Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Reverse (-)

48061718 .. 48063949

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATCAAAGATTGCATGTTGGTAAATCTCTGCTTACACGCAGGGACCATGCCAAGGGTGATTATAGTCTTGCAGTTACCATTGAGGATCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCATGGGCACAAATGCTATCAAGTATGCAAGTGTGCCAGTGTCCTTTATGACAATGAATGGAACTGGTTTGTATCTGCTTGGGAATAATGGCTCAGAAGTAGTGTTTCATTTTCTGTTGGAACTCTCAGATATGAGCTTTGCCAAATTGGACTCTAGTGGGATATTATACATATCGAATATCTTTGAGCGTATTTGGTTTTCCGACATTGATAAGTGCCAATATCCAGAAGCTTGTGGGAAAATGGGATTATGCACAAATCAGACGCGTACATGTCCAACTGGTTTCTCCCATGTTGATTCTGAGAAAGACCTTGAGTGTGTGCAACTGAAAGAGTCGACATTGTCTTTGCCTTCTGCTTGTAATGAAAGTGGGGATGGTACCAATGGATTCAAGTCCTCAATTGTTTATTTGAAGCTGGATAAAGGGAACAAAACAAGAGAACAACAGCCTGACAAATGGTTTGGTCCGATTCGGTTGCCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

6.42

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	1 cut(s)	397
AclWI	GGATC	2 cut(s)	12, 96
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	400, 511
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	2 cut(s)	395, 401
AgsI	TTSAA	2 cut(s)	523, 544
AluBI	AGCT	3 cut(s)	267, 362, 547
AluI	AGCT	3 cut(s)	267, 362, 547
AlwI	GGATC	2 cut(s)	12, 96
AoxI	GGCC	1 cut(s)	109
ArsI	GACNNNNNNTTYG	4 cut(s)	460, 492, 575, 607
Asp718I	GGTACC	1 cut(s)	509
AspS9I	GGNCC	3 cut(s)	46, 109, 596
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	46, 596
BaeGI	GKGCMC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	509
BccI	CCATC	1 cut(s)	500
BcgI	CGANNNNNNTGC	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	612
BfaI	CTAG	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	2 cut(s)	46, 596
BmgT120I	GGNCC	3 cut(s)	46, 109, 596
BmiI	GGNNCC	2 cut(s)	47, 511
BmrFI	CCNGG	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	54, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	3 cut(s)	167, 199, 415
BseDI	CCNNGG	2 cut(s)	54, 132
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	237, 270, 423
BseNI	ACTGG	3 cut(s)	167, 199, 415
BseSI	GKGCMC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	4, 88
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	236, 269, 424
BspFNI	CGCG	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	47, 511
BspPI	GGATC	2 cut(s)	12, 96
BspT107I	GGYRCC	1 cut(s)	509
BsrI	ACTGG	3 cut(s)	167, 199, 415
BssECI	CCNNGG	2 cut(s)	54, 132
BssMI	GATC	2 cut(s)	4, 88
BssT1I	CCWWGG	2 cut(s)	54, 132
BstDEI	CTNAG	3 cut(s)	223, 256, 432
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	397
BstKTI	GATC	2 cut(s)	7, 91
BstMBI	GATC	2 cut(s)	4, 88
BstNSI	RCATGY	2 cut(s)	20, 405
BstSCI	CCNGG	1 cut(s)	610
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	107, 174
Cfr13I	GGNCC	3 cut(s)	46, 109, 596
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	399, 510
CviAII	CATG	5 cut(s)	17, 50, 133, 402, 422
CviJI	RGCY	6 cut(s)	111, 222, 267, 362, 547, 580
CviKI_1	RGCY	6 cut(s)	111, 222, 267, 362, 547, 580
CviQI	GTAC	2 cut(s)	399, 510
DdeI	CTNAG	3 cut(s)	223, 256, 432
DpnI	GATC	2 cut(s)	6, 90
DpnII	GATC	2 cut(s)	4, 88
Eco130I	CCWWGG	2 cut(s)	54, 132
Eco47I	GGWCC	2 cut(s)	46, 596
Eco57I	CTGAAG	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	54, 132
ErhI	CCWWGG	2 cut(s)	54, 132
FaeI	CATG	5 cut(s)	20, 53, 136, 405, 425
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	16, 49, 132, 401, 421
FblI	GTMKAC	1 cut(s)	467
FokI	GGATG	1 cut(s)	518
FspBI	CTAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	612
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	5 cut(s)	20, 53, 136, 405, 425
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	5 cut(s)	281, 428, 464, 519, 601
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	6 cut(s)	226, 259, 334, 393, 433, 600
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	468
HpyAV	CCTTC	2 cut(s)	100, 492
HpyCH4V	TGCA	5 cut(s)	16, 74, 158, 384, 454
HpyF3I	CTNAG	3 cut(s)	223, 256, 432
Hsp92II	CATG	5 cut(s)	20, 53, 136, 405, 425
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	4, 88
LpnPI	CCDG	9 cut(s)	28, 77, 125, 180, 180, 369, 396, 533, 594
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	6, 90
MboI	GATC	2 cut(s)	4, 88
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	3 cut(s)	125, 275, 531
MluI	ACGCGT	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	275, 473
MmeI	TCCRAC	3 cut(s)	228, 357, 431
MnlI	CCTC	2 cut(s)	79, 538
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	397
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	4, 88
NlaIII	CATG	5 cut(s)	20, 53, 136, 405, 425
NlaIV	GGNNCC	2 cut(s)	47, 511
NspI	RCATGY	2 cut(s)	20, 405
PciI	ACATGT	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	428, 519, 601
PflFI	GACNNNGTC	1 cut(s)	472
PleI	GAGTC	2 cut(s)	275, 472
PpsI	GAGTC	2 cut(s)	275, 472
PscI	ACATGT	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	47, 511
PspPI	GGNCC	3 cut(s)	46, 109, 596
PsuI	RGATCY	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	472
RsaI	GTAC	2 cut(s)	400, 511
RsaNI	GTAC	2 cut(s)	399, 510
SalI	GTCGAC	1 cut(s)	466
Sau3AI	GATC	2 cut(s)	4, 88
Sau96I	GGNCC	3 cut(s)	46, 109, 596
SchI	GAGTC	2 cut(s)	275, 473
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	4 cut(s)	269, 364, 444, 549
SinI	GGWCC	2 cut(s)	46, 596
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	125, 275, 531
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	2 cut(s)	54, 132
TaqI	TCGA	2 cut(s)	305, 467
TasI	AATT	3 cut(s)	125, 275, 531
TfiI	GAWTC	3 cut(s)	428, 519, 601
TscAI	CASTG	2 cut(s)	107, 174
TspDTI	ATGAA	3 cut(s)	200, 227, 510
TspRI	CASTG	2 cut(s)	107, 174
Tth111I	GACNNNGTC	1 cut(s)	472
VpaK11BI	GGWCC	2 cut(s)	46, 596
XceI	RCATGY	2 cut(s)	20, 405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.