Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

53223646 .. 53225283

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG389300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGTCCGCACCGTTATTGACCTGGTCTTAGCTGATGCTCAAAATGTGACTCTCTGGGAGAGTTTTGAGCACCCTACAGATACAGTTGTCATGGGTCAAAGATTGCATGTTGGTAAATCTCTGCTTACACGCAGGGACCATGCCAAGGGTGATTATAGTCTTGCAGTTACCAGTGAGGATCTGGTGCTTCAGTGGAAGGGCCAGACTTATCGGAAATTATCCATGGGCACAAATGCTATCAAGTACGCAAGTGTGCCAGTGTCCTTTATGACAATGAATGGAACTGGTTTGTATCTGCTTGGGAATAATGGCTCAGAAGTAGTGTTTCATTTTCTGTTGGAACTCTCAGATATGAGCTTTGCCAAATTGGACTCTAGTGGGATATTATACATATCGAATATCTTTGAGTGTATTTGGTTTTCCGACATTGATAAGTGCCAATATCAAGAAGCTTGTGGAAAAATGGGATTATGCACAAATCAGACGTGTACATGTCCAACTGGTTTCTCCCATGTTGATCCTGAGAAAGACCTTGAGTGTCTGCAACTGAAAGAGTCGACACTGTCTTTGCCTTCTGCTTGTAATGAAAGTGGGGATGGTACCAATGGATTCAAGTCCTCAATTGTTTTTTTGAAGCTGGATAAAGAGCTTGTCGCCGCAACTGAAAATTTTAAGACCAAAATTGGCAGTGGTGGCTTTAGTACTGTATATAAAGGTACTATACCAGACAACAATGCAGTGGCTGTGAAAAAGATTACAAGTTTGGGAGTTCGAGGGAAGAAGGAGTTTTTTACTGAGACTGCAACAATGGGAAGCATCTACCACATCAATCTGATTAGTTTGAGAGGTTTCTGCATCCAAGGAAGCCAGTGTTTTCTGGTTTATGAGTATATGAATAGAGGTTCATTGGAGAAGGTTCTTTTGATTGCAATCCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTCACACAGTGTGGGAAAAGACATTTGAGATGATTCCTTCTGATGCTGTGGAGAAGCTTATAGAAGGGGAAGAAGTTGCATGTAGATGCTGGGCTCATAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

358

Amino Acids

39.82

Weight (kDa)

