Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000173.1

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Forward (+)

34429 .. 38039

Gene Structure 3611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000173.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ctgggatcggaggttggtgctgctgcagttcgacgtgctggtgcagagggggtgctggtgcgttggagggaggctgcaggtgcttgggctcgggcagttgtgcagcagggaggtgcggcagggtggcaggaaacagcgggggctgctgtgcagtgcggtgtctcagaacccatccatactcactccattgttccaaacttcacagccacctatcttgaattcattgagaattctggtgctttcttggcctccagtaatggcactttcaaagcctttatcactaaagaaagtttgtatagaggttcctacttctctgtcatccacacagcctctaacattaccatctggcagggcaacgaaaaaatacccatttcaccttctgcaaaggttttactaaccatccatggccttagcatcaccaatgactcaaacaacgttgtatggtccacaccgttattgaactctctggttactgctctccagcttttagaaaccggaaacctggtcttagttgatgctcaaaatgtgaccctctgggagagttttgagcaccctacagatacagttgtcatgggtcaaagattgcatgttggtaaatctctgcttacacgcagggaccatgccaagggtgattatagtcttgcagttaccagtgaggatctggtgcttcagtggaagggccagacttattcgaaattatccatgggcacaaatgctatcaagtatgcaagtgtgccagtgtcctttatgacaacgaatggaactggtttgtatctgcttgggaataatggctcagaagtagtgtttcattttctgttggaactctcagatatgagctttgccaaattggaatctagtgggatattatacatatcgaatatctttgagcgtatttggttttccgacattgataatggtggctttagtactgtatataaaggtaccataccagacagcaatgcagtggccgtgaaaaagattacaagtttgggagtccgagggaaggagtcttttactgagactgcaacaatgggaagcatctaccacatcaatctggttagtttgagaggtttctgcatccaaggaagccagtgttttctagtttatgagtatatgaatagaggttcattggagaaggttctgtttggcaatggccctgttttggattgggaaaagagatatgggatagtgcttggaatggcaagggggcttgcttacttgcacagtggatgcaatcccaagatagtccactgtgacatcaaaccggaaaaacatacttctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop

Protein Analysis

428

Amino Acids

46.46

Weight (kDa)

6.94

Isoelectric Point (pI)

