RLG00000001645

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
18696130 .. 18698014
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001645

Sequence Viewer

Length: 1353 bp
ATGGCACTTTCAAAGCCTTTATCACTAAAGAAAGTTTGCATAGAGGTTCCTACTTCTCTGTCATCCACACAGCCTCTAACACTACCATCTGGCAGGGCAACGAAAAAAATACCCATTTCACCTTCTGCTAAGGTTTTACTAACTATCCATGGCCTTAGCATCACCAATGACTCAAACAACGTTGTATGGTCCGCACCGTTATTGAACTCTCCGGTTACTGCTCTCCAGCTTTTACAAACCGGGAACCTGGTCTTAGTTGATGCTCAAAATGTGACTCTCTGGGAGAGTTTTGAGCACCCTACAGATACAGTTGTCATGGGTCAAAGATTGCATGTTGGTAAATCTCTGCTTACATATGCCAGGGGAAATTATAGTCTTACAGTTACCAGTGAGGACCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCATAGGGACACATGAGATCAAGTACGCAAGTGTGCCAGTGTCCTTTATGATAATGAATGGAACTGCGCAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATATTTTTTATTAGAAATTACAACCCGGAACAAAATGAGGATAATGTATCGGCAAGAATGTTAGACCACAAAGAAGCTATCATATCCCATTTAAGTTGGACGTGTACATGTCCAACTGGTTTCTCCCATGTTGATCCTGAGAAAGACCTTGAGTGTGTGCAACTGAAAGAGACACTGTCGGTGCCTTCTGCTTGTAATGAAAGTGGGGATGGTACCAATGGATTCAAGTCCTCAATTGTTTATTTGAAGCTGGACAAAGGTATGGACTATTTTGCAAATCAGTTCACTGAACCTGAGAACAGTATTCCAGTGTTAGATTTGGTAATGATAATCATCATAGTGGTCATGAGACTCATCTGGTGGAGAAAGAAAAAGCGTACTAGAGCAAATGTAGATGTATGGAATTCATCTTCATCATCAGAGCTTGAGATATCCTCTATCCCGGGTACTATACCAGATAACAATGCAGTGGCTGTGAAAAAGATTACAAGTTTGGGAGTCCGAGGGAAGGAGTTTTTTCCGGAGACTGCAACAATGGGAAGCGTCTACCACATCAATCTTGCTAGCTTGAGCGGTTTCTGCATCCAAGGAAGCCGGTGTTTTCTGGTTTATGAGTATATGAATAGAGGTCCATTGGAGAAGATTCTCTTTAGCAATGGCCCTGTTTTGGATTGGGAAAAAAGATATGGGATAGCGCTTGGAATGGCAAGGGGGACTTGCTTACTTGCACAGTGGATGCAATCCCAAGATAGTCCACTGTGA

Protein Analysis

451

Amino Acids

49.82

Weight (kDa)