5.96

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	224 - 321	2.5e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	225 - 307	4e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	2 cut(s)	7, 657
AclWI	GGATC	2 cut(s)	186, 512
AcsI	RAATTY	1 cut(s)	667
AcuI	CTGAAG	2 cut(s)	173, 968
AdeI	CACNNNGTG	2 cut(s)	979, 981
AfaI	GTAC	5 cut(s)	245, 490, 601, 703, 718
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	2 cut(s)	485, 491
AgsI	TTSAA	2 cut(s)	613, 634
AjiI	CACGTC	1 cut(s)	486
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	927, 959
AluBI	AGCT	7 cut(s)	32, 357, 452, 637, 649, 955, 1027
AluI	AGCT	7 cut(s)	32, 357, 452, 637, 649, 955, 1027
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	791, 961
AlwI	GGATC	2 cut(s)	186, 512
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	667
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
Asp718I	GGTACC	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	4, 136, 199
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	4, 136
BaeGI	GKGCMC	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	1066
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	590
BciT130I	CCWGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	791, 961
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	657
BlsI	GCNGC	1 cut(s)	658
BmcAI	AGTACT	1 cut(s)	703
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	2 cut(s)	4, 136
BmgBI	CACGTC	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	4, 136, 199
BmiI	GGNNCC	2 cut(s)	137, 601
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	5 cut(s)	25, 825, 864, 1003, 1046
BpuEI	CTTGAG	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	929
BsaJI	CCNNGG	3 cut(s)	144, 222, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	5 cut(s)	171, 257, 289, 505, 868
Bse8I	GATNNNNATC	1 cut(s)	929
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	144, 222, 859
BseGI	GGATG	2 cut(s)	601, 855
BseJI	GATNNNNATC	1 cut(s)	929
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	4 cut(s)	327, 360, 513, 786
BseNI	ACTGG	5 cut(s)	171, 257, 289, 505, 868
BseSI	GKGCMC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	1059
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	791, 961
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	72, 230, 1066
Bsp1407I	TGTACA	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	178, 517
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	2 cut(s)	7, 657
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	4 cut(s)	326, 359, 514, 787
BspLI	GGNNCC	2 cut(s)	137, 601
BspPI	GGATC	2 cut(s)	186, 512
BspT107I	GGYRCC	1 cut(s)	599
BsrGI	TGTACA	1 cut(s)	488
BsrI	ACTGG	5 cut(s)	171, 257, 289, 505, 868
BssECI	CCNNGG	3 cut(s)	144, 222, 859
BssMI	GATC	2 cut(s)	178, 517
BssT1I	CCWWGG	3 cut(s)	144, 222, 859
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	5 cut(s)	13, 85, 564, 706, 979
BstAUI	TGTACA	1 cut(s)	488
BstDEI	CTNAG	5 cut(s)	28, 313, 346, 522, 795
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	601, 855
BstKTI	GATC	2 cut(s)	181, 520
BstMAI	GTCTC	2 cut(s)	791, 961
BstMBI	GATC	2 cut(s)	178, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	693
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	3 cut(s)	110, 495, 1053
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	601, 855
BtsI	GCAGTG	2 cut(s)	694, 744
BtsIMutI	CAGTG	8 cut(s)	178, 197, 264, 560, 694, 744, 875, 984
CaiI	CAGNNNCTG	1 cut(s)	743
Cfr13I	GGNCC	3 cut(s)	4, 136, 199
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	5 cut(s)	244, 489, 600, 702, 717
CviAII	CATG	7 cut(s)	91, 107, 140, 223, 492, 512, 1050
CviQI	GTAC	5 cut(s)	244, 489, 600, 702, 717
DdeI	CTNAG	5 cut(s)	28, 313, 346, 522, 795
DpnI	GATC	2 cut(s)	180, 519
DpnII	GATC	2 cut(s)	178, 517
DraIII	CACNNNGTG	2 cut(s)	979, 981
Eco130I	CCWWGG	3 cut(s)	144, 222, 859
Eco24I	GRGCYC	1 cut(s)	1066
Eco47I	GGWCC	2 cut(s)	4, 136
Eco57I	CTGAAG	2 cut(s)	173, 968
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	3 cut(s)	144, 222, 859
EcoT38I	GRGCYC	1 cut(s)	1066
ErhI	CCWWGG	3 cut(s)	144, 222, 859
FaeI	CATG	7 cut(s)	94, 110, 143, 226, 495, 515, 1053
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	7 cut(s)	90, 106, 139, 222, 491, 511, 1049
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	2 cut(s)	608, 842
FriOI	GRGCYC	1 cut(s)	1066
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	657
GsaI	CCCAGC	1 cut(s)	1063
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	7 cut(s)	94, 110, 143, 226, 495, 515, 1053
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HindIII	AAGCTT	2 cut(s)	450, 1025
HinfI	GANTC	5 cut(s)	49, 371, 554, 609, 1003
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	489, 558
Hpy188I	TCNGA	8 cut(s)	213, 316, 349, 424, 483, 834, 948, 1012
Hpy188III	TCNNGA	2 cut(s)	446, 521
Hpy8I	GTNNAC	2 cut(s)	489, 558
HpyAV	CCTTC	7 cut(s)	190, 582, 775, 907, 953, 1017, 1028
HpyCH4III	ACNGT	5 cut(s)	13, 85, 564, 706, 979
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	9 cut(s)	106, 164, 474, 544, 737, 803, 855, 929, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	693
HpyF3I	CTNAG	5 cut(s)	28, 313, 346, 522, 795
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	7 cut(s)	94, 110, 143, 226, 495, 515, 1053
KpnI	GGTACC	1 cut(s)	603
Kzo9I	GATC	2 cut(s)	178, 517
LweI	GCATC	5 cut(s)	25, 825, 864, 1003, 1046
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	46, 166
MalI	GATC	2 cut(s)	180, 519
MboI	GATC	2 cut(s)	178, 517
MboII	GAAGA	3 cut(s)	790, 961, 1052
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	3 cut(s)	72, 230, 1066
MluCI	AATT	5 cut(s)	215, 365, 621, 667, 681
MlyI	GAGTC	3 cut(s)	43, 365, 563
MmeI	TCCRAC	4 cut(s)	318, 447, 521, 958
MnlI	CCTC	5 cut(s)	169, 628, 767, 839, 893
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	1054
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	693
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	178, 517
NlaIII	CATG	7 cut(s)	94, 110, 143, 226, 495, 515, 1053
NlaIV	GGNNCC	2 cut(s)	137, 601
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	3 cut(s)	110, 495, 1053
PciI	ACATGT	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	609, 1003
PflFI	GACNNNGTC	2 cut(s)	23, 562
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	3 cut(s)	43, 365, 562
PpsI	GAGTC	3 cut(s)	43, 365, 562
PscI	ACATGT	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	1059
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	137, 601
PspPI	GGNCC	3 cut(s)	4, 136, 199
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	178
PsyI	GACNNNGTC	2 cut(s)	23, 562
RsaI	GTAC	5 cut(s)	245, 490, 601, 703, 718
RsaNI	GTAC	5 cut(s)	244, 489, 600, 702, 717
RseI	CAYNNNNRTG	1 cut(s)	1054
SalI	GTCGAC	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	2 cut(s)	178, 517
Sau96I	GGNCC	3 cut(s)	4, 136, 199
ScaI	AGTACT	1 cut(s)	703
SchI	GAGTC	3 cut(s)	43, 365, 563
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	3 cut(s)	72, 230, 1066
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	5 cut(s)	25, 825, 864, 1003, 1046
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	4, 136
SmiMI	CAYNNNNRTG	1 cut(s)	1054
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	5 cut(s)	215, 365, 621, 667, 681
SsiI	CCGC	2 cut(s)	7, 657
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	3 cut(s)	144, 222, 859
TaaI	ACNGT	5 cut(s)	13, 85, 564, 706, 979
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	395, 557, 772
TasI	AATT	5 cut(s)	215, 365, 621, 667, 681
TatI	WGTACW	2 cut(s)	488, 701
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	2 cut(s)	609, 1003
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	8 cut(s)	178, 197, 264, 567, 694, 744, 875, 984
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	5 cut(s)	290, 317, 600, 894, 908
TspRI	CASTG	8 cut(s)	178, 197, 264, 567, 694, 744, 875, 984
Tth111I	GACNNNGTC	2 cut(s)	23, 562
VpaK11BI	GGWCC	2 cut(s)	4, 136
XapI	RAATTY	1 cut(s)	667
XceI	RCATGY	3 cut(s)	110, 495, 1053
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	1 cut(s)	375
ZrmI	AGTACT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.