Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Reverse (-)

3506574 .. 3510015

Gene Structure 3442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG050500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGAGGGAGTTTTTCCGACGTGAAAGGTGGCAAGCAGGCCGTTGAGCTCTTTAACGGCTACCGTGGGGTTTATCCTCTCTACACTTCGCTCGAGTGTTTTGATGGAGTGAGGACAGTTGATCAGTTCAAAGCACTGGAAAGATATCTGAAAGCCGACAATACTGCCAATCGCTACTGTGGTATTTGTGGAGGTACTCTCTTGCAATGTGCCGTCCGAAACAGGCAAGTGGATGTTGTTCGTCTACTTCTTTCTAGTGGAGCTGATATCTTCAAGACTAATGATGGACATCTTCCTCTCCACATTGCTAAGGAAGAAGGGTACCACACAATTGTCCGTTTATTTGAGGATCATCTCTTTGCTGAAAATGAAAACCGGCGGTTGGTTATGGCGAATAGAGCTTCGCTGGACCTTGCATATTTGCCCAGCAGTTCGTTTTCTTCCAAGCCAAGTCATGCTGCAGATTCACATCTACTGCCATCTGCTCCACCACTACCACCACAGCTAGTGGTGTTGGAGGAAGTATCAAACTTTCATGCGGCATCTCCCAGATTGAGCAGAAGCTCTAGCTATATTCCAGAATGGTCAGATTACTGGGGCAGACCAACTCCAGATGCACCTAACAGTTTTACTTCTTCTGTGCCAAGTCATGGTGAAGGTTCACAGCCACTACCATCTCCACCACTAACTGTTCCACCACTAGCAGCACTTCCTGAAGAAGAAGACACCAATGATGAGGAAGAAGAGCGTCAAGTGGCTATGGCAAGTCTGGTCTCTTTGGAGCCTGATTTGCAAGAAGGAATCATCCCACAATGGTCATTTTGGCTGGATGAACCAATTGGAGAGGCACCTAGCAGTTCTACACCTTTGCAACGAGGTCAAGCTACAGGTTCACAGTCACTGTCATCTGCTCAACAAGTTCCAAATGATTCCAGTAGCAGTCGAGCATGCGAGTACTGTTATGATGCTCCGATCGAAGCAGCTTGTGATCCCTGTGGGCATGTTGCTTGCTTCAACTGCTGGCTAAAGATTCAGGACTCTGCAAACAAGTGCCCTCATTGTCGAGTAGAGATCAAGAAGATTATCAAGCTTTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

366

Amino Acids

40.17

Weight (kDa)