7.15

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 36 - 114 8e-12 D-mannose binding lectin
PsaA_PsaB PF00223 148 - 234 1.4e-31 Photosystem I psaA/psaB protein
PK_Tyr_Ser-Thr PF07714 351 - 440 4.3e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 2 cut(s) 772, 803
AccBSI CCGCTC 1 cut(s) 1164
AccI GTMKAC 1 cut(s) 1137
AccIII TCCGGA 1 cut(s) 1111
AciI CCGC 2 cut(s) 192, 1164
AclI AACGTT 1 cut(s) 180
AclWI GGATC 1 cut(s) 719
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 5 cut(s) 461, 697, 805, 970, 1039
AfeI AGCGCT 1 cut(s) 1287
AfiI CCNNNNNNNGG 2 cut(s) 1099, 1258
AflIII ACRYGT 2 cut(s) 692, 698
AgsI TTSAA 4 cut(s) 12, 205, 817, 838
AjiI CACGTC 1 cut(s) 693
AjnI CCWGG 3 cut(s) 246, 359, 396
AluBI AGCT 7 cut(s) 229, 524, 590, 668, 841, 1015, 1158
AluI AGCT 7 cut(s) 229, 524, 590, 668, 841, 1015, 1158
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 3 cut(s) 755, 934, 1109
AlwI GGATC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 1064
Ama87I CYCGRG 1 cut(s) 1033
Aor13HI TCCGGA 1 cut(s) 1111
Aor51HI AGCGCT 1 cut(s) 1287
AoxI GGCC 3 cut(s) 151, 415, 1249
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 994
Asp718I GGTACC 1 cut(s) 803
AspLEI GCGC 2 cut(s) 505, 1288
AspS9I GGNCC 5 cut(s) 189, 394, 415, 1220, 1250
AsuC2I CCSGG 4 cut(s) 241, 617, 1034, 1035
AsuHPI GGTGA 3 cut(s) 111, 154, 533
AsuNHI GCTAGC 1 cut(s) 1154
AvaI CYCGRG 1 cut(s) 1033
AvaII GGWCC 3 cut(s) 189, 394, 1220
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BanI GGYRCC 2 cut(s) 772, 803
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 94, 794
BciT130I CCWGG 3 cut(s) 248, 361, 398
BcnI CCSGG 4 cut(s) 241, 617, 1034, 1035
BcoDI GTCTC 3 cut(s) 755, 934, 1109
BfaI CTAG 2 cut(s) 972, 1155
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 1289
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 7 cut(s) 241, 248, 361, 398, 617, 1034, 1035
Bme18I GGWCC 3 cut(s) 189, 394, 1220
BmeT110I CYCGRG 1 cut(s) 1033
BmgBI CACGTC 1 cut(s) 693
BmgT120I GGNCC 5 cut(s) 189, 394, 415, 1220, 1250
BmiI GGNNCC 4 cut(s) 48, 245, 774, 805
BmrFI CCNGG 7 cut(s) 241, 248, 361, 398, 617, 1034, 1035
BmsI GCATC 4 cut(s) 168, 250, 1182, 1317
BmtI GCTAGC 1 cut(s) 1158
BplI GAGNNNNNCTC 2 cut(s) 1010, 1042
BpmI CTGGAG 1 cut(s) 209
Bpu10I CCTNAGC 2 cut(s) 129, 155
BpuEI CTTGAG 4 cut(s) 504, 761, 1037, 1180
BpuMI CCSGG 4 cut(s) 241, 617, 1034, 1035
BsaBI GATNNNNATC 1 cut(s) 923
BsaJI CCNNGG 5 cut(s) 148, 360, 1033, 1093, 1177
BsaWI WCCGGW 2 cut(s) 211, 1111
Bsc4I CCNNNNNNNGG 2 cut(s) 1099, 1258
Bse118I RCCGGY 1 cut(s) 1185
Bse1I ACTGG 4 cut(s) 387, 473, 712, 899
Bse3DI GCAATG 1 cut(s) 1252
Bse8I GATNNNNATC 1 cut(s) 923
BseAI TCCGGA 1 cut(s) 1111
BseBI CCWGG 3 cut(s) 248, 361, 398
BseDI CCNNGG 5 cut(s) 148, 360, 1033, 1093, 1177
