Rroxscaffold_3G00232070

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
17624511 .. 17624810
300 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00232070.1

Sequence Viewer

Length: 300 bp
ATGGAAATGAACAGTACTGGTTTGCATTTGGTTGGGGATGATGGCTTGGAGGTTGTTGTTCAAGTTCTTTTGGTACCCTCAGATACAAAGATTGCCAAGTTGGGAAATGAAAGGGTTTTCAGAATCAACAACATGGATGTCAACAATATGGAGGCGGATTTTGCAATGCCAGTAGATACTTGCCAAGTTCCATTCACATGTGGAAAAATGGGATTATGCAGGAATCAGACGTGTACATGCCCTTCATGTTTCTCCTATAAGGATGCTGATCAGAAAAACAATGGTTGTGTGCCAGAATAA

Protein Analysis

99

Amino Acids

10.86

Weight (kDa)

4.66

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 1 cut(s) 155
AfaI GTAC 3 cut(s) 16, 75, 235
AflIII ACRYGT 2 cut(s) 197, 230
AgsI TTSAA 1 cut(s) 62
AjiI CACGTC 1 cut(s) 231
Asp718I GGTACC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BccI CCATC 1 cut(s) 35
BclI TGATCA 1 cut(s) 268
BmcAI AGTACT 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 22, 170
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 3 cut(s) 43, 142, 268
BseJI GATNNNNATC 1 cut(s) 267
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 22, 170
BshNI GGYRCC 1 cut(s) 73
Bsp1407I TGTACA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 171
BsrGI TGTACA 1 cut(s) 233
BsrI ACTGG 2 cut(s) 22, 170
BssMI GATC 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 3 cut(s) 43, 142, 268
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 2 cut(s) 201, 240
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 3 cut(s) 43, 142, 268
Csp6I GTAC 3 cut(s) 15, 74, 234
CviAII CATG 4 cut(s) 133, 198, 237, 246
CviJI RGCY 1 cut(s) 45
CviKI_1 RGCY 1 cut(s) 45
CviQI GTAC 3 cut(s) 15, 74, 234
DdeI CTNAG 1 cut(s) 79
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EciI GGCGGA 1 cut(s) 170
FaeI CATG 4 cut(s) 136, 201, 240, 249
FaiI YATR 7 cut(s) 134, 149, 199, 217, 238, 247, 258
FatI CATG 4 cut(s) 132, 197, 236, 245
FbaI TGATCA 1 cut(s) 268
FokI GGATG 3 cut(s) 50, 149, 275
Hin1II CATG 4 cut(s) 136, 201, 240, 249
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 123, 223
Hpy166II GTNNAC 2 cut(s) 142, 234
Hpy188I TCNGA 4 cut(s) 82, 122, 228, 273
Hpy8I GTNNAC 2 cut(s) 142, 234
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 3 cut(s) 25, 164, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 4 cut(s) 136, 201, 240, 249
KpnI GGTACC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 3 cut(s) 3, 183, 205
LweI GCATC 1 cut(s) 253
MaeII ACGT 1 cut(s) 230
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MnlI CCTC 3 cut(s) 43, 88, 145
MslI CAYNNNNRTG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 268
NlaIII CATG 4 cut(s) 136, 201, 240, 249
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 2 cut(s) 201, 240
PciI ACATGT 1 cut(s) 197
PfeI GAWTC 2 cut(s) 123, 223
PscI ACATGT 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 75
RsaI GTAC 3 cut(s) 16, 75, 235
RsaNI GTAC 3 cut(s) 15, 74, 234
RseI CAYNNNNRTG 1 cut(s) 196
Sau3AI GATC 1 cut(s) 268
ScaI AGTACT 1 cut(s) 16
SetI ASST 2 cut(s) 54, 233
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 196
SsiI CCGC 1 cut(s) 155
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 233
TatI WGTACW 2 cut(s) 14, 233
TfiI GAWTC 2 cut(s) 123, 223
TspDTI ATGAA 3 cut(s) 23, 123, 234
XceI RCATGY 2 cut(s) 201, 240
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.