RLG00000001654

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001098
Physical Location & Seq
Forward (+)
18830836 .. 18832425
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001654

Sequence Viewer

Length: 1398 bp
ATGGGTTCGTGGAGTACATGTCCAACTGGTTTCTCCCATGTTGATCCTGAGAAAGACCTTGAGTGTGTGCAACTGAAAGAGACACTGTCTTTGCCTTCTGCTTGTAATGAAAGTGGGGATGGTACCAATGGATTCAAGTCCTCAATTGTTTATTTGAAGCTGGACAAAGGTATGGACTATTTTGCAAATCAGTTCACTGAACCTGTGAAACTTGGTGCAAGTTTATCACTATGTCAATCTCCATGCTCTCAAAATTGCACTTGCTTGGCCTTTTTCCATGGAAAATCTTCTGGTTCTTGTTATCTAGTTGAAAACAATTTGGGTTTCATCATATACAGCTCTAGCAGCCAGGAAGATCGAATAAGTGGTCATGAGACTCATATGGTGGAGAAGAAAAAGCGTACTAGAGCAAGTGTAGATGTATGGAATTCATCTTCATCATCAGAGCTTGAGATATCCTCTATCCCGGGTACTATACCAGACAACAATGCAGTGGCTGTGAAAAAGATTACAAGTTTGGGAGTCCGAGGGAAGGAGTTTTTTACGGAGACTGCCACAATGGGAAGCATCTACCACTTCAATCTGGTTAGCTTGAGCGGTTTCTGCATCCAAGGAAGCCAGTGTTTTCTGGTTTATGAGTATATGAATAGAGGTTCATTGGAGAAGATTCTCTTTGGCAATGGCCCTGTTTTGGATTGGGAAAAAAGATATGGGATAGCGCTTGGAATGGCAAGGGGGCTTGCTTACTTGCACAGTGGATGCAATGCCAAGATAGTCCACTGTGACATCAAACCAGAAAACATACTTCTGCATGATGATTTACGAGTGAAGATATCAGACTTTGGGGTTTCCAAGTTTATAAGTTACAAAAAATCCAAAATGTGGACGACACTTAGAGGAACTCGGGGATATCTTGCTCCGGAATGGCTTACTAGCTATGGCATCAGTGAAAAAATTGATGTATACAGTTATGGGATGGTGTTGCTAGAATTGGAGAGGGGAAGAAGAAATTGCTTGTTTCTAAGTAGTGGCACCGGAAATGATGACACTGATGGAAATGAAAAATGCTTCAATTCAATCAGTTCGGAAGAAAGAATGGTGTACTTCCCACAACTTGCACTCCAAATGCATCAGAAAATGAGGTATATGGAACTAGCTGACCCAAGGTTAGAGGGTCGTGTGAGGAATGAGGAGGTTGAGAAGCTAGTGAGGGTAGCCTTGTGTTGTGTGCATGTAGGGCCAACACTGAGGCCAAGTATGACCAATGTGGTAGCTATGTTGGAAGGCAGATTACCTATAGCTGAGCCTAGGATTGAAGCATTAGAATTCTTGAAGTCCTATGGTGGAAATGTCTCAGAGGCATCCAGCAAGCTAACAAAAGTGGGATGTGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin Pkinase

Protein Analysis

466

Amino Acids

51.59

Weight (kDa)

