTATGCCAATGAATGGAACTGGTTTGTATCTGCTTGGGAATAATGGCTCAGAAGTAGTGTTTCATTTTCTGTTGGAACTCTCAGATATGAGCTTTGCCAAATTGGACTCTAGTGGGATATTATACATATCGAATATCTTTGAGCGTATTTGGTTTTCCAACATTGATAAGTGCCAATATCCAGAAGCTTGTGGGAAAATGGGATTATGCACAAATCAGACTTGTACATGTCCAACTGGTTTCTCCCATGTTGATCCTGAGAAAGACCTTGAGTGTCTGCAACTGAAAGAGTCGACACTGTCCTTGCCTTCTGCTTGTAATGAAAGTGGTGATGGTACCAATGGATTCAATTCCTCAATTGTTTATTTGAAGCTGGATAAAGGTATGGACTATTTTGCAAATCAGTTCACTGAACCTGTGAAACTTGGTGCAAGTTTATCACTATGTCAATCTCTATGCTCTCAAAATTGTACTTGCTTGGCCTTTTTCCATGGAAAATCTTCTGGTTCTTGTTATCTAGTTGAAAACAATTTGGGTTTCATCATATACAGCTCTAGTAGCCAGGAAGATCGAATAGGGTACATAAAGGCGGTAGGGCCTTGGTCTGGTCATGAGAAACACAGTATTCCAGTGTTACATTTGAAAATGAGGTATATGGAACTAGCTGACCCAAGGTTAGAGGGCCGTGTGAGGAGTGAGGAGGTTGAGAAGCTAGTGAGGGTAGCCTTGTGTTGTGTGCATGTAGGACCAACACTGAGGCCAAGTATGACCAATGTGGTGGCTATGTTGGAAGGCAGATTACCTATAGCTGAGCCTAGGATTGAAGCATTAGAATTCTTGCAGTCCTACGGTGGAACTGTCTCAGAGGCATCCAGCAAGCTAACAAAAGTGGGATGTGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin Pkinase

Protein Analysis

558

Amino Acids

61.36

Weight (kDa)