5.05

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	45 - 115	3.6e-08	Ankyrin repeats (3 copies)
zf-C3HC4_3	PF13920	315 - 360	3.2e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	321, 847
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	2 cut(s)	379, 539
AclWI	GGATC	2 cut(s)	357, 983
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	3 cut(s)	196, 323, 956
AfiI	CCNNNNNNNGG	2 cut(s)	382, 650
AgsI	TTSAA	3 cut(s)	130, 274, 1015
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	9 cut(s)	49, 263, 401, 505, 564, 570, 884, 983, 1090
AluI	AGCT	9 cut(s)	49, 263, 401, 505, 564, 570, 884, 983, 1090
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	778
AlwI	GGATC	2 cut(s)	357, 983
AlwNI	CAGNNNCTG	1 cut(s)	901
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	458, 704, 980
Asp718I	GGTACC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	665
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	1055
BanI	GGYRCC	2 cut(s)	321, 847
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	445, 716, 992
BccI	CCATC	4 cut(s)	98, 278, 487, 682
BceAI	ACGGC	3 cut(s)	26, 73, 197
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	5 cut(s)	255, 506, 567, 701, 852
BfmI	CTRYAG	2 cut(s)	459, 885
BisI	GCNGC	4 cut(s)	459, 540, 705, 981
BlsI	GCNGC	4 cut(s)	460, 541, 706, 982
BmcAI	AGTACT	1 cut(s)	956
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	323, 783, 849
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	3 cut(s)	551, 604, 955
BmuI	ACTGGG	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	729
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	309
BsaBI	GATNNNNATC	2 cut(s)	288, 468
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 650
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	141, 599, 933
Bse3DI	GCAATG	2 cut(s)	212, 303
Bse8I	GATNNNNATC	2 cut(s)	288, 468
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	3 cut(s)	238, 804, 835
BseJI	GATNNNNATC	2 cut(s)	288, 468
BseLI	CCNNNNNNNGG	2 cut(s)	382, 650
BseMI	GCAATG	2 cut(s)	212, 303
BseNI	ACTGG	3 cut(s)	141, 599, 933
BseSI	GKGCMC	1 cut(s)	1055
BseXI	GCAGC	3 cut(s)	445, 716, 992
BseYI	CCCAGC	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	975
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	2 cut(s)	321, 847
BsiEI	CGRYCG	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	382, 650
BsmAI	GTCTC	1 cut(s)	778
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	778
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	51, 1055
Bsp143I	GATC	5 cut(s)	121, 349, 972, 988, 1071
BspACI	CCGC	2 cut(s)	379, 539
BspANI	GGCC	1 cut(s)	41
BspLI	GGNNCC	3 cut(s)	323, 783, 849
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	2 cut(s)	357, 983
BspQI	GCTCTTC	1 cut(s)	738
BspT107I	GGYRCC	2 cut(s)	321, 847
BspTNI	GGTCTC	1 cut(s)	778
BsrDI	GCAATG	2 cut(s)	212, 303
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	141, 599, 933
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	5 cut(s)	121, 349, 972, 988, 1071
Bst4CI	ACNGT	8 cut(s)	65, 118, 179, 626, 691, 897, 903, 959
Bst6I	CTCTTC	1 cut(s)	738
BstC8I	GCNNGC	5 cut(s)	35, 39, 949, 1009, 1022
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	238, 804, 835
BstKTI	GATC	5 cut(s)	124, 352, 975, 991, 1074
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	5 cut(s)	121, 349, 972, 988, 1071
BstMCI	CGRYCG	1 cut(s)	975
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 790, 1017
BstNSI	RCATGY	2 cut(s)	951, 1004
BstSFI	CTRYAG	2 cut(s)	459, 885
BstSLI	GKGCMC	1 cut(s)	1055
BstV1I	GCAGC	3 cut(s)	445, 716, 992
BstV2I	GAAGAC	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	238, 804, 835
BtsIMutI	CAGTG	2 cut(s)	134, 899
Cac8I	GCNNGC	5 cut(s)	35, 39, 949, 1009, 1022
CaiI	CAGNNNCTG	1 cut(s)	901
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	195, 322, 955
CviAII	CATG	5 cut(s)	455, 536, 650, 948, 1001
CviQI	GTAC	3 cut(s)	195, 322, 955
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	5 cut(s)	123, 351, 974, 990, 1073
DpnII	GATC	5 cut(s)	121, 349, 972, 988, 1071
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	778