6.58

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 161 - 425 5.6e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 162 - 424 4.5e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 122, 1031
AccB7I CCANNNNNTGG 1 cut(s) 882
AccBSI CCGCTC 1 cut(s) 597
AccI GTMKAC 1 cut(s) 963
AccIII TCCGGA 1 cut(s) 919
AciI CCGC 1 cut(s) 597
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 2 cut(s) 427, 1325
AfaI GTAC 5 cut(s) 16, 124, 403, 472, 1103
AfeI AGCGCT 1 cut(s) 720
AfiI CCNNNNNNNGG 3 cut(s) 532, 691, 882
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 8 cut(s) 136, 157, 311, 580, 1072, 1077, 1316, 1333
AjnI CCWGG 1 cut(s) 348
Alw26I GTCTC 4 cut(s) 74, 368, 542, 1357
AlwI GGATC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 2 cut(s) 466, 903
Aor13HI TCCGGA 1 cut(s) 919
Aor51HI AGCGCT 1 cut(s) 720
AoxI GGCC 4 cut(s) 267, 682, 1238, 1250
ApeKI GCWGC 1 cut(s) 345
ApoI RAATTY 2 cut(s) 427, 1325
ArsI GACNNNNNNTTYG 4 cut(s) 73, 105, 352, 384
Asp700I GAANNNNTTC 1 cut(s) 286
Asp718I GGTACC 1 cut(s) 122
AspA2I CCTAGG 1 cut(s) 1307
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 683, 1238
AsuC2I CCSGG 2 cut(s) 467, 468
AvaI CYCGRG 2 cut(s) 466, 903
AvrII CCTAGG 1 cut(s) 1307
BanI GGYRCC 2 cut(s) 122, 1031
BarI GAAGNNNNNNTAC 2 cut(s) 1275, 1307
BbvI GCAGC 1 cut(s) 357
BccI CCATC 3 cut(s) 113, 970, 1046
BciT130I CCWGG 1 cut(s) 350
BcnI CCSGG 2 cut(s) 467, 468
BcoDI GTCTC 4 cut(s) 74, 368, 542, 1357
BfaI CTAG 8 cut(s) 305, 342, 405, 933, 986, 1154, 1205, 1308
BfmI CTRYAG 1 cut(s) 1296
BfoI RGCGCY 1 cut(s) 722
BisI GCNGC 1 cut(s) 346
BlnI CCTAGG 1 cut(s) 1307
BlpI GCTNAGC 1 cut(s) 1302
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 3 cut(s) 350, 467, 468
BmeT110I CYCGRG 2 cut(s) 466, 903
BmgT120I GGNCC 2 cut(s) 683, 1238
BmiI GGNNCC 2 cut(s) 124, 1033
BmrFI CCNGG 3 cut(s) 350, 467, 468
BmsI GCATC 6 cut(s) 576, 615, 749, 951, 1138, 1370
BplI GAGNNNNNCTC 2 cut(s) 443, 475
Bpu1102I GCTNAGC 1 cut(s) 1302
BpuEI CTTGAG 3 cut(s) 80, 470, 613
BpuMI CCSGG 2 cut(s) 467, 468
BsaJI CCNNGG 6 cut(s) 277, 466, 526, 610, 1163, 1307
BsaWI WCCGGW 2 cut(s) 919, 1034
BsaXI ACNNNNNCTCC 3 cut(s) 34, 1104, 1134
Bsc4I CCNNNNNNNGG 3 cut(s) 532, 691, 882
Bse1I ACTGG 2 cut(s) 31, 619
Bse3DI GCAATG 2 cut(s) 685, 769
BseAI TCCGGA 1 cut(s) 919
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 6 cut(s) 277, 466, 526, 610, 1163, 1307
BseGI GGATG 6 cut(s) 124, 606, 764, 981, 1361, 1391
BseLI CCNNNNNNNGG 3 cut(s) 532, 691, 882
BseMI GCAATG 2 cut(s) 685, 769
BseMII CTCAG 4 cut(s) 39, 1238, 1293, 1368
BseNI ACTGG 2 cut(s) 31, 619
BseRI GAGGAG 1 cut(s) 1205
BseXI GCAGC 1 cut(s) 357
BshFI GGCC 4 cut(s) 269, 684, 1240, 1252
BshNI GGYRCC 2 cut(s) 122, 1031
BsiHKCI CYCGRG 2 cut(s) 466, 903
BsiSI CCGG 3 cut(s) 467, 920, 1035
BslI CCNNNNNNNGG 3 cut(s) 532, 691, 882
BsmAI GTCTC 4 cut(s) 74, 368, 542, 1357
BsnI GGCC 4 cut(s) 269, 684, 1240, 1252
BsoBI CYCGRG 2 cut(s) 466, 903
Bsp13I TCCGGA 1 cut(s) 919
Bsp143I GATC 2 cut(s) 43, 355
Bsp1720I GCTNAGC 1 cut(s) 1302
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 1 cut(s) 597
BspANI GGCC 4 cut(s) 269, 684, 1240, 1252
BspCNI CTCAG 4 cut(s) 40, 1239, 1294, 1367