6.0

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 130 - 208 2e-12 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1106
AccB1I GGYRCC 1 cut(s) 1106
AccB7I CCANNNNNTGG 1 cut(s) 785
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 1064
AciI CCGC 2 cut(s) 133, 1361
AclI AACGTT 1 cut(s) 462
AclWI GGATC 2 cut(s) 693, 1019
AcsI RAATTY 4 cut(s) 222, 244, 255, 1604
AcuI CTGAAG 2 cut(s) 11, 680
AfaI GTAC 6 cut(s) 167, 752, 997, 1108, 1243, 1352
AfiI CCNNNNNNNGG 4 cut(s) 151, 652, 785, 1376
AflII CTTAAG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 998
AgsI TTSAA 7 cut(s) 294, 487, 1120, 1141, 1295, 1414, 1595
AjnI CCWGG 2 cut(s) 528, 1332
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 3 cut(s) 146, 192, 1636
AlwI GGATC 2 cut(s) 693, 1019
AoxI GGCC 7 cut(s) 272, 433, 706, 1251, 1367, 1453, 1529
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 4 cut(s) 222, 244, 255, 1604
Asp700I GAANNNNTTC 1 cut(s) 1270
Asp718I GGTACC 1 cut(s) 1106
AspA2I CCTAGG 1 cut(s) 1586
AspS9I GGNCC 6 cut(s) 471, 643, 706, 1367, 1453, 1517
AsuHPI GGTGA 4 cut(s) 393, 436, 668, 1112
AvaII GGWCC 3 cut(s) 471, 643, 1517
AvrII CCTAGG 1 cut(s) 1586
BaeGI GKGCMC 1 cut(s) 737
BaeI ACNNNNGTAYC 2 cut(s) 579, 612
BanI GGYRCC 1 cut(s) 1106
BarI GAAGNNNNNNTAC 2 cut(s) 1554, 1586
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 43
BccI CCATC 4 cut(s) 205, 376, 434, 1097
BceAI ACGGC 1 cut(s) 1440
BciT130I CCWGG 2 cut(s) 530, 1334
BcoDI GTCTC 3 cut(s) 146, 192, 1636
BfaI CTAG 7 cut(s) 137, 882, 1289, 1326, 1433, 1484, 1587
BfmI CTRYAG 2 cut(s) 582, 1575
BfrI CTTAAG 1 cut(s) 50
BisI GCNGC 2 cut(s) 32, 134
BlnI CCTAGG 1 cut(s) 1586
BlpI GCTNAGC 1 cut(s) 1581
BlsI GCNGC 2 cut(s) 33, 135
Bme1390I CCNGG 2 cut(s) 530, 1334
Bme18I GGWCC 3 cut(s) 471, 643, 1517
BmgT120I GGNCC 6 cut(s) 471, 643, 706, 1367, 1453, 1517
BmiI GGNNCC 4 cut(s) 330, 527, 644, 1108
BmrFI CCNGG 2 cut(s) 530, 1334
BmsI GCATC 3 cut(s) 450, 532, 1649
BpmI CTGGAG 2 cut(s) 261, 491
Bpu10I CCTNAGC 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 1581
BpuEI CTTGAG 1 cut(s) 1061
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 652, 785, 1376
Bse1I ACTGG 4 cut(s) 278, 796, 1012, 1400
BseBI CCWGG 2 cut(s) 530, 1334
BseDI CCNNGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
BseGI GGATG 5 cut(s) 197, 344, 426, 1640, 1670
BseLI CCNNNNNNNGG 4 cut(s) 151, 652, 785, 1376
BseMII CTCAG 7 cut(s) 203, 834, 867, 1020, 1517, 1572, 1647
BseNI ACTGG 4 cut(s) 278, 796, 1012, 1400
BseRI GAGGAG 3 cut(s) 160, 1477, 1484
BseSI GKGCMC 1 cut(s) 737
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 7 cut(s) 274, 435, 708, 1253, 1369, 1455, 1531
BshNI GGYRCC 1 cut(s) 1106
BsiHKAI GWGCWC 1 cut(s) 579
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 4 cut(s) 151, 652, 785, 1376
BsmAI GTCTC 3 cut(s) 146, 192, 1636
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 7 cut(s) 274, 435, 708, 1253, 1369, 1455, 1531
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 579, 737
Bsp1407I TGTACA 1 cut(s) 995
Bsp143I GATC 3 cut(s) 685, 1024, 1339
Bsp1720I GCTNAGC 1 cut(s) 1581
Bsp19I CCATGG 3 cut(s) 430, 729, 1261
BspACI CCGC 2 cut(s) 133, 1361
BspANI GGCC 7 cut(s) 274, 435, 708, 1253, 1369, 1455, 1531
