Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

50663417 .. 50669159

Gene Structure 5743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTCAAAGATTGCATGTTGGTAAATCTCTGCTTACACGCAGGGACCATGCCAAGGGTGATTATAGTCTTGCAGTTACCAGTGAGGATCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCATGGGCACAAATGCTATCAAGTATGCAAGTGTGCCAGTGTCCTTTATGACAATGAATGGAACTGGTTTGTATGTGCTTGGGAATAATGGCTCAGAAGTAGTGTTTCAATTTCTGTTGGAACTCTCAGATATGAGCTTTGCCAAATTGGACTCTAGTGGGATATTATACATATCGAATATCTTTGAGCGTATTTGGTTTTCCGATATTGATAAGTGCCAATATCCAGAAGCTTGTGGGAAAATGGGATTATGCACAAATCAGACGTGTACATATATGTCCAACTGGTTTCTCCCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

143

Amino Acids

16.13

Weight (kDa)

6.7

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	396
AluBI	AGCT	2 cut(s)	267, 362
AluI	AGCT	2 cut(s)	267, 362
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	46, 109
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	46, 109
BmiI	GGNNCC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	54, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	4 cut(s)	81, 167, 199, 419
BseDI	CCNNGG	2 cut(s)	54, 132
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	237, 270
BseNI	ACTGG	4 cut(s)	81, 167, 199, 419
BseSI	GKGCMC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	236, 269
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	398
BsrI	ACTGG	4 cut(s)	81, 167, 199, 419
BssECI	CCNNGG	2 cut(s)	54, 132
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	54, 132
BstAUI	TGTACA	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	223, 256
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	396
BtsIMutI	CAGTG	3 cut(s)	88, 107, 174
Cfr13I	GGNCC	2 cut(s)	46, 109
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	4 cut(s)	17, 50, 133, 426
CviJI	RGCY	4 cut(s)	111, 222, 267, 362
CviKI_1	RGCY	4 cut(s)	111, 222, 267, 362
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	2 cut(s)	223, 256
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	54, 132
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	54, 132
ErhI	CCWWGG	2 cut(s)	54, 132
FaeI	CATG	4 cut(s)	20, 53, 136, 429
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	16, 49, 132, 425
FspBI	CTAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	20, 53, 136, 429
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	226, 259, 334, 393
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	16, 74, 158, 384
HpyF3I	CTNAG	2 cut(s)	223, 256
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	4 cut(s)	20, 53, 136, 429
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	28, 77, 94, 125, 180, 180, 369, 400
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	3 cut(s)	125, 239, 275
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	4 cut(s)	20, 53, 136, 429
NlaIV	GGNNCC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	20
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	46, 109
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	46, 109
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	3 cut(s)	269, 364, 398
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	125, 239, 275
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	54, 132
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	125, 239, 275
TatI	WGTACW	1 cut(s)	398
TscAI	CASTG	3 cut(s)	88, 107, 174
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	88, 107, 174
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.