Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

53545516 .. 53547474

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG390900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGTGCTGCAATGGAAGGGCCAGACTTATGCGAAATTTTCCATGGATACAGAAGCTTACAAGAACTCAAATACCCCCGTGTCTTATATGGAAATGAACAGTACTGGTTTGCATTTGGTTGGGGGAGATGGCTTGCAGGTGGTTGTTCAAGTTCTTTTGGTACCATCAGATACAAAGATTGCCAAGTTGGGAAATGAAGGGGTTTTCAGAATCAACAACATGGATGTCAACAACATGGTGGCGGATTTTGCAATGCCAATAGATACTTGCCAAGTTCCATTCACATGTGGAAAAATGGGATTATGCATGAATCAGACGTGCATATGCCCTTCAGGTTTTTCCCACAAGGAATTGAATAACAATGGTTGTGTGCCAAAACAAGTCTTAGAAGAGACAATCTCTTTGCCTTCTGCTTGTACTGCAAGAGGTAATGTTAGTGAATTCAATTCCTCGACTTTTTATGTGGAAATGCAAAATGGTATAGACTACTTTGTTAATCATTTCACTGAGCCTGTTAAGTATGGAGTGAACTTATCGCTATGTCAGAATCTATGCTCACAAAATTGTTCTTGCCCCGGCATTTTCCATAAAAATTCATCTGGTTCTTGTTATCTTCTTGATTACAATTTGGGTTCCTTCGTGTTAAACTCTGATGCTCAGGGAGGTCCATTAGGGTACATAAAGGCTTTCCTAAACGTTTCGACTGAGCATAAGAAACATAGTTTTCCAATGTCAGCTTTGGTGGTGATCATAATGTTGTCGGGGTTGTTCATGATAATCACCATGGTGGTCCTAGTAATTATATGGTTGAGAAAGAAAAGGTCTACTGGAGTAAATTTAGACAGATGGGATTCATCTTCATCAGCAGAGCTGGAGATGATCTCTATTCCGGGTTTGCCCAGGAGGTTTAATAATGAAGAGCTTGTAGCTGCAACAGAAAATTTTAAGAGCCAAATTGGCAGTGGAGGATTTGGTACAGTATATAAAGAAATGCATAAGCTAAAGAGATACATGGAACTAACAGACCCGAGGTTAGAGGGTCATGTGAGGAGTGAGGAAGTTGAGAAGCTAGTAAAGGTAGCCTTGTGTTGTGTGCATGTAGTGCCAACACTGAGGCCAAGTATGAGCAATGTGGTTGCTATGTTGGAAGGCAGATTACCAGTAGGGGAGCCCAGGATTGAGGCACTTGAATTTTTACAGCTCTATGGTGGAAAATTAAACGAGGCATCCAGAAAGCTTAGAGGGAGGGGTTCAGTAGTAGAAGAAGAAGTTCGTTCTCTTATGGCAGAGGAACTTACATACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

435

Amino Acids

48.2

Weight (kDa)

