No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830 |
| malus_domestica | MD12G1228100.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381 |
| rosa_laevigata | RLG00000001612 RLG00000025524 |
| rosa_multiflora | Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340 |
| rosa_rugosa | Rorug02G0648100 Rorug02G0648200 Rorug02G0648300 |
| rosa_samantha | Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000 |
| rosa_wichuraiana | Rw0G005410 Rw3G003870 Rw3G003890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 363 |
| AciI | CCGC | 1 cut(s) | 288 |
| AcoI | YGGCCR | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 234 |
| AgsI | TTSAA | 1 cut(s) | 130 |
| AjnI | CCWGG | 2 cut(s) | 112, 187 |
| AluBI | AGCT | 2 cut(s) | 348, 501 |
| AluI | AGCT | 2 cut(s) | 348, 501 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 217 |
| AoxI | GGCC | 3 cut(s) | 12, 399, 428 |
| ApeKI | GCWGC | 3 cut(s) | 48, 57, 498 |
| AspA2I | CCTAGG | 2 cut(s) | 155, 455 |
| AspS9I | GGNCC | 1 cut(s) | 399 |
| AsuC2I | CCSGG | 1 cut(s) | 481 |
| AsuII | TTCGAA | 1 cut(s) | 573 |
| AvrII | CCTAGG | 2 cut(s) | 155, 455 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 487, 519 |
| BbsI | GAAGAC | 2 cut(s) | 185, 378 |
| BbvI | GCAGC | 3 cut(s) | 35, 69, 510 |
| BccI | CCATC | 2 cut(s) | 229, 439 |
| BceAI | ACGGC | 1 cut(s) | 294 |
| BciT130I | CCWGG | 2 cut(s) | 114, 189 |
| BclI | TGATCA | 1 cut(s) | 463 |
| BcnI | CCSGG | 1 cut(s) | 481 |
| BfaI | CTAG | 5 cut(s) | 156, 165, 315, 345, 456 |
| BfmI | CTRYAG | 1 cut(s) | 141 |
| BisI | GCNGC | 3 cut(s) | 49, 58, 499 |
| BlnI | CCTAGG | 2 cut(s) | 155, 455 |
| BlsI | GCNGC | 3 cut(s) | 50, 59, 500 |
| BmcAI | AGTACT | 1 cut(s) | 234 |
| Bme1390I | CCNGG | 3 cut(s) | 114, 189, 481 |
| BmgT120I | GGNCC | 1 cut(s) | 399 |
| BmrFI | CCNGG | 3 cut(s) | 114, 189, 481 |
| BmsI | GCATC | 4 cut(s) | 299, 311, 329, 422 |
| BpiI | GAAGAC | 2 cut(s) | 185, 378 |
| BpmI | CTGGAG | 1 cut(s) | 213 |
| Bpu10I | CCTNAGC | 1 cut(s) | 443 |
| Bpu14I | TTCGAA | 1 cut(s) | 573 |
| BpuEI | CTTGAG | 1 cut(s) | 352 |
| BpuMI | CCSGG | 1 cut(s) | 481 |
| BsaJI | CCNNGG | 4 cut(s) | 112, 155, 425, 455 |
| Bse118I | RCCGGY | 1 cut(s) | 375 |
| Bse1I | ACTGG | 1 cut(s) | 230 |
| BseBI | CCWGG | 2 cut(s) | 114, 189 |
| BseDI | CCNNGG | 4 cut(s) | 112, 155, 425, 455 |
| BseGI | GGATG | 3 cut(s) | 122, 476, 563 |
| BseMII | CTCAG | 1 cut(s) | 434 |