BspCNI CTCAG 7 cut(s) 202, 833, 866, 1021, 1518, 1573, 1646
BspHI TCATGA 1 cut(s) 1381
BspLI GGNNCC 4 cut(s) 330, 527, 644, 1108
BspPI GGATC 2 cut(s) 693, 1019
BspT107I GGYRCC 1 cut(s) 1106
BspTI CTTAAG 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 995
BsrI ACTGG 4 cut(s) 278, 796, 1012, 1400
BssECI CCNNGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
BssMI GATC 3 cut(s) 685, 1024, 1339
BssT1I CCWWGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
Bst2UI CCWGG 2 cut(s) 530, 1334
Bst4CI ACNGT 7 cut(s) 186, 480, 592, 1071, 1394, 1622, 1630
BstAFI CTTAAG 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 995
BstC8I GCNNGC 1 cut(s) 1649
BstDEI CTNAG 9 cut(s) 189, 437, 535, 820, 853, 1029, 1526, 1581, 1633
BstDSI CCRYGG 3 cut(s) 430, 729, 1261
BstF5I GGATG 5 cut(s) 197, 344, 426, 1640, 1670
BstKTI GATC 3 cut(s) 688, 1027, 1342
BstMAI GTCTC 3 cut(s) 146, 192, 1636
BstMBI GATC 3 cut(s) 685, 1024, 1339
BstMWI GCNNNNNNNGC 4 cut(s) 31, 130, 271, 1329
BstNI CCWGG 2 cut(s) 530, 1334
BstNSI RCATGY 3 cut(s) 617, 1002, 1514
BstSCI CCNGG 2 cut(s) 528, 1332
BstSFI CTRYAG 2 cut(s) 582, 1575
BstSLI GKGCMC 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 1549
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 7 cut(s) 274, 435, 708, 1253, 1369, 1455, 1531
BtgI CCRYGG 3 cut(s) 430, 729, 1261
BtsCI GGATG 5 cut(s) 197, 344, 426, 1640, 1670
BtsIMutI CAGTG 7 cut(s) 182, 685, 704, 1067, 1179, 1407, 1523
Cac8I GCNNGC 1 cut(s) 1649
CciI TCATGA 1 cut(s) 1381
Cfr13I GGNCC 6 cut(s) 471, 643, 706, 1367, 1453, 1517
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 6 cut(s) 166, 751, 996, 1107, 1242, 1351
CviQI GTAC 6 cut(s) 166, 751, 996, 1107, 1242, 1351
DdeI CTNAG 9 cut(s) 189, 437, 535, 820, 853, 1029, 1526, 1581, 1633
DpnI GATC 3 cut(s) 687, 1026, 1341
DpnII GATC 3 cut(s) 685, 1024, 1339
Eco130I CCWWGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 3 cut(s) 471, 643, 1517
Eco57I CTGAAG 2 cut(s) 11, 680
EcoO109I RGGNCCY 1 cut(s) 1367
EcoRI GAATTC 3 cut(s) 244, 255, 1604
EcoRII CCWGG 2 cut(s) 528, 1332
EcoT14I CCWWGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
ErhI CCWWGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
FaqI GGGAC 1 cut(s) 656
FblI GTMKAC 1 cut(s) 1064
Fnu4HI GCNGC 2 cut(s) 32, 134
FokI GGATG 4 cut(s) 184, 331, 413, 1627
Fsp4HI GCNGC 2 cut(s) 32, 134
FspBI CTAG 7 cut(s) 137, 882, 1289, 1326, 1433, 1484, 1587
GluI GCNGC 2 cut(s) 32, 134
GsuI CTGGAG 2 cut(s) 261, 491
HaeIII GGCC 7 cut(s) 274, 435, 708, 1253, 1369, 1455, 1531
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HindIII AAGCTT 1 cut(s) 957
HinfI GANTC 5 cut(s) 452, 556, 878, 1061, 1116
HphI GGTGA 4 cut(s) 393, 436, 668, 1112
Hpy166II GTNNAC 4 cut(s) 166, 474, 1065, 1179
Hpy188I TCNGA 5 cut(s) 192, 823, 856, 990, 1636
Hpy188III TCNNGA 4 cut(s) 241, 953, 1028, 1382
Hpy8I GTNNAC 4 cut(s) 166, 474, 1065, 1179
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 7 cut(s) 101, 185, 406, 414, 697, 1089, 1556
HpyCH4III ACNGT 7 cut(s) 186, 480, 592, 1071, 1394, 1622, 1630
HpyCH4IV ACGT 1 cut(s) 462
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 130, 271, 1329
HpyF3I CTNAG 9 cut(s) 189, 437, 535, 820, 853, 1029, 1526, 1581, 1633
HpySE526I ACGT 1 cut(s) 462