BspEI TCCGGA 1 cut(s) 919
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 124, 1033
BspPI GGATC 1 cut(s) 38
BspT107I GGYRCC 2 cut(s) 122, 1031
BsrBI CCGCTC 1 cut(s) 597
BsrDI GCAATG 2 cut(s) 685, 769
BsrI ACTGG 2 cut(s) 31, 619
BssECI CCNNGG 6 cut(s) 277, 466, 526, 610, 1163, 1307
BssMI GATC 2 cut(s) 43, 355
BssNAI GTATAC 1 cut(s) 964
BssT1I CCWWGG 4 cut(s) 277, 610, 1163, 1307
Bst1107I GTATAC 1 cut(s) 964
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 4 cut(s) 87, 755, 782, 968
BstC8I GCNNGC 2 cut(s) 741, 1370
BstDEI CTNAG 6 cut(s) 48, 893, 1022, 1247, 1302, 1354
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 6 cut(s) 124, 606, 764, 981, 1361, 1391
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 2 cut(s) 46, 358
BstMAI GTCTC 4 cut(s) 74, 368, 542, 1357
BstMBI GATC 2 cut(s) 43, 355
BstMWI GCNNNNNNNGC 3 cut(s) 345, 603, 1237
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 2 cut(s) 21, 1235
BstSCI CCNGG 3 cut(s) 348, 465, 466
BstSFI CTRYAG 1 cut(s) 1296
BstV1I GCAGC 1 cut(s) 357
BstZ17I GTATAC 1 cut(s) 964
BsuRI GGCC 4 cut(s) 269, 684, 1240, 1252
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 6 cut(s) 124, 606, 764, 981, 1361, 1391
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 9 cut(s) 83, 195, 498, 626, 760, 778, 952, 1047, 1244
Cac8I GCNNGC 2 cut(s) 741, 1370
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 721
Cfr13I GGNCC 2 cut(s) 683, 1238
Cfr9I CCCGGG 1 cut(s) 466
Csp6I GTAC 5 cut(s) 15, 123, 402, 471, 1102
CviAII CATG 7 cut(s) 18, 38, 243, 278, 371, 812, 1232
CviQI GTAC 5 cut(s) 15, 123, 402, 471, 1102
DdeI CTNAG 6 cut(s) 48, 893, 1022, 1247, 1302, 1354
DpnI GATC 2 cut(s) 45, 357
DpnII GATC 2 cut(s) 43, 355
Eco130I CCWWGG 4 cut(s) 277, 610, 1163, 1307
Eco32I GATATC 3 cut(s) 456, 834, 911
Eco47III AGCGCT 1 cut(s) 720
Eco88I CYCGRG 2 cut(s) 466, 903
EcoRI GAATTC 2 cut(s) 427, 1325
EcoRII CCWGG 1 cut(s) 348
EcoRV GATATC 3 cut(s) 456, 834, 911
EcoT14I CCWWGG 4 cut(s) 277, 610, 1163, 1307
EcoT22I ATGCAT 1 cut(s) 1131
ErhI CCWWGG 4 cut(s) 277, 610, 1163, 1307
FaeI CATG 7 cut(s) 21, 41, 246, 281, 374, 815, 1235
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FatI CATG 7 cut(s) 17, 37, 242, 277, 370, 811, 1231
FauNDI CATATG 1 cut(s) 381
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 5 cut(s) 131, 593, 771, 988, 1348
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 8 cut(s) 305, 342, 405, 933, 986, 1154, 1205, 1308
GlaI GCGC 1 cut(s) 720
GluI GCNGC 1 cut(s) 346
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 4 cut(s) 269, 684, 1240, 1252
HapII CCGG 3 cut(s) 467, 920, 1035
HhaI GCGC 1 cut(s) 721
Hin1II CATG 7 cut(s) 21, 41, 246, 281, 374, 815, 1235
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HinfI GANTC 4 cut(s) 132, 376, 522, 667
HpaII CCGG 3 cut(s) 467, 920, 1035
Hpy166II GTNNAC 5 cut(s) 195, 778, 885, 964, 1102
Hpy188I TCNGA 6 cut(s) 445, 527, 838, 1087, 1134, 1357
Hpy188III TCNNGA 4 cut(s) 47, 371, 920, 1330
Hpy8I GTNNAC 5 cut(s) 195, 778, 885, 964, 1102
HpyAV CCTTC 3 cut(s) 105, 526, 1277
HpyCH4III ACNGT 4 cut(s) 87, 755, 782, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 603, 1237
HpyF3I CTNAG 6 cut(s) 48, 893, 1022, 1247, 1302, 1354
