Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001098

Physical Location & Seq

Genomic Coordinates Forward (+)

34492135 .. 34492362

Gene Structure 228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAATAGAGGTTCATTGGAGAAGGTTCTGTTTGGCAATGGCCCTGTTTTGGATTGGGAAAAGAGATATGGGATAGTGCTTGGAATGGCAAGGGGGCTTGCTTACTTGCACAGTGGATGCAATCCTAAGATAGTCCACTGTGACATCAAACCGGAAAACATACTTCTGCATGATGATTTACAAGTGAAGATATCAGACTTTGGGGTTTCCAAGTTTATAAGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

7.81

Isoelectric Point (pI)

16.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 73	1.7e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 73	1.1e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35370
fragaria_vesca	FvH4_2g26490 FvH4_5g31680 FvH4_5g31690
prunus_persica	Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1 Prupe.1G502100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342661 RchiOBHm_Chr6g0295271 RchiOBHm_Chr7g0227271 RchiOBHm_Chr7g0227451 RchiOBHm_Chr7g0227561 RchiOBHm_Chr7g0227571 RchiOBHm_Chr7g0241321
rosa_laevigata	RLG00000001125 RLG00000001126 RLG00000001636 RLG00000001637 RLG00000001645 RLG00000001654 RLG00000011815
rosa_multiflora	Rmu_co8232247.1_g000001 Rmu_sc0000173.1_g000006 Rmu_sc0001772.1_g000015 Rmu_sc0001772.1_g000016 Rmu_sc0007232.1_g000005 Rmu_sc0010768.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441460 Rroxscaffold_3G00232050 Rroxscaffold_3G00232070 Rroxscaffold_3G00232220 Rroxscaffold_7G00172610
rosa_rugosa	Rorug06G0250000 Rorug07G0241600
rosa_samantha	Rh1CG034900 Rh1CG153700 Rh6AG363000 Rh6BG370900 Rh6CG377500 Rh6DG363700 Rh7AG393600 Rh7AG395100 Rh7AG395200 Rh7BG376500 Rh7BG376800 Rh7BG376900 Rh7BG401500 Rh7CG413800 Rh7CG413900 Rh7CG468700 Rh7DG389300 Rh7DG390900 Rh7DG391000
rosa_wichuraiana	Rw1G013700 Rw6G031670 Rw7G032820 Rw7G032860 Rw7G032870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmsI	GCATC	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	113, 140
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	118, 136
Cac8I	GCNNGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	41
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	2 cut(s)	42, 97
CviKI_1	RGCY	2 cut(s)	42, 97
DdeI	CTNAG	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	192
EcoRV	GATATC	1 cut(s)	192
FaeI	CATG	1 cut(s)	173
FaiI	YATR	4 cut(s)	69, 161, 171, 218
FatI	CATG	1 cut(s)	169
FokI	GGATG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	1 cut(s)	173
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	113, 140
HpyCH4V	TGCA	3 cut(s)	109, 120, 169
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	173
LpnPI	CCDG	2 cut(s)	57, 165
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	140, 221
MboII	GAAGA	1 cut(s)	199
MspI	CCGG	1 cut(s)	152
NlaIII	CATG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	41
SetI	ASST	2 cut(s)	13, 27
SfaNI	GCATC	1 cut(s)	107
SgeI	CNNG	9 cut(s)	56, 92, 102, 110, 118, 164, 182, 194, 223
TaaI	ACNGT	2 cut(s)	113, 140
TscAI	CASTG	2 cut(s)	118, 143
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	118, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.