KpnI GGTACC 1 cut(s) 1110
Kzo9I GATC 3 cut(s) 685, 1024, 1339
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 3 cut(s) 450, 532, 1649
MabI ACCWGGT 1 cut(s) 528
MaeI CTAG 7 cut(s) 137, 882, 1289, 1326, 1433, 1484, 1587
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 3 cut(s) 496, 553, 1404
MalI GATC 3 cut(s) 687, 1026, 1341
MbiI CCGCTC 1 cut(s) 133
MboI GATC 3 cut(s) 685, 1024, 1339
MboII GAAGA 3 cut(s) 167, 1263, 1349
MfeI CAATTG 1 cut(s) 1128
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 579, 737
MlyI GAGTC 4 cut(s) 446, 550, 872, 1070
MmeI TCCRAC 4 cut(s) 825, 954, 1028, 1539
MroXI GAANNNNTTC 1 cut(s) 1270
MseI TTAA 2 cut(s) 51, 68
MspCI CTTAAG 1 cut(s) 50
MspR9I CCNGG 2 cut(s) 530, 1334
MunI CAATTG 1 cut(s) 1128
MvaI CCWGG 2 cut(s) 530, 1334
MwoI GCNNNNNNNGC 4 cut(s) 31, 130, 271, 1329
NcoI CCATGG 3 cut(s) 430, 729, 1261
NdeII GATC 3 cut(s) 685, 1024, 1339
NlaIV GGNNCC 4 cut(s) 330, 527, 644, 1108
NmuCI GTSAC 1 cut(s) 553
NspI RCATGY 3 cut(s) 617, 1002, 1514
PagI TCATGA 1 cut(s) 1381
PciI ACATGT 1 cut(s) 998
PdmI GAANNNNTTC 1 cut(s) 1270
PfeI GAWTC 1 cut(s) 1116
PflFI GACNNNGTC 1 cut(s) 1069
PflMI CCANNNNNTGG 1 cut(s) 785
PkrI GCNGC 2 cut(s) 33, 135
PleI GAGTC 4 cut(s) 446, 550, 872, 1069
PpsI GAGTC 4 cut(s) 446, 550, 872, 1069
PscI ACATGT 1 cut(s) 998
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 528, 1332
PspGI CCWGG 2 cut(s) 528, 1332
PspN4I GGNNCC 4 cut(s) 330, 527, 644, 1108
PspPI GGNCC 6 cut(s) 471, 643, 706, 1367, 1453, 1517
PsuI RGATCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 1069
RsaI GTAC 6 cut(s) 167, 752, 997, 1108, 1243, 1352
RsaNI GTAC 6 cut(s) 166, 751, 996, 1107, 1242, 1351
SalI GTCGAC 1 cut(s) 1063
SaqAI TTAA 2 cut(s) 51, 68
SatI GCNGC 2 cut(s) 32, 134
Sau3AI GATC 3 cut(s) 685, 1024, 1339
Sau96I GGNCC 6 cut(s) 471, 643, 706, 1367, 1453, 1517
SchI GAGTC 4 cut(s) 446, 550, 872, 1070
ScrFI CCNGG 2 cut(s) 530, 1334
SduI GDGCHC 2 cut(s) 579, 737
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 3 cut(s) 450, 532, 1649
SfcI CTRYAG 2 cut(s) 582, 1575
SinI GGWCC 3 cut(s) 471, 643, 1517
SmlI CTYRAG 2 cut(s) 50, 1040
SmoI CTYRAG 2 cut(s) 50, 1040
SsiI CCGC 2 cut(s) 133, 1361
SspMI CTAG 7 cut(s) 137, 882, 1289, 1326, 1433, 1484, 1587
StyD4I CCNGG 2 cut(s) 528, 1332
StyI CCWWGG 7 cut(s) 430, 651, 729, 1261, 1370, 1442, 1586
TaaI ACNGT 7 cut(s) 186, 480, 592, 1071, 1394, 1622, 1630
TaiI ACGT 1 cut(s) 465
TaqI TCGA 5 cut(s) 73, 242, 902, 1064, 1342
TatI WGTACW 3 cut(s) 165, 995, 1241
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 1116
Tru1I TTAA 2 cut(s) 51, 68
Tru9I TTAA 2 cut(s) 51, 68
TscAI CASTG 7 cut(s) 189, 685, 704, 1074, 1186, 1407, 1530
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 5 cut(s) 237, 797, 824, 1107, 1300
TspRI CASTG 7 cut(s) 189, 685, 704, 1074, 1186, 1407, 1530
Tth111I GACNNNGTC 1 cut(s) 1069
Van91I CCANNNNNTGG 1 cut(s) 785
Vha464I CTTAAG 1 cut(s) 50
VpaK11BI GGWCC 3 cut(s) 471, 643, 1517
XapI RAATTY 4 cut(s) 222, 244, 255, 1604
XceI RCATGY 3 cut(s) 617, 1002, 1514
XmaJI CCTAGG 1 cut(s) 1586
XmiI GTMKAC 1 cut(s) 1064
XmnI GAANNNNTTC 1 cut(s) 1270
XspI CTAG 7 cut(s) 137, 882, 1289, 1326, 1433, 1484, 1587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.