| BseNI | ACTGG | 1 cut(s) | 230 |
| BseXI | GCAGC | 3 cut(s) | 35, 69, 510 |
| BseYI | CCCAGC | 1 cut(s) | 513 |
| Bsh1285I | CGRYCG | 1 cut(s) | 29 |
| BshFI | GGCC | 3 cut(s) | 14, 401, 430 |
| BsiEI | CGRYCG | 1 cut(s) | 29 |
| BsiSI | CCGG | 2 cut(s) | 376, 481 |
| BsnI | GGCC | 3 cut(s) | 14, 401, 430 |
| Bsp119I | TTCGAA | 1 cut(s) | 573 |
| Bsp143I | GATC | 4 cut(s) | 26, 35, 145, 463 |
| BspACI | CCGC | 1 cut(s) | 288 |
| BspANI | GGCC | 3 cut(s) | 14, 401, 430 |
| BspCNI | CTCAG | 1 cut(s) | 435 |
| BspHI | TCATGA | 2 cut(s) | 148, 622 |
| BspMAI | CTGCAG | 1 cut(s) | 145 |
| BspQI | GCTCTTC | 1 cut(s) | 508 |
| BspT104I | TTCGAA | 1 cut(s) | 573 |
| BsrFI | RCCGGY | 1 cut(s) | 375 |
| BsrI | ACTGG | 1 cut(s) | 230 |
| BssAI | RCCGGY | 1 cut(s) | 375 |
| BssECI | CCNNGG | 4 cut(s) | 112, 155, 425, 455 |
| BssMI | GATC | 4 cut(s) | 26, 35, 145, 463 |
| BssT1I | CCWWGG | 2 cut(s) | 155, 455 |
| Bst2UI | CCWGG | 2 cut(s) | 114, 189 |
| Bst6I | CTCTTC | 2 cut(s) | 255, 508 |
| BstBI | TTCGAA | 1 cut(s) | 573 |
| BstC8I | GCNNGC | 3 cut(s) | 62, 66, 591 |
| BstDEI | CTNAG | 1 cut(s) | 443 |
| BstEII | GGTNACC | 1 cut(s) | 159 |
| BstF5I | GGATG | 3 cut(s) | 122, 476, 563 |
| BstKTI | GATC | 4 cut(s) | 29, 38, 148, 466 |
| BstMBI | GATC | 4 cut(s) | 26, 35, 145, 463 |
| BstMCI | CGRYCG | 1 cut(s) | 29 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 54, 57, 287, 398 |
| BstNI | CCWGG | 2 cut(s) | 114, 189 |
| BstNSI | RCATGY | 2 cut(s) | 68, 357 |
| BstPI | GGTNACC | 1 cut(s) | 159 |
| BstSCI | CCNGG | 3 cut(s) | 112, 187, 479 |
| BstSFI | CTRYAG | 1 cut(s) | 141 |
| BstV1I | GCAGC | 3 cut(s) | 35, 69, 510 |
| BstV2I | GAAGAC | 2 cut(s) | 185, 378 |
| BsuRI | GGCC | 3 cut(s) | 14, 401, 430 |
| BtsCI | GGATG | 3 cut(s) | 122, 476, 563 |
| BtsI | GCAGTG | 2 cut(s) | 198, 215 |
| BtsIMutI | CAGTG | 3 cut(s) | 198, 215, 547 |
| Cac8I | GCNNGC | 3 cut(s) | 62, 66, 591 |
| CaiI | CAGNNNCTG | 1 cut(s) | 217 |
| CciI | TCATGA | 2 cut(s) | 148, 622 |
| Cfr10I | RCCGGY | 1 cut(s) | 375 |
| Cfr13I | GGNCC | 1 cut(s) | 399 |
| CsiI | ACCWGGT | 1 cut(s) | 187 |
| Csp6I | GTAC | 1 cut(s) | 233 |
| CviAII | CATG | 5 cut(s) | 65, 149, 337, 354, 623 |
| CviQI | GTAC | 1 cut(s) | 233 |
| DdeI | CTNAG | 1 cut(s) | 443 |
| DpnI | GATC | 4 cut(s) | 28, 37, 147, 465 |
| DpnII | GATC | 4 cut(s) | 26, 35, 145, 463 |
| EaeI | YGGCCR | 1 cut(s) | 428 |
| Eam1104I | CTCTTC | 2 cut(s) | 255, 508 |