22.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	941
AccB1I	GGYRCC	1 cut(s)	941
AciI	CCGC	3 cut(s)	116, 137, 156
AclI	AACGTT	1 cut(s)	435
AclWI	GGATC	2 cut(s)	13, 666
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	2 cut(s)	218, 229
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	2 cut(s)	928, 943
AfiI	CCNNNNNNNGG	3 cut(s)	625, 1003, 1162
AgsI	TTSAA	3 cut(s)	218, 268, 460
AjiI	CACGTC	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	484, 837
AluI	AGCT	2 cut(s)	484, 837
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	2 cut(s)	166, 1013
AlwI	GGATC	2 cut(s)	13, 666
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	5 cut(s)	246, 406, 679, 966, 1153
ApeKI	GCWGC	5 cut(s)	20, 23, 74, 103, 143
ApoI	RAATTY	2 cut(s)	218, 229
Asp718I	GGTACC	1 cut(s)	941
AspS9I	GGNCC	4 cut(s)	444, 616, 679, 1154
AsuHPI	GGTGA	3 cut(s)	366, 409, 641
AsuII	TTCGAA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	2 cut(s)	444, 616
BaeGI	GKGCMC	1 cut(s)	710
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BanI	GGYRCC	1 cut(s)	941
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	5 cut(s)	7, 10, 61, 115, 130
BccI	CCATC	3 cut(s)	179, 350, 407
BceAI	ACGGC	1 cut(s)	953
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	166, 1013
BfaI	CTAG	2 cut(s)	855, 1100
BfmI	CTRYAG	3 cut(s)	24, 75, 555
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	6 cut(s)	21, 24, 75, 104, 117, 144
BlsI	GCNGC	6 cut(s)	22, 25, 76, 105, 118, 145
BmcAI	AGTACT	1 cut(s)	928
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	2 cut(s)	444, 616
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	4 cut(s)	444, 616, 679, 1154
BmiI	GGNNCC	3 cut(s)	304, 617, 943
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	5 cut(s)	423, 505, 1047, 1086, 1220
BpmI	CTGGAG	2 cut(s)	235, 464
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu14I	TTCGAA	1 cut(s)	692
BsaJI	CCNNGG	5 cut(s)	403, 624, 702, 997, 1081
BsaWI	WCCGGW	2 cut(s)	494, 1264
Bsc4I	CCNNNNNNNGG	3 cut(s)	625, 1003, 1162
Bse1I	ACTGG	5 cut(s)	252, 651, 737, 769, 1090
Bse3DI	GCAATG	2 cut(s)	964, 1156
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	5 cut(s)	403, 624, 702, 997, 1081
BseGI	GGATG	5 cut(s)	171, 318, 399, 1077, 1235
BseLI	CCNNNNNNNGG	3 cut(s)	625, 1003, 1162
BseMI	GCAATG	2 cut(s)	964, 1156
BseMII	CTCAG	4 cut(s)	177, 807, 840, 1008
BseNI	ACTGG	5 cut(s)	252, 651, 737, 769, 1090
BseSI	GKGCMC	1 cut(s)	710
BseXI	GCAGC	5 cut(s)	7, 10, 61, 115, 130
BsgI	GTGCAG	3 cut(s)	63, 122, 170
BshFI	GGCC	5 cut(s)	248, 408, 681, 968, 1155
BshNI	GGYRCC	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	495, 1265
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	3 cut(s)	625, 1003, 1162
BsmAI	GTCTC	2 cut(s)	166, 1013
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	5 cut(s)	248, 408, 681, 968, 1155
BsoBI	CYCGRG	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	692
Bsp1286I	GDGCHC	3 cut(s)	91, 552, 710
Bsp143I	GATC	2 cut(s)	5, 658
Bsp19I	CCATGG	2 cut(s)	403, 702
BspACI	CCGC	3 cut(s)	116, 137, 156
BspANI	GGCC	5 cut(s)	248, 408, 681, 968, 1155
BspCNI	CTCAG	4 cut(s)	176, 806, 839, 1009
BspLI	GGNNCC	3 cut(s)	304, 617, 943
BspMAI	CTGCAG	2 cut(s)	28, 79
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	13, 666
BspT104I	TTCGAA	1 cut(s)	692
BspT107I	GGYRCC	1 cut(s)	941
BsrDI	GCAATG	2 cut(s)	964, 1156
BsrI	ACTGG	5 cut(s)	252, 651, 737, 769, 1090
BssECI	CCNNGG	5 cut(s)	403, 624, 702, 997, 1081
BssMI	GATC	2 cut(s)	5, 658
BssT1I	CCWWGG	4 cut(s)	403, 624, 702, 1081
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	5 cut(s)	453, 565, 931, 1226, 1253
BstBI	TTCGAA	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	1212
BstDEI	CTNAG	6 cut(s)	163, 410, 508, 793, 826, 1017
BstDSI	CCRYGG	2 cut(s)	403, 702
BstF5I	GGATG	5 cut(s)	171, 318, 399, 1077, 1235
BstKTI	GATC	2 cut(s)	8, 661
BstMAI	GTCTC	2 cut(s)	166, 1013
BstMBI	GATC	2 cut(s)	5, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 143, 245
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	3 cut(s)	24, 75, 555
BstSLI	GKGCMC	1 cut(s)	710
BstV1I	GCAGC	5 cut(s)	7, 10, 61, 115, 130
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	5 cut(s)	248, 408, 681, 968, 1155
BtgI	CCRYGG	2 cut(s)	403, 702
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	5 cut(s)	171, 318, 399, 1077, 1235
BtsI	GCAGTG	2 cut(s)	158, 969
BtsIMutI	CAGTG	8 cut(s)	158, 658, 677, 744, 969, 1097, 1231, 1249
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	1212
Cfr13I	GGNCC	4 cut(s)	444, 616, 679, 1154
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	927, 942