Hsp92II CATG 7 cut(s) 21, 41, 246, 281, 374, 815, 1235
HspAI GCGC 1 cut(s) 719
Kpn2I TCCGGA 1 cut(s) 919
KpnI GGTACC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 43, 355
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 6 cut(s) 576, 615, 749, 951, 1138, 1370
MaeI CTAG 8 cut(s) 305, 342, 405, 933, 986, 1154, 1205, 1308
MaeIII GTNAC 2 cut(s) 782, 863
MalI GATC 2 cut(s) 45, 357
MbiI CCGCTC 1 cut(s) 597
MboI GATC 2 cut(s) 43, 355
MboII GAAGA 9 cut(s) 279, 365, 403, 426, 676, 841, 1014, 1017, 1100
MfeI CAATTG 1 cut(s) 144
MluCI AATT 9 cut(s) 144, 253, 316, 427, 954, 989, 1009, 1072, 1325
MlyI GAGTC 2 cut(s) 370, 531
MmeI TCCRAC 2 cut(s) 47, 1260
Mph1103I ATGCAT 1 cut(s) 1131
MroI TCCGGA 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 286
MspI CCGG 3 cut(s) 467, 920, 1035
MspR9I CCNGG 3 cut(s) 350, 467, 468
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 345, 603, 1237
NciI CCSGG 2 cut(s) 467, 468
NcoI CCATGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 381
NdeII GATC 2 cut(s) 43, 355
NlaIII CATG 7 cut(s) 21, 41, 246, 281, 374, 815, 1235
NlaIV GGNNCC 2 cut(s) 124, 1033
NmuCI GTSAC 1 cut(s) 782
NsiI ATGCAT 1 cut(s) 1131
NspI RCATGY 2 cut(s) 21, 1235
PagI TCATGA 1 cut(s) 370
PciI ACATGT 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 132, 667
PflFI GACNNNGTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 882
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 2 cut(s) 370, 530
PpsI GAGTC 2 cut(s) 370, 530
PscI ACATGT 1 cut(s) 17
PsiI TTATAA 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 124, 1033
PspPI GGNCC 2 cut(s) 683, 1238
PstNI CAGNNNCTG 1 cut(s) 497
PsyI GACNNNGTC 1 cut(s) 85
RsaI GTAC 5 cut(s) 16, 124, 403, 472, 1103
RsaNI GTAC 5 cut(s) 15, 123, 402, 471, 1102
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 2 cut(s) 43, 355
Sau96I GGNCC 2 cut(s) 683, 1238
SchI GAGTC 2 cut(s) 370, 531
ScrFI CCNGG 3 cut(s) 350, 467, 468
SfaNI GCATC 6 cut(s) 576, 615, 749, 951, 1138, 1370
SfcI CTRYAG 1 cut(s) 1296
SmaI CCCGGG 1 cut(s) 468
SmlI CTYRAG 3 cut(s) 59, 449, 592
SmoI CTYRAG 3 cut(s) 59, 449, 592
Sse9I AATT 9 cut(s) 144, 253, 316, 427, 954, 989, 1009, 1072, 1325
SsiI CCGC 1 cut(s) 597
SspMI CTAG 8 cut(s) 305, 342, 405, 933, 986, 1154, 1205, 1308
StyD4I CCNGG 3 cut(s) 348, 465, 466
StyI CCWWGG 4 cut(s) 277, 610, 1163, 1307
TaaI ACNGT 4 cut(s) 87, 755, 782, 968
TaqI TCGA 1 cut(s) 358
TasI AATT 9 cut(s) 144, 253, 316, 427, 954, 989, 1009, 1072, 1325
TatI WGTACW 2 cut(s) 14, 1101
TfiI GAWTC 2 cut(s) 132, 667
TscAI CASTG 9 cut(s) 90, 202, 498, 626, 760, 785, 952, 1054, 1251
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 7 cut(s) 123, 316, 420, 426, 645, 659, 1074
TspGWI ACGGA 1 cut(s) 560
TspMI CCCGGG 1 cut(s) 466
TspRI CASTG 9 cut(s) 90, 202, 498, 626, 760, 785, 952, 1054, 1251
Tth111I GACNNNGTC 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 882
XapI RAATTY 2 cut(s) 427, 1325
XceI RCATGY 2 cut(s) 21, 1235
XmaI CCCGGG 1 cut(s) 466
XmaJI CCTAGG 1 cut(s) 1307
XmiI GTMKAC 1 cut(s) 963
XmnI GAANNNNTTC 1 cut(s) 286
XspI CTAG 8 cut(s) 305, 342, 405, 933, 986, 1154, 1205, 1308
Zsp2I ATGCAT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.