6.34

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	824
AciI	CCGC	1 cut(s)	242
AclI	AACGTT	1 cut(s)	696
AcsI	RAATTY	6 cut(s)	35, 440, 592, 835, 940, 1190
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	5 cut(s)	103, 162, 418, 677, 976
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	149, 355, 445, 1190
AjiI	CACGTC	1 cut(s)	318
AjnI	CCWGG	2 cut(s)	899, 1172
AleI	CACNNNNGTG	1 cut(s)	785
AluBI	AGCT	9 cut(s)	56, 737, 871, 922, 929, 1000, 1069, 1201, 1237
AluI	AGCT	9 cut(s)	56, 737, 871, 922, 929, 1000, 1069, 1201, 1237
Alw26I	GTCTC	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	1027
AoxI	GGCC	2 cut(s)	19, 1115
ApeKI	GCWGC	2 cut(s)	7, 929
ApoI	RAATTY	6 cut(s)	35, 440, 592, 835, 940, 1190
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
Asp700I	GAANNNNTTC	1 cut(s)	1269
Asp718I	GGTACC	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	19, 665, 790
AsuC2I	CCSGG	2 cut(s)	576, 891
AsuHPI	GGTGA	2 cut(s)	757, 772
AvaI	CYCGRG	1 cut(s)	1027
AvaII	GGWCC	2 cut(s)	665, 790
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	1173
BarI	GAAGNNNNNNTAC	2 cut(s)	1140, 1172
BbvI	GCAGC	1 cut(s)	916
BccI	CCATC	3 cut(s)	122, 172, 840
BciT130I	CCWGG	2 cut(s)	901, 1174
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	747
BcnI	CCSGG	2 cut(s)	576, 891
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	2 cut(s)	794, 1070
BfuAI	ACCTGC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	957
BisI	GCNGC	2 cut(s)	8, 930
BlsI	GCNGC	2 cut(s)	9, 931
BmcAI	AGTACT	1 cut(s)	103
Bme1390I	CCNGG	4 cut(s)	576, 891, 901, 1174
Bme18I	GGWCC	2 cut(s)	665, 790
BmeT110I	CYCGRG	1 cut(s)	1027
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	3 cut(s)	19, 665, 790
BmiI	GGNNCC	3 cut(s)	162, 634, 1170
BmrFI	CCNGG	4 cut(s)	576, 891, 901, 1174
BmsI	GCATC	2 cut(s)	643, 1235
BplI	GAGNNNNNCTC	4 cut(s)	383, 415, 866, 898
BpmI	CTGGAG	2 cut(s)	849, 893
Bpu10I	CCTNAGC	1 cut(s)	657
BpuMI	CCSGG	2 cut(s)	576, 891
BsaJI	CCNNGG	6 cut(s)	42, 574, 783, 899, 1028, 1172
Bse1I	ACTGG	3 cut(s)	109, 832, 1160
Bse3DI	GCAATG	3 cut(s)	17, 258, 1135
BseBI	CCWGG	2 cut(s)	901, 1174
BseDI	CCNNGG	6 cut(s)	42, 574, 783, 899, 1028, 1172
BseGI	GGATG	2 cut(s)	229, 1226
BseMI	GCAATG	3 cut(s)	17, 258, 1135
BseMII	CTCAG	4 cut(s)	498, 671, 696, 1103
BseNI	ACTGG	3 cut(s)	109, 832, 1160
BseRI	GAGGAG	1 cut(s)	1063
BseXI	GCAGC	1 cut(s)	916
BshFI	GGCC	2 cut(s)	21, 1117
BshNI	GGYRCC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	1027
BsiSI	CCGG	2 cut(s)	576, 890
BsmAI	GTCTC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	21, 1117
BsoBI	CYCGRG	1 cut(s)	1027
Bsp1286I	GDGCHC	1 cut(s)	1173
Bsp143I	GATC	2 cut(s)	747, 879
Bsp19I	CCATGG	2 cut(s)	42, 783
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	21, 1117
BspCNI	CTCAG	4 cut(s)	499, 670, 697, 1104