| EarI | CTCTTC | 2 cut(s) | 255, 508 |
| Eco130I | CCWWGG | 2 cut(s) | 155, 455 |
| Eco91I | GGTNACC | 1 cut(s) | 159 |
| EcoO65I | GGTNACC | 1 cut(s) | 159 |
| EcoRII | CCWGG | 2 cut(s) | 112, 187 |
| EcoT14I | CCWWGG | 2 cut(s) | 155, 455 |
| EcoT22I | ATGCAT | 1 cut(s) | 355 |
| ErhI | CCWWGG | 2 cut(s) | 155, 455 |
| FaeI | CATG | 5 cut(s) | 68, 152, 340, 357, 626 |
| FatI | CATG | 5 cut(s) | 64, 148, 336, 353, 622 |
| FbaI | TGATCA | 1 cut(s) | 463 |
| FblI | GTMKAC | 1 cut(s) | 363 |
| Fnu4HI | GCNGC | 3 cut(s) | 49, 58, 499 |
| FokI | GGATG | 3 cut(s) | 129, 463, 570 |
| Fsp4HI | GCNGC | 3 cut(s) | 49, 58, 499 |
| FspBI | CTAG | 5 cut(s) | 156, 165, 315, 345, 456 |
| GluI | GCNGC | 3 cut(s) | 49, 58, 499 |
| GsaI | CCCAGC | 1 cut(s) | 517 |
| GsuI | CTGGAG | 1 cut(s) | 213 |
| HaeIII | GGCC | 3 cut(s) | 14, 401, 430 |
| HapII | CCGG | 2 cut(s) | 376, 481 |
| Hin1II | CATG | 5 cut(s) | 68, 152, 340, 357, 626 |
| HincII | GTYRAC | 1 cut(s) | 364 |
| HindII | GTYRAC | 1 cut(s) | 364 |
| HpaII | CCGG | 2 cut(s) | 376, 481 |
| Hpy166II | GTNNAC | 1 cut(s) | 364 |
| Hpy188I | TCNGA | 1 cut(s) | 408 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 149, 296, 467, 623 |
| Hpy8I | GTNNAC | 1 cut(s) | 364 |
| Hpy99I | CGWCG | 1 cut(s) | 368 |
| HpyAV | CCTTC | 1 cut(s) | 320 |
| HpyCH4V | TGCA | 6 cut(s) | 51, 143, 203, 245, 320, 353 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 54, 57, 287, 398 |
| HpyF3I | CTNAG | 1 cut(s) | 443 |
| Hsp92II | CATG | 5 cut(s) | 68, 152, 340, 357, 626 |
| Ksp22I | TGATCA | 1 cut(s) | 463 |
| Kzo9I | GATC | 4 cut(s) | 26, 35, 145, 463 |
| LguI | GCTCTTC | 1 cut(s) | 508 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| Lsp1109I | GCAGC | 3 cut(s) | 35, 69, 510 |
| LweI | GCATC | 4 cut(s) | 299, 311, 329, 422 |
| MabI | ACCWGGT | 1 cut(s) | 187 |
| MaeI | CTAG | 5 cut(s) | 156, 165, 315, 345, 456 |
| MaeIII | GTNAC | 3 cut(s) | 159, 207, 599 |
| MalI | GATC | 4 cut(s) | 28, 37, 147, 465 |
| MboI | GATC | 4 cut(s) | 26, 35, 145, 463 |
| MluCI | AATT | 1 cut(s) | 548 |
| MnlI | CCTC | 4 cut(s) | 25, 412, 435, 548 |
| Mph1103I | ATGCAT | 1 cut(s) | 355 |
| MslI | CAYNNNNRTG | 2 cut(s) | 252, 540 |
| MspI | CCGG | 2 cut(s) | 376, 481 |
| MspR9I | CCNGG | 3 cut(s) | 114, 189, 481 |
| MvaI | CCWGG | 2 cut(s) | 114, 189 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 54, 57, 287, 398 |