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	6 cut(s)	404, 571, 587, 620, 703, 1284
CviQI	GTAC	2 cut(s)	927, 942
DdeI	CTNAG	6 cut(s)	163, 410, 508, 793, 826, 1017
DpnI	GATC	2 cut(s)	7, 660
DpnII	GATC	2 cut(s)	5, 658
EaeI	YGGCCR	1 cut(s)	966
Eco130I	CCWWGG	4 cut(s)	403, 624, 702, 1081
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	444, 616
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	90
EcoRI	GAATTC	2 cut(s)	218, 229
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	4 cut(s)	403, 624, 702, 1081
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	4 cut(s)	403, 624, 702, 1081
FaeI	CATG	6 cut(s)	407, 574, 590, 623, 706, 1287
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	6 cut(s)	403, 570, 586, 619, 702, 1283
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	6 cut(s)	21, 24, 75, 104, 117, 144
FokI	GGATG	5 cut(s)	158, 305, 386, 1064, 1242
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	6 cut(s)	21, 24, 75, 104, 117, 144
FspBI	CTAG	2 cut(s)	855, 1100
GluI	GCNGC	6 cut(s)	21, 24, 75, 104, 117, 144
GsuI	CTGGAG	2 cut(s)	235, 464
HaeIII	GGCC	5 cut(s)	248, 408, 681, 968, 1155
HapII	CCGG	2 cut(s)	495, 1265
Hin1II	CATG	6 cut(s)	407, 574, 590, 623, 706, 1287
HinfI	GANTC	4 cut(s)	425, 851, 993, 1007
HpaII	CCGG	2 cut(s)	495, 1265
HphI	GGTGA	3 cut(s)	366, 409, 641
Hpy166II	GTNNAC	2 cut(s)	447, 1249
Hpy188I	TCNGA	6 cut(s)	10, 166, 796, 829, 904, 998
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	447, 1249
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	4 cut(s)	387, 670, 997, 1129
HpyCH4III	ACNGT	5 cut(s)	453, 565, 931, 1226, 1253
HpyCH4IV	ACGT	2 cut(s)	34, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 143, 245
HpyF3I	CTNAG	6 cut(s)	163, 410, 508, 793, 826, 1017
HpySE526I	ACGT	2 cut(s)	34, 435
Hsp92II	CATG	6 cut(s)	407, 574, 590, 623, 706, 1287
KpnI	GGTACC	1 cut(s)	945
Kzo9I	GATC	2 cut(s)	5, 658
Lsp1109I	GCAGC	5 cut(s)	7, 10, 61, 115, 130
LweI	GCATC	5 cut(s)	423, 505, 1047, 1086, 1220
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	2 cut(s)	855, 1100
MaeII	ACGT	2 cut(s)	34, 435
MaeIII	GTNAC	4 cut(s)	469, 526, 646, 1253
MalI	GATC	2 cut(s)	7, 660
MboI	GATC	2 cut(s)	5, 658
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	3 cut(s)	91, 552, 710
MluCI	AATT	4 cut(s)	218, 229, 695, 845
MlyI	GAGTC	3 cut(s)	419, 1002, 1016
MmeI	TCCRAC	3 cut(s)	44, 798, 927
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	495, 1265
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	80, 143, 245
NcoI	CCATGG	2 cut(s)	403, 702
NdeII	GATC	2 cut(s)	5, 658
NlaIII	CATG	6 cut(s)	407, 574, 590, 623, 706, 1287
NlaIV	GGNNCC	3 cut(s)	304, 617, 943
NmuCI	GTSAC	2 cut(s)	526, 1253
NspI	RCATGY	1 cut(s)	590
NspV	TTCGAA	1 cut(s)	692
PaqCI	CACCTGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	851
PkrI	GCNGC	6 cut(s)	22, 25, 76, 105, 118, 145
PleI	GAGTC	3 cut(s)	419, 1001, 1015
PpsI	GAGTC	3 cut(s)	419, 1001, 1015
Psp1406I	AACGTT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	304, 617, 943
PspPI	GGNCC	4 cut(s)	444, 616, 679, 1154
PstI	CTGCAG	2 cut(s)	28, 79
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	2 cut(s)	928, 943
RsaNI	GTAC	2 cut(s)	927, 942
SatI	GCNGC	6 cut(s)	21, 24, 75, 104, 117, 144
Sau3AI	GATC	2 cut(s)	5, 658
Sau96I	GGNCC	4 cut(s)	444, 616, 679, 1154
ScaI	AGTACT	1 cut(s)	928
SchI	GAGTC	3 cut(s)	419, 1002, 1016
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	3 cut(s)	91, 552, 710
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	5 cut(s)	423, 505, 1047, 1086, 1220
SfcI	CTRYAG	3 cut(s)	24, 75, 555
SfuI	TTCGAA	1 cut(s)	692
SinI	GGWCC	2 cut(s)	444, 616
Sse9I	AATT	4 cut(s)	218, 229, 695, 845
SsiI	CCGC	3 cut(s)	116, 137, 156
SspMI	CTAG	2 cut(s)	855, 1100
StyD4I	CCNGG	1 cut(s)	501
StyI	CCWWGG	4 cut(s)	403, 624, 702, 1081
TaaI	ACNGT	5 cut(s)	453, 565, 931, 1226, 1253
TaiI	ACGT	2 cut(s)	37, 438
TaqI	TCGA	3 cut(s)	31, 692, 875
TasI	AATT	4 cut(s)	218, 229, 695, 845
TatI	WGTACW	1 cut(s)	926
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	851
TscAI	CASTG	8 cut(s)	158, 658, 677, 744, 969, 1097, 1231, 1256
TseFI	GTSAC	2 cut(s)	526, 1253
TseI	GCWGC	5 cut(s)	20, 23, 74, 103, 143
Tsp45I	GTSAC	2 cut(s)	526, 1253
TspDTI	ATGAA	4 cut(s)	211, 797, 1116, 1130
TspRI	CASTG	8 cut(s)	158, 658, 677, 744, 969, 1097, 1231, 1256
VpaK11BI	GGWCC	2 cut(s)	444, 616
XapI	RAATTY	2 cut(s)	218, 229
XceI	RCATGY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XspI	CTAG	2 cut(s)	855, 1100
ZrmI	AGTACT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.