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	162, 634, 1170
BspMI	ACCTGC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	912
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	3 cut(s)	17, 258, 1135
BsrI	ACTGG	3 cut(s)	109, 832, 1160
BssECI	CCNNGG	6 cut(s)	42, 574, 783, 899, 1028, 1172
BssMI	GATC	2 cut(s)	747, 879
BssT1I	CCWWGG	2 cut(s)	42, 783
Bst2UI	CCWGG	2 cut(s)	901, 1174
Bst4CI	ACNGT	2 cut(s)	101, 979
Bst6I	CTCTTC	2 cut(s)	384, 912
BstAPI	GCANNNNNTGC	1 cut(s)	1102
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	6 cut(s)	385, 507, 657, 705, 1112, 1238
BstDSI	CCRYGG	2 cut(s)	42, 783
BstF5I	GGATG	2 cut(s)	229, 1226
BstKTI	GATC	2 cut(s)	750, 882
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	747, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 419, 957, 1102
BstNI	CCWGG	2 cut(s)	901, 1174
BstNSI	RCATGY	2 cut(s)	288, 1100
BstSCI	CCNGG	4 cut(s)	574, 889, 899, 1172
BstV1I	GCAGC	1 cut(s)	916
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	21, 1117
BtgI	CCRYGG	2 cut(s)	42, 783
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	229, 1226
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	3 cut(s)	504, 967, 1109
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	771
Cfr13I	GGNCC	3 cut(s)	19, 665, 790
Csp6I	GTAC	5 cut(s)	102, 161, 417, 676, 975
CviQI	GTAC	5 cut(s)	102, 161, 417, 676, 975
DdeI	CTNAG	6 cut(s)	385, 507, 657, 705, 1112, 1238
DpnI	GATC	2 cut(s)	749, 881
DpnII	GATC	2 cut(s)	747, 879
Eam1104I	CTCTTC	2 cut(s)	384, 912
EarI	CTCTTC	2 cut(s)	384, 912
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	42, 783
Eco24I	GRGCYC	1 cut(s)	1173
Eco47I	GGWCC	2 cut(s)	665, 790
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	1027
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	899, 1172
EcoT14I	CCWWGG	2 cut(s)	42, 783
EcoT22I	ATGCAT	2 cut(s)	308, 996
EcoT38I	GRGCYC	1 cut(s)	1173
ErhI	CCWWGG	2 cut(s)	42, 783
FalI	AAGNNNNNCTT	2 cut(s)	1067, 1099
FauNDI	CATATG	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	747
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	2 cut(s)	8, 930
FokI	GGATG	2 cut(s)	236, 1213
FriOI	GRGCYC	1 cut(s)	1173
Fsp4HI	GCNGC	2 cut(s)	8, 930
FspBI	CTAG	2 cut(s)	794, 1070
GluI	GCNGC	2 cut(s)	8, 930
GsuI	CTGGAG	2 cut(s)	849, 893
HaeIII	GGCC	2 cut(s)	21, 1117
HapII	CCGG	2 cut(s)	576, 890
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	2 cut(s)	54, 1235
HinfI	GANTC	4 cut(s)	210, 310, 547, 851
HpaII	CCGG	2 cut(s)	576, 890
HphI	GGTGA	2 cut(s)	757, 772
Hpy166II	GTNNAC	3 cut(s)	229, 529, 825
Hpy188I	TCNGA	6 cut(s)	169, 209, 315, 546, 652, 1307
Hpy188III	TCNNGA	3 cut(s)	617, 772, 1230
Hpy8I	GTNNAC	3 cut(s)	229, 529, 825
HpyAV	CCTTC	6 cut(s)	10, 191, 339, 417, 646, 1142
HpyCH4III	ACNGT	2 cut(s)	101, 979
HpyCH4IV	ACGT	2 cut(s)	317, 696
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 419, 957, 1102