Eco32I	GATATC	2 cut(s)	146, 268
Eco47I	GGWCC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	49
EcoRV	GATATC	2 cut(s)	146, 268
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	5 cut(s)	458, 539, 653, 951, 1004
FatI	CATG	5 cut(s)	454, 535, 649, 947, 1000
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	459, 540, 705, 981
FokI	GGATG	3 cut(s)	245, 791, 842
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	459, 540, 705, 981
FspBI	CTAG	5 cut(s)	255, 506, 567, 701, 852
GluI	GCNGC	4 cut(s)	459, 540, 705, 981
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	737
Hin1II	CATG	5 cut(s)	458, 539, 653, 951, 1004
HindIII	AAGCTT	1 cut(s)	1088
HinfI	GANTC	5 cut(s)	464, 801, 929, 1030, 1037
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	3 cut(s)	245, 662, 893
Hpy188I	TCNGA	5 cut(s)	19, 150, 218, 589, 972
Hpy188III	TCNNGA	6 cut(s)	274, 578, 611, 713, 1034, 1075
Hpy8I	GTNNAC	3 cut(s)	245, 662, 893
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	311, 650, 791
HpyCH4III	ACNGT	8 cut(s)	65, 118, 179, 626, 691, 897, 903, 959
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	7 cut(s)	205, 416, 461, 617, 793, 871, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 790, 1017
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	458, 539, 653, 951, 1004
KpnI	GGTACC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	121, 349, 972, 988, 1071
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	4 cut(s)	260, 490, 781, 973
Lsp1109I	GCAGC	3 cut(s)	445, 716, 992
LweI	GCATC	3 cut(s)	551, 604, 955
MaeI	CTAG	5 cut(s)	255, 506, 567, 701, 852
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	897
MalI	GATC	5 cut(s)	123, 351, 974, 990, 1073
MboI	GATC	5 cut(s)	121, 349, 972, 988, 1071
MfeI	CAATTG	2 cut(s)	330, 837
MhlI	GDGCHC	2 cut(s)	51, 1055
MluCI	AATT	2 cut(s)	330, 837
MlyI	GAGTC	1 cut(s)	1031
MmeI	TCCRAC	2 cut(s)	42, 495
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	376
MunI	CAATTG	2 cut(s)	330, 837
MwoI	GCNNNNNNNGC	3 cut(s)	398, 790, 1017
NdeII	GATC	5 cut(s)	121, 349, 972, 988, 1071
NlaIII	CATG	5 cut(s)	458, 539, 653, 951, 1004
NlaIV	GGNNCC	3 cut(s)	323, 783, 849
NmuCI	GTSAC	1 cut(s)	897
NspI	RCATGY	2 cut(s)	951, 1004
PaeI	GCATGC	1 cut(s)	951
PaeR7I	CTCGAG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	738
PfeI	GAWTC	4 cut(s)	464, 801, 929, 1030
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	4 cut(s)	460, 541, 706, 982
Ple19I	CGATCG	1 cut(s)	975
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	323, 783, 849
PspPI	GGNCC	1 cut(s)	409
PspXI	VCTCGAGB	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	901
PvuI	CGATCG	1 cut(s)	975
RsaI	GTAC	3 cut(s)	196, 323, 956
RsaNI	GTAC	3 cut(s)	195, 322, 955
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	4 cut(s)	459, 540, 705, 981
Sau3AI	GATC	5 cut(s)	121, 349, 972, 988, 1071
Sau96I	GGNCC	1 cut(s)	409
ScaI	AGTACT	1 cut(s)	956
SchI	GAGTC	1 cut(s)	1031
SduI	GDGCHC	2 cut(s)	51, 1055
SfaNI	GCATC	3 cut(s)	551, 604, 955
SfcI	CTRYAG	2 cut(s)	459, 885
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	409
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	951
Sse9I	AATT	2 cut(s)	330, 837
SsiI	CCGC	2 cut(s)	379, 539
SspMI	CTAG	5 cut(s)	255, 506, 567, 701, 852
SstI	GAGCTC	1 cut(s)	51
TaaI	ACNGT	8 cut(s)	65, 118, 179, 626, 691, 897, 903, 959
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	4 cut(s)	93, 943, 975, 1063
TasI	AATT	2 cut(s)	330, 837
TatI	WGTACW	1 cut(s)	954
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	4 cut(s)	464, 801, 929, 1030
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	141, 906
TseFI	GTSAC	1 cut(s)	897
TseI	GCWGC	3 cut(s)	458, 704, 980
Tsp45I	GTSAC	1 cut(s)	897
TspDTI	ATGAA	3 cut(s)	384, 524, 846
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	141, 906
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	409
XceI	RCATGY	2 cut(s)	951, 1004
XhoI	CTCGAG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	5 cut(s)	255, 506, 567, 701, 852
ZrmI	AGTACT	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.