BseGI GGATG 4 cut(s) 62, 805, 1173, 1332
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 2 cut(s) 1099, 1258
BseMI GCAATG 1 cut(s) 1252
BseMII CTCAG 2 cut(s) 720, 876
BseNI ACTGG 4 cut(s) 387, 473, 712, 899
BseXI GCAGC 1 cut(s) 511
BshFI GGCC 3 cut(s) 153, 417, 1251
BshNI GGYRCC 2 cut(s) 772, 803
BsiHKAI GWGCWC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 1033
BsiSI CCGG 6 cut(s) 212, 240, 617, 1034, 1112, 1186
BslFI GGGAC 2 cut(s) 457, 1318
BslI CCNNNNNNNGG 2 cut(s) 1099, 1258
BsmAI GTCTC 3 cut(s) 755, 934, 1109
BsmFI GGGAC 2 cut(s) 457, 1318
BsnI GGCC 3 cut(s) 153, 417, 1251
BsoBI CYCGRG 1 cut(s) 1033
Bsp1286I GDGCHC 1 cut(s) 297
Bsp13I TCCGGA 1 cut(s) 1111
Bsp1407I TGTACA 1 cut(s) 695
Bsp143I GATC 2 cut(s) 453, 724
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 2 cut(s) 192, 1164
BspANI GGCC 3 cut(s) 153, 417, 1251
BspCNI CTCAG 2 cut(s) 721, 877
BspEI TCCGGA 1 cut(s) 1111
BspHI TCATGA 1 cut(s) 936
BspLI GGNNCC 4 cut(s) 48, 245, 774, 805
BspOI GCTAGC 1 cut(s) 1158
BspPI GGATC 1 cut(s) 719
BspT107I GGYRCC 2 cut(s) 772, 803
BsrBI CCGCTC 1 cut(s) 1164
BsrDI GCAATG 1 cut(s) 1252
BsrFI RCCGGY 1 cut(s) 1185
BsrGI TGTACA 1 cut(s) 695
BsrI ACTGG 4 cut(s) 387, 473, 712, 899
BssAI RCCGGY 1 cut(s) 1185
BssECI CCNNGG 5 cut(s) 148, 360, 1033, 1093, 1177
BssMI GATC 2 cut(s) 453, 724
BssT1I CCWWGG 2 cut(s) 148, 1177
Bst2UI CCWGG 3 cut(s) 248, 361, 398
Bst4CI ACNGT 7 cut(s) 198, 310, 382, 768, 893, 1323, 1350
BstAUI TGTACA 1 cut(s) 695
BstC8I GCNNGC 1 cut(s) 1156
BstDEI CTNAG 5 cut(s) 129, 155, 253, 729, 885
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 4 cut(s) 62, 805, 1173, 1332
BstH2I RGCGCY 1 cut(s) 1289
BstHHI GCGC 2 cut(s) 505, 1288
BstKTI GATC 2 cut(s) 456, 727
BstMAI GTCTC 3 cut(s) 755, 934, 1109
BstMBI GATC 2 cut(s) 453, 724
BstMWI GCNNNNNNNGC 2 cut(s) 587, 1170
BstNI CCWGG 3 cut(s) 248, 361, 398
BstNSI RCATGY 2 cut(s) 335, 702
BstSCI CCNGG 7 cut(s) 239, 246, 359, 396, 615, 1032, 1033
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 511
BsuRI GGCC 3 cut(s) 153, 417, 1251
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 535
BtrI CACGTC 1 cut(s) 693
BtsCI GGATG 4 cut(s) 62, 805, 1173, 1332
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 9 cut(s) 394, 413, 480, 764, 876, 906, 1065, 1328, 1346
Cac8I GCNNGC 1 cut(s) 1156
CaiI CAGNNNCTG 1 cut(s) 1064
CciI TCATGA 1 cut(s) 936
CfoI GCGC 2 cut(s) 505, 1288
Cfr10I RCCGGY 1 cut(s) 1185
Cfr13I GGNCC 5 cut(s) 189, 394, 415, 1220, 1250
Cfr9I CCCGGG 1 cut(s) 1033
CseI GACGC 1 cut(s) 1123
CsiI ACCWGGT 2 cut(s) 246, 396
Csp6I GTAC 5 cut(s) 460, 696, 804, 969, 1038
CviAII CATG 7 cut(s) 149, 316, 332, 449, 699, 719, 937
CviQI GTAC 5 cut(s) 460, 696, 804, 969, 1038
DdeI CTNAG 5 cut(s) 129, 155, 253, 729, 885