HpyF3I	CTNAG	6 cut(s)	385, 507, 657, 705, 1112, 1238
HpySE526I	ACGT	2 cut(s)	317, 696
KpnI	GGTACC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	2 cut(s)	747, 879
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	1 cut(s)	1168
Lsp1109I	GCAGC	1 cut(s)	916
LweI	GCATC	2 cut(s)	643, 1235
MaeI	CTAG	2 cut(s)	794, 1070
MaeII	ACGT	2 cut(s)	317, 696
MalI	GATC	2 cut(s)	749, 881
MboI	GATC	2 cut(s)	747, 879
MboII	GAAGA	6 cut(s)	401, 605, 849, 929, 1274, 1277
MhlI	GDGCHC	1 cut(s)	1173
MmeI	TCCRAC	1 cut(s)	1125
Mph1103I	ATGCAT	2 cut(s)	308, 996
MroXI	GAANNNNTTC	1 cut(s)	1269
MseI	TTAA	6 cut(s)	495, 516, 644, 909, 945, 1217
MslI	CAYNNNNRTG	2 cut(s)	283, 785
MspI	CCGG	2 cut(s)	576, 890
MspR9I	CCNGG	4 cut(s)	576, 891, 901, 1174
MvaI	CCWGG	2 cut(s)	901, 1174
MwoI	GCNNNNNNNGC	4 cut(s)	248, 419, 957, 1102
NciI	CCSGG	2 cut(s)	576, 891
NcoI	CCATGG	2 cut(s)	42, 783
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	2 cut(s)	747, 879
NlaIV	GGNNCC	3 cut(s)	162, 634, 1170
NsiI	ATGCAT	2 cut(s)	308, 996
NspI	RCATGY	2 cut(s)	288, 1100
OliI	CACNNNNGTG	1 cut(s)	785
PagI	TCATGA	1 cut(s)	771
PaqCI	CACCTGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	912
PdmI	GAANNNNTTC	1 cut(s)	1269
PfeI	GAWTC	4 cut(s)	210, 310, 547, 851
PkrI	GCNGC	2 cut(s)	9, 931
PscI	ACATGT	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	899, 1172
PspGI	CCWGG	2 cut(s)	899, 1172
PspN4I	GGNNCC	3 cut(s)	162, 634, 1170
PspPI	GGNCC	3 cut(s)	19, 665, 790
RsaI	GTAC	5 cut(s)	103, 162, 418, 677, 976
RsaNI	GTAC	5 cut(s)	102, 161, 417, 676, 975
RseI	CAYNNNNRTG	2 cut(s)	283, 785
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	6 cut(s)	495, 516, 644, 909, 945, 1217
SatI	GCNGC	2 cut(s)	8, 930
Sau3AI	GATC	2 cut(s)	747, 879
Sau96I	GGNCC	3 cut(s)	19, 665, 790
ScaI	AGTACT	1 cut(s)	103
ScrFI	CCNGG	4 cut(s)	576, 891, 901, 1174
SduI	GDGCHC	1 cut(s)	1173
SfaNI	GCATC	2 cut(s)	643, 1235
SinI	GGWCC	2 cut(s)	665, 790
SmiMI	CAYNNNNRTG	2 cut(s)	283, 785
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	794, 1070
StyD4I	CCNGG	4 cut(s)	574, 889, 899, 1172
StyI	CCWWGG	2 cut(s)	42, 783
TaaI	ACNGT	2 cut(s)	101, 979
TaiI	ACGT	2 cut(s)	320, 699
TaqI	TCGA	2 cut(s)	452, 701
TatI	WGTACW	2 cut(s)	101, 416
TfiI	GAWTC	4 cut(s)	210, 310, 547, 851
Tru1I	TTAA	6 cut(s)	495, 516, 644, 909, 945, 1217
Tru9I	TTAA	6 cut(s)	495, 516, 644, 909, 945, 1217
TscAI	CASTG	3 cut(s)	511, 967, 1116
TseI	GCWGC	2 cut(s)	7, 929
TspDTI	ATGAA	8 cut(s)	110, 210, 323, 585, 760, 843, 849, 930
TspRI	CASTG	3 cut(s)	511, 967, 1116
VpaK11BI	GGWCC	2 cut(s)	665, 790
XapI	RAATTY	6 cut(s)	35, 440, 592, 835, 940, 1190
XceI	RCATGY	2 cut(s)	288, 1100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	1269
XspI	CTAG	2 cut(s)	794, 1070
ZrmI	AGTACT	1 cut(s)	103
Zsp2I	ATGCAT	2 cut(s)	308, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.