| NciI | CCSGG | 1 cut(s) | 481 |
| NdeII | GATC | 4 cut(s) | 26, 35, 145, 463 |
| NlaIII | CATG | 5 cut(s) | 68, 152, 340, 357, 626 |
| NmeAIII | GCCGAG | 1 cut(s) | 406 |
| NmuCI | GTSAC | 1 cut(s) | 207 |
| NsiI | ATGCAT | 1 cut(s) | 355 |
| NspI | RCATGY | 2 cut(s) | 68, 357 |
| NspV | TTCGAA | 1 cut(s) | 573 |
| PaeI | GCATGC | 1 cut(s) | 68 |
| PagI | TCATGA | 2 cut(s) | 148, 622 |
| PciSI | GCTCTTC | 1 cut(s) | 508 |
| PkrI | GCNGC | 3 cut(s) | 50, 59, 500 |
| Ple19I | CGATCG | 1 cut(s) | 29 |
| Psp6I | CCWGG | 2 cut(s) | 112, 187 |
| PspEI | GGTNACC | 1 cut(s) | 159 |
| PspFI | CCCAGC | 1 cut(s) | 513 |
| PspGI | CCWGG | 2 cut(s) | 112, 187 |
| PspPI | GGNCC | 1 cut(s) | 399 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 144, 176 |
| PstI | CTGCAG | 1 cut(s) | 145 |
| PstNI | CAGNNNCTG | 1 cut(s) | 217 |
| PvuI | CGATCG | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 234 |
| RsaNI | GTAC | 1 cut(s) | 233 |
| RseI | CAYNNNNRTG | 2 cut(s) | 252, 540 |
| SalI | GTCGAC | 1 cut(s) | 362 |
| SapI | GCTCTTC | 1 cut(s) | 508 |
| SatI | GCNGC | 3 cut(s) | 49, 58, 499 |
| Sau3AI | GATC | 4 cut(s) | 26, 35, 145, 463 |
| Sau96I | GGNCC | 1 cut(s) | 399 |
| ScaI | AGTACT | 1 cut(s) | 234 |
| ScrFI | CCNGG | 3 cut(s) | 114, 189, 481 |
| SexAI | ACCWGGT | 1 cut(s) | 187 |
| SfaNI | GCATC | 4 cut(s) | 299, 311, 329, 422 |
| SfcI | CTRYAG | 1 cut(s) | 141 |
| SfuI | TTCGAA | 1 cut(s) | 573 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 252, 540 |
| SmlI | CTYRAG | 1 cut(s) | 331 |
| SmoI | CTYRAG | 1 cut(s) | 331 |
| SphI | GCATGC | 1 cut(s) | 68 |
| Sse9I | AATT | 1 cut(s) | 548 |
| SsiI | CCGC | 1 cut(s) | 288 |
| SspMI | CTAG | 5 cut(s) | 156, 165, 315, 345, 456 |
| StyD4I | CCNGG | 3 cut(s) | 112, 187, 479 |
| StyI | CCWWGG | 2 cut(s) | 155, 455 |
| TaqI | TCGA | 6 cut(s) | 17, 29, 87, 99, 363, 573 |
| TasI | AATT | 1 cut(s) | 548 |
| TatI | WGTACW | 1 cut(s) | 232 |
| TscAI | CASTG | 3 cut(s) | 205, 222, 547 |
| TseFI | GTSAC | 1 cut(s) | 207 |
| TseI | GCWGC | 3 cut(s) | 48, 57, 498 |
| Tsp45I | GTSAC | 1 cut(s) | 207 |
| TspDTI | ATGAA | 5 cut(s) | 147, 165, 270, 353, 639 |
| TspRI | CASTG | 3 cut(s) | 205, 222, 547 |
| XceI | RCATGY | 2 cut(s) | 68, 357 |
| XmaJI | CCTAGG | 2 cut(s) | 155, 455 |
| XmiI | GTMKAC | 1 cut(s) | 363 |
| XspI | CTAG | 5 cut(s) | 156, 165, 315, 345, 456 |
| ZrmI | AGTACT | 1 cut(s) | 234 |
| Zsp2I | ATGCAT | 1 cut(s) | 355 |