FvH4_6g04803

BONZAI 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002274
Physical Location & Seq
Forward (+)
2653730 .. 2654284
555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04803.t1

Sequence Viewer

Length: 555 bp
ATGGGAAGCTGCTTCTCTGATATGGAAGAAGGGAAGCAAGCCATATACAGGGATGGTTATACATACGACGACGACTTGGGATTGGCCTTTCCAACCCGTTATGGAGACACACAGCTACTGCCATCTGCTCCAGCGCTGTCAATACTTCCTGGAGAAGAAGAAAGAGAAGCGGAGGCACAGAAAGAAGAAGAAGAGCGTCAGATAGCTATGGCGATTATGGTCTCTTTGGAGCCTGAATTACAACAAGGGAGCATCCCACAATTGTCATTTTGGCAGACTGAACCTGCTGCAGATGCATCTAGAAGTTCTACGCCTTCGCGACAAGGTCAAGCAAGAGTTTCACAGTTACTACTGTCATCAGCTCAACAAGCTCAGCCAAACAGTTCCAGTAGCAGACCGGAATGCGAGTATTGTTATGATGCTCCAATCGGAGCAACTTGTGATCCTTGTGGCCATGTAGCTTGCTTCAACTGCTGGGTGAAGATTCAACACTCCGACAACAAGTGTCCTCGTTGTCGAGTAGCGATCGAGAAGATCATCAAGCTTTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 Copine

Protein Analysis

185

Amino Acids

20.37

Weight (kDa)

4.62

Isoelectric Point (pI)

65.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 133 - 178 1.2e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccII CGCG 1 cut(s) 319
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 451
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 469, 488
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 7 cut(s) 9, 115, 206, 362, 371, 461, 544
AluI AGCT 7 cut(s) 9, 115, 206, 362, 371, 461, 544
Alw26I GTCTC 2 cut(s) 99, 226
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 2 cut(s) 84, 451
ApeKI GCWGC 2 cut(s) 9, 287
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 490
BalI TGGCCA 1 cut(s) 453
BbvI GCAGC 1 cut(s) 274
BccI CCATC 2 cut(s) 47, 130
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 99, 226
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 2 cut(s) 10, 288
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 2 cut(s) 11, 289
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 4 cut(s) 261, 283, 305, 409
BpmI CTGGAG 2 cut(s) 114, 171
Bpu1102I GCTNAGC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 58, 252
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 2 cut(s) 86, 453
BsiEI CGRYCG 1 cut(s) 528
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 99, 226
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 2 cut(s) 86, 453
Bso31I GGTCTC 1 cut(s) 226
Bsp143I GATC 3 cut(s) 442, 525, 534
Bsp1720I GCTNAGC 1 cut(s) 372
Bsp68I TCGCGA 1 cut(s) 319
BspACI CCGC 1 cut(s) 170
BspANI GGCC 2 cut(s) 86, 453
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 387
BssMI GATC 3 cut(s) 442, 525, 534
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 345, 354, 383
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 39, 463
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 58, 252
BstFNI CGCG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 445, 528, 537
BstMAI GTCTC 2 cut(s) 99, 226
BstMBI GATC 3 cut(s) 442, 525, 534
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 3 cut(s) 293, 368, 471
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 288
BstUI CGCG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 274
BsuRI GGCC 2 cut(s) 86, 453
BtsCI GGATG 2 cut(s) 58, 252
BtuMI TCGCGA 1 cut(s) 319
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 39, 463
CaiI CAGNNNCTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 136
CseI GACGC 1 cut(s) 185
CviAII CATG 1 cut(s) 455
DdeI CTNAG 1 cut(s) 372
DpnI GATC 3 cut(s) 444, 527, 536
DpnII GATC 3 cut(s) 442, 525, 534
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 226
Eco47III AGCGCT 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 1 cut(s) 458
FatI CATG 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 10, 288
FokI GGATG 2 cut(s) 65, 239
Fsp4HI GCNGC 2 cut(s) 10, 288
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 10, 288
GsaI CCCAGC 1 cut(s) 478
GsuI CTGGAG 2 cut(s) 114, 171
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 2 cut(s) 86, 453
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 458
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 1 cut(s) 484
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 490
Hpy188I TCNGA 4 cut(s) 19, 201, 431, 496
Hpy188III TCNNGA 3 cut(s) 300, 318, 529
Hpy99I CGWCG 2 cut(s) 71, 74
HpyAV CCTTC 2 cut(s) 23, 324
HpyCH4III ACNGT 3 cut(s) 345, 354, 383
HpyCH4V TGCA 2 cut(s) 290, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 368, 471
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 1 cut(s) 458
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 442, 525, 534
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 5 cut(s) 133, 229, 249, 427, 431
LpnPI CCDG 9 cut(s) 34, 135, 144, 162, 246, 297, 400, 411, 460
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 4 cut(s) 261, 283, 305, 409
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 345
MalI GATC 3 cut(s) 444, 527, 536
MboI GATC 3 cut(s) 442, 525, 534
MboII GAAGA 8 cut(s) 38, 167, 170, 197, 200, 203, 493, 544
MfeI CAATTG 1 cut(s) 260
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 2 cut(s) 236, 260
MluNI TGGCCA 1 cut(s) 453
MmeI TCCRAC 2 cut(s) 116, 519
MnlI CCTC 2 cut(s) 166, 519
Mox20I TGGCCA 1 cut(s) 453
Mph1103I ATGCAT 1 cut(s) 298
MscI TGGCCA 1 cut(s) 453
Msp20I TGGCCA 1 cut(s) 453
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 293, 368, 471
NdeII GATC 3 cut(s) 442, 525, 534
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 1 cut(s) 231
NruI TCGCGA 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 484
PflFI GACNNNGTC 1 cut(s) 324
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 2 cut(s) 11, 289
Ple19I CGATCG 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 474
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 231
PstI CTGCAG 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 324
PvuI CGATCG 1 cut(s) 528
RruI TCGCGA 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 186
SatI GCNGC 2 cut(s) 10, 288
Sau3AI GATC 3 cut(s) 442, 525, 534
ScrFI CCNGG 1 cut(s) 150
SetI ASST 9 cut(s) 11, 117, 208, 286, 328, 364, 373, 463, 546
SfaNI GCATC 4 cut(s) 261, 283, 305, 409
SfcI CTRYAG 1 cut(s) 288
Sse9I AATT 2 cut(s) 236, 260
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 345, 354, 383
TaqI TCGA 2 cut(s) 517, 528
TasI AATT 2 cut(s) 236, 260
TfiI GAWTC 1 cut(s) 484
TseI GCWGC 2 cut(s) 9, 287
Tth111I GACNNNGTC 1 cut(s) 324
XbaI TCTAGA 1 cut(s) 299
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.