DpnI GATC 2 cut(s) 455, 726
DpnII GATC 2 cut(s) 453, 724
Eco130I CCWWGG 2 cut(s) 148, 1177
Eco32I GATATC 1 cut(s) 1023
Eco47I GGWCC 3 cut(s) 189, 394, 1220
Eco47III AGCGCT 1 cut(s) 1287
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 1033
EcoO109I RGGNCCY 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 3 cut(s) 246, 359, 396
EcoRV GATATC 1 cut(s) 1023
EcoT14I CCWWGG 2 cut(s) 148, 1177
ErhI CCWWGG 2 cut(s) 148, 1177
FaeI CATG 7 cut(s) 152, 319, 335, 452, 702, 722, 940
FalI AAGNNNNNCTT 4 cut(s) 1223, 1255, 1291, 1323
FaqI GGGAC 2 cut(s) 457, 1318
FatI CATG 7 cut(s) 148, 315, 331, 448, 698, 718, 936
FauNDI CATATG 1 cut(s) 355
FblI GTMKAC 1 cut(s) 1137
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 4 cut(s) 49, 812, 1160, 1339
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 2 cut(s) 972, 1155
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 2 cut(s) 504, 1287
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 1289
HaeIII GGCC 3 cut(s) 153, 417, 1251
HapII CCGG 6 cut(s) 212, 240, 617, 1034, 1112, 1186
HgaI GACGC 1 cut(s) 1123
HhaI GCGC 2 cut(s) 505, 1288
Hin1II CATG 7 cut(s) 152, 319, 335, 452, 702, 722, 940
Hin6I GCGC 2 cut(s) 503, 1286
HinP1I GCGC 2 cut(s) 503, 1286
HinfI GANTC 7 cut(s) 170, 274, 558, 813, 942, 1089, 1234
HpaII CCGG 6 cut(s) 212, 240, 617, 1034, 1112, 1186
HphI GGTGA 3 cut(s) 111, 154, 533
Hpy166II GTNNAC 4 cut(s) 696, 876, 1138, 1346
Hpy188I TCNGA 2 cut(s) 1012, 1094
Hpy188III TCNNGA 3 cut(s) 728, 937, 1112
Hpy8I GTNNAC 4 cut(s) 696, 876, 1138, 1346
HpyAV CCTTC 4 cut(s) 132, 406, 786, 1093
HpyCH4III ACNGT 7 cut(s) 198, 310, 382, 768, 893, 1323, 1350
HpyCH4IV ACGT 2 cut(s) 180, 692
HpyCH4V TGCA 9 cut(s) 39, 331, 751, 866, 1058, 1121, 1173, 1319, 1330
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 1170
HpyF3I CTNAG 5 cut(s) 129, 155, 253, 729, 885
HpySE526I ACGT 2 cut(s) 180, 692
Hsp92II CATG 7 cut(s) 152, 319, 335, 452, 702, 722, 940
HspAI GCGC 2 cut(s) 503, 1286
Kpn2I TCCGGA 1 cut(s) 1111
KpnI GGTACC 1 cut(s) 807
Kzo9I GATC 2 cut(s) 453, 724
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 4 cut(s) 168, 250, 1182, 1317
MabI ACCWGGT 2 cut(s) 246, 396
MaeI CTAG 2 cut(s) 972, 1155
MaeII ACGT 2 cut(s) 180, 692
MaeIII GTNAC 3 cut(s) 214, 271, 382
MalI GATC 2 cut(s) 455, 726
MbiI CCGCTC 1 cut(s) 1164
MboI GATC 2 cut(s) 453, 724
MboII GAAGA 2 cut(s) 993, 1243
MfeI CAATTG 1 cut(s) 825
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 5 cut(s) 367, 431, 607, 825, 994
MlyI GAGTC 4 cut(s) 164, 268, 936, 1098
MmeI TCCRAC 2 cut(s) 668, 728
MnlI CCTC 8 cut(s) 37, 84, 385, 622, 832, 1036, 1088, 1211
MroI TCCGGA 1 cut(s) 1111
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 1 cut(s) 929
MspI CCGG 6 cut(s) 212, 240, 617, 1034, 1112, 1186
