Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

3598492 .. 3605207

Gene Structure 6716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG051400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGGAGGGTGTTTTTCCGACGTGAAAGGTGGCAAGCAGGGCGTGGGATGTGGGGCCCATCATCTTCAACAACAGAGGCCCATCAACAGGGACGCTGACACAAACGACGCCGTTGAGCTCTTTAACCGCTCCCGTGGCGTTTTTCCACTCTACACTCCGGTTGAGTTTTGTGATTCTTTTGTGAATTTCAGTACAGGAACTGTAGAAAATAAAGGAAGAGTTGTTGGAGCTGAAAAGGAAGAGACCACTAGATCCCCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

87

Amino Acids

9.44

Weight (kDa)

6.06

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	3 cut(s)	118, 230, 261
AluI	AGCT	3 cut(s)	118, 230, 261
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	54, 77
ApaI	GGGCCC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	3 cut(s)	54, 55, 78
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	58, 120
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	2 cut(s)	66, 89
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	249, 258
BfmI	CTRYAG	1 cut(s)	201
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	54, 55, 78
BmiI	GGNNCC	2 cut(s)	55, 56
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	56, 79
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	56, 79
Bso31I	GGTCTC	1 cut(s)	236
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	58, 120
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	2 cut(s)	56, 79
BspLI	GGNNCC	2 cut(s)	55, 56
BspPI	GGATC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	211, 234
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 135
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	56, 79
BtgI	CCRYGG	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	54, 55, 78
CseI	GACGC	2 cut(s)	101, 116
Csp6I	GTAC	1 cut(s)	192
CviJI	RGCY	5 cut(s)	56, 79, 118, 230, 261
CviKI_1	RGCY	5 cut(s)	56, 79, 118, 230, 261
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	211, 234
EarI	CTCTTC	2 cut(s)	211, 234
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	58, 120
Eco31I	GGTCTC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	58, 120
FaqI	GGGAC	1 cut(s)	104
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	2 cut(s)	58, 120
FspBI	CTAG	2 cut(s)	249, 258
HaeIII	GGCC	2 cut(s)	56, 79
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	2 cut(s)	101, 116
Hin1I	GRCGYC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	19
Hpy99I	CGWCG	2 cut(s)	23, 110
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 135
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	134, 227
LpnPI	CCDG	4 cut(s)	23, 73, 171, 180
MaeI	CTAG	2 cut(s)	249, 258
MaeII	ACGT	1 cut(s)	21
MalI	GATC	1 cut(s)	253
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	1 cut(s)	251
MboII	GAAGA	3 cut(s)	56, 228, 251
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	58, 120
MluCI	AATT	1 cut(s)	184
MmeI	TCCRAC	2 cut(s)	42, 205
MnlI	CCTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	39, 135
NdeII	GATC	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	55, 56
PfeI	GAWTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	55, 56
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	3 cut(s)	54, 55, 78
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	3 cut(s)	54, 55, 78
SduI	GDGCHC	2 cut(s)	58, 120
SetI	ASST	5 cut(s)	24, 31, 120, 232, 263
SfcI	CTRYAG	1 cut(s)	201
SgeI	CNNG	9 cut(s)	34, 46, 50, 55, 100, 144, 146, 170, 207
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	249, 258
SstI	GAGCTC	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	24
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	2 cut(s)	249, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.