Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

10545517 .. 10546720

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCACTTTCAAAGCCTTTGTCACTAAAGAAAGTTTGTATAGAGGTTACTGCTCTCCAGCTTTTAGAAACTGGGAACCTGGTCTTAGTTGATGCTCAAAATGTGACTCTCTGGGAGAGTTTTGAGCACCCTACAGATACAGTTGTCAGGGGTCAAAGATTGCATGTTGGTAAATCTCTGCTTACATATGCCAAGGGTGATTATAGTCTTACAGTTACCAGCGAGGACCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCATAGGGACACATGAGATCAAGTACGCAAGTGTGCCAGTGTCCTTTATGATAATGCATGGAATTGGTTTGTATCTGCTTGGGAATAATGGCTCAGAAAAGCTTGTGGAAAAAATGGGATTATGCACCAATCAGACGTGTACATGTCCAACTGGTTTCTCCCATGTTGATCCTGAGAGAGACCTTGAGTGTGTGCAACTGAAAGAGACACTGTCTTTGCCTTCTGCTTGTAATGAAAGTGGGGATGGTGCCAATGGATTCAAGTCCTCAATTGTTTCTTTGAAGCTGGACAAAGGACAACAGTATTCCAGTGTTAGATTTGGTTATGATAATGACTATGCTGTTAATCATCATAGTGGTCATGAGACTCATGGTGGAGAAAGAAAAAGCGTACTAGAGCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop Transgly

Protein Analysis

225

Amino Acids

24.66

Weight (kDa)

5.97

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	16 - 58	6.1e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	3 cut(s)	293, 409, 660
AflIII	ACRYGT	2 cut(s)	404, 410
AgsI	TTSAA	3 cut(s)	12, 529, 550
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	2 cut(s)	78, 228
AluBI	AGCT	3 cut(s)	61, 370, 553
AluI	AGCT	3 cut(s)	61, 370, 553
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	3 cut(s)	441, 467, 626
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	3 cut(s)	37, 466, 498
AspS9I	GGNCC	2 cut(s)	226, 247
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BanI	GGYRCC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	1 cut(s)	506
BciT130I	CCWGG	2 cut(s)	80, 230
BcoDI	GTCTC	3 cut(s)	441, 467, 626
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	80, 230
Bme18I	GGWCC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	2 cut(s)	226, 247
BmiI	GGNNCC	2 cut(s)	77, 517
BmrFI	CCNGG	2 cut(s)	80, 230
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	192
Bse1I	ACTGG	4 cut(s)	76, 305, 424, 576
BseBI	CCWGG	2 cut(s)	80, 230
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	375, 432
BseNI	ACTGG	4 cut(s)	76, 305, 424, 576
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	441, 467, 626
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	285, 436
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	374, 433
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	77, 517
BspPI	GGATC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	441
BsrGI	TGTACA	1 cut(s)	407
BsrI	ACTGG	4 cut(s)	76, 305, 424, 576
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	285, 436
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	80, 230
Bst4CI	ACNGT	4 cut(s)	142, 214, 480, 570
BstAUI	TGTACA	1 cut(s)	407
BstDEI	CTNAG	3 cut(s)	85, 361, 441
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	2 cut(s)	288, 439
BstMAI	GTCTC	3 cut(s)	441, 467, 626
BstMBI	GATC	2 cut(s)	285, 436
BstNI	CCWGG	2 cut(s)	80, 230
BstNSI	RCATGY	2 cut(s)	167, 414
BstSCI	CCNGG	2 cut(s)	78, 228
BstSFI	CTRYAG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	4 cut(s)	245, 312, 476, 583
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	226, 247
CsiI	ACCWGGT	2 cut(s)	78, 228
Csp6I	GTAC	3 cut(s)	292, 408, 659
CviAII	CATG	7 cut(s)	164, 281, 326, 411, 431, 629, 638
CviJI	RGCY	6 cut(s)	16, 61, 249, 360, 370, 553
CviKI_1	RGCY	6 cut(s)	16, 61, 249, 360, 370, 553
CviQI	GTAC	3 cut(s)	292, 408, 659
DdeI	CTNAG	3 cut(s)	85, 361, 441
DpnI	GATC	2 cut(s)	287, 438
DpnII	GATC	2 cut(s)	285, 436
Eco130I	CCWWGG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	78, 228
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	7 cut(s)	167, 284, 329, 414, 434, 632, 641
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	7 cut(s)	163, 280, 325, 410, 430, 628, 637
FauNDI	CATATG	1 cut(s)	187
FokI	GGATG	1 cut(s)	524
FspBI	CTAG	1 cut(s)	662
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	249
Hin1II	CATG	7 cut(s)	167, 284, 329, 414, 434, 632, 641
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	3 cut(s)	106, 525, 634
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	2 cut(s)	364, 402
Hpy188III	TCNNGA	2 cut(s)	440, 629
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	2 cut(s)	238, 498
HpyCH4III	ACNGT	4 cut(s)	142, 214, 480, 570
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	4 cut(s)	163, 325, 393, 463
HpyF3I	CTNAG	3 cut(s)	85, 361, 441
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	7 cut(s)	167, 284, 329, 414, 434, 632, 641
Kzo9I	GATC	2 cut(s)	285, 436
LweI	GCATC	1 cut(s)	82
MabI	ACCWGGT	2 cut(s)	78, 228
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	4 cut(s)	21, 46, 103, 214
MalI	GATC	2 cut(s)	287, 438
MboI	GATC	2 cut(s)	285, 436
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	263, 330, 537
MlyI	GAGTC	2 cut(s)	100, 628
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	3 cut(s)	37, 217, 544
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	80, 230
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	80, 230
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	2 cut(s)	285, 436
NlaIII	CATG	7 cut(s)	167, 284, 329, 414, 434, 632, 641
NlaIV	GGNNCC	2 cut(s)	77, 517
NmuCI	GTSAC	2 cut(s)	21, 103
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	2 cut(s)	167, 414
PagI	TCATGA	1 cut(s)	628
PciI	ACATGT	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	525
PflFI	GACNNNGTC	1 cut(s)	478
PleI	GAGTC	2 cut(s)	100, 628
PpsI	GAGTC	2 cut(s)	100, 628
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	78, 228
PspGI	CCWGG	2 cut(s)	78, 228
PspN4I	GGNNCC	2 cut(s)	77, 517
PspPI	GGNCC	2 cut(s)	226, 247
PspPPI	RGGWCCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	478
RsaI	GTAC	3 cut(s)	293, 409, 660
RsaNI	GTAC	3 cut(s)	292, 408, 659
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	612
Sau3AI	GATC	2 cut(s)	285, 436
Sau96I	GGNCC	2 cut(s)	226, 247
SchI	GAGTC	2 cut(s)	100, 628
ScrFI	CCNGG	2 cut(s)	80, 230
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	8 cut(s)	48, 63, 81, 231, 372, 407, 453, 555
SexAI	ACCWGGT	2 cut(s)	78, 228
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	263, 330, 537
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	2 cut(s)	78, 228
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	4 cut(s)	142, 214, 480, 570
TaiI	ACGT	1 cut(s)	407
TasI	AATT	3 cut(s)	263, 330, 537
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	4 cut(s)	245, 312, 483, 583
TseFI	GTSAC	2 cut(s)	21, 103
Tsp45I	GTSAC	2 cut(s)	21, 103
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	4 cut(s)	245, 312, 483, 583
Tth111I	GACNNNGTC	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	226
XceI	RCATGY	2 cut(s)	167, 414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	662
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.