MspR9I CCNGG 7 cut(s) 241, 248, 361, 398, 617, 1034, 1035
MunI CAATTG 1 cut(s) 825
MvaI CCWGG 3 cut(s) 248, 361, 398
MwoI GCNNNNNNNGC 2 cut(s) 587, 1170
NciI CCSGG 4 cut(s) 241, 617, 1034, 1035
NcoI CCATGG 1 cut(s) 148
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 453, 724
NheI GCTAGC 1 cut(s) 1154
NlaIII CATG 7 cut(s) 152, 319, 335, 452, 702, 722, 940
NlaIV GGNNCC 4 cut(s) 48, 245, 774, 805
NmuCI GTSAC 1 cut(s) 271
NsbI TGCGCA 1 cut(s) 504
NspI RCATGY 2 cut(s) 335, 702
PagI TCATGA 1 cut(s) 936
PciI ACATGT 1 cut(s) 698
PfeI GAWTC 3 cut(s) 558, 813, 1234
PflFI GACNNNGTC 1 cut(s) 766
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 4 cut(s) 164, 268, 936, 1097
PpsI GAGTC 4 cut(s) 164, 268, 936, 1097
PpuMI RGGWCCY 1 cut(s) 394
PscI ACATGT 1 cut(s) 698
Psp1406I AACGTT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 246, 359, 396
PspGI CCWGG 3 cut(s) 246, 359, 396
PspN4I GGNNCC 4 cut(s) 48, 245, 774, 805
PspPI GGNCC 5 cut(s) 189, 394, 415, 1220, 1250
PspPPI RGGWCCY 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 1064
PsyI GACNNNGTC 1 cut(s) 766
RsaI GTAC 5 cut(s) 461, 697, 805, 970, 1039
RsaNI GTAC 5 cut(s) 460, 696, 804, 969, 1038
RseI CAYNNNNRTG 1 cut(s) 929
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 2 cut(s) 453, 724
Sau96I GGNCC 5 cut(s) 189, 394, 415, 1220, 1250
SchI GAGTC 4 cut(s) 164, 268, 936, 1098
ScrFI CCNGG 7 cut(s) 241, 248, 361, 398, 617, 1034, 1035
SduI GDGCHC 1 cut(s) 297
SexAI ACCWGGT 2 cut(s) 246, 396
SfaNI GCATC 4 cut(s) 168, 250, 1182, 1317
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 3 cut(s) 189, 394, 1220
SmaI CCCGGG 1 cut(s) 1035
SmiMI CAYNNNNRTG 1 cut(s) 929
SmlI CTYRAG 4 cut(s) 519, 740, 1016, 1159
SmoI CTYRAG 4 cut(s) 519, 740, 1016, 1159
Sse9I AATT 5 cut(s) 367, 431, 607, 825, 994
SsiI CCGC 2 cut(s) 192, 1164
SspMI CTAG 2 cut(s) 972, 1155
StyD4I CCNGG 7 cut(s) 239, 246, 359, 396, 615, 1032, 1033
StyI CCWWGG 2 cut(s) 148, 1177
TaaI ACNGT 7 cut(s) 198, 310, 382, 768, 893, 1323, 1350
TaiI ACGT 2 cut(s) 183, 695
TasI AATT 5 cut(s) 367, 431, 607, 825, 994
TatI WGTACW 1 cut(s) 695
TfiI GAWTC 3 cut(s) 558, 813, 1234
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 9 cut(s) 394, 413, 480, 771, 883, 906, 1065, 1328, 1353
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 6 cut(s) 506, 550, 804, 987, 993, 1226
TspGWI ACGGA 1 cut(s) 600
TspMI CCCGGG 1 cut(s) 1033
TspRI CASTG 9 cut(s) 394, 413, 480, 771, 883, 906, 1065, 1328, 1353
Tth111I GACNNNGTC 1 cut(s) 766
VpaK11BI GGWCC 3 cut(s) 189, 394, 1220
XapI RAATTY 1 cut(s) 994
XceI RCATGY 2 cut(s) 335, 702
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XmaI CCCGGG 1 cut(s) 1033
XmiI GTMKAC 1 cut(s) 1137
XspI CTAG 2 cut(s) 972, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.