Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Reverse (-)

3506574 .. 3514254

Gene Structure 7681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG051800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGGAGGTTCCGTCTCGAAGAAGCGAGCCGAAGAAAGGTCCAGCAGGCATGGCTATGGTCAAGAATGTTTTGATTATGTTTTCAACTACTTATCCCCACAATCCTCATACTTCGATGGATCAACTGCGGATGCACCTAGCAGTTCTATTTCTTCTGAACCAAGTCTTCATACTGCAATTTCACAGCCCCCGCCGTCTGCTCCACGACTACCAGATGCATACGATGACGAAGAAGAGCGTCAGATGGATATGGCGATGAGGGCCTCTCTGAAAGCACCAAACTTTCCTAGGGCATTTTCTACCTTGAGAATGAACCCTAGCTATGAATACGATGACGAAGAAGAGCGGCAGATCGGTATGGCGATTAGGGCATCTTCTACCTTGAGCAAGAACCCTAGCTATGGTCATCTCGGTTTGATATTGTGTTTTGATGGAGTGAGGACAGTTGATCAGTTCAAAGCACTGGAAAGATATCTGAAAGCCGACAATACTGCCAATCGCTACTGTGGTATTTGTGGAGGTACTCTCTTGCAATGTGCCGTCCGAAACAGGCAAGTGGATGTTGTTCGTCTACTTCTTTCTAGTGGAGCTGATATCTTCAAGACTAATGATGGACATCTTCCTCTCCACATTGCTAAGGAAGAAGGGTACCACACAATTGTCCGTTTATTTGAGGATCATCTCTTTGCTGAAAATGAAAACCGGCGGTTGGTTATGGCGAATAGAGCTTCGCTGGACCTTGCATATTTGCCCAGCAGTTCGTTTTCTTCCAAGCCAAGTCATGCTGCAGATTCACATCTACTGCCATCTGCTCCACCACTACCACCACAGCTAGTGGTGTTGGAGGAAGTATCAAACTTTCATGCGGCATCTCCCAGATTGAGCAGAAGCTCTAGCTATATTCCAGAATGGTCAGATTACTGGGGCAGACCAACTCCAGATGCACCTAACAGTTTTACTTCTTCTGTGCCAAGTCATGGTGAAGGTTCACAGCCACTACCATCTCCACCACTAACTGTTCCACCACTAGCAGCACTTCCTGAAGAAGAAGACACCAATGATGAGGAAGAAGAGCGTCAAGTGGCTATGGCAAGTCTGGTCTCTTTGGAGCCTGATTTGCAAGAAGGAATCATCCCACAATGGTCATTTTGGCTGGATGAACCAATTGGAGAGGCACCTAGCAGTTCTACACCTTTGCAACGAGGTCAAGCTACAGGTTCACAGTCACTGTCATCTGCTCAACAAGTTCCAAATGATTCCAGTAGCAGTCGAGCATGCGAGTACTGTTATGATGCTCCGATCGAAGCAGCTTGTGATCCCTGTGGGCATGTTGCTTGCTTCAACTGCTGGCTAAAGATTCAGGACTCTGCAAACAAGTGCCCTCATTGTCGAGTAGAGATCAAGAAGATTATCAAGCTTTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

475

Amino Acids

52.35

Weight (kDa)

5.01

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	154 - 223	5.7e-08	Ankyrin repeats (3 copies)
zf-C3HC4_3	PF13920	424 - 469	4.5e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	648
AccB1I	GGYRCC	2 cut(s)	648, 1174
AccB7I	CCANNNNNTGG	1 cut(s)	977
AccBSI	CCGCTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	571
AciI	CCGC	5 cut(s)	128, 191, 346, 706, 866
AclWI	GGATC	3 cut(s)	127, 684, 1310
AcuI	CTGAAG	1 cut(s)	1062
AfaI	GTAC	3 cut(s)	523, 650, 1283
AfiI	CCNNNNNNNGG	4 cut(s)	36, 401, 709, 977
AgsI	TTSAA	4 cut(s)	85, 457, 601, 1342
Alw26I	GTCTC	2 cut(s)	19, 1105
AlwI	GGATC	3 cut(s)	127, 684, 1310
AlwNI	CAGNNNCTG	1 cut(s)	1228
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	785, 1031, 1307
Asp718I	GGTACC	1 cut(s)	648
AspA2I	CCTAGG	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	39, 261, 736
AsuHPI	GGTGA	1 cut(s)	992
AvaII	GGWCC	2 cut(s)	39, 736
AvrII	CCTAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	1382
BanI	GGYRCC	2 cut(s)	648, 1174
BbsI	GAAGAC	2 cut(s)	158, 1056
BbvI	GCAGC	3 cut(s)	772, 1043, 1319
BccI	CCATC	6 cut(s)	110, 238, 425, 605, 814, 1009
BceAI	ACGGC	2 cut(s)	178, 524
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	19, 1105
BfaI	CTAG	9 cut(s)	138, 288, 318, 396, 582, 833, 894, 1028, 1179
BfmI	CTRYAG	2 cut(s)	786, 1212
BisI	GCNGC	5 cut(s)	347, 786, 867, 1032, 1308
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	5 cut(s)	348, 787, 868, 1033, 1309
BmcAI	AGTACT	1 cut(s)	1283
Bme18I	GGWCC	2 cut(s)	39, 736
BmgT120I	GGNCC	3 cut(s)	39, 261, 736
BmiI	GGNNCC	4 cut(s)	10, 650, 1110, 1176
BmrI	ACTGGG	1 cut(s)	931
BmsI	GCATC	6 cut(s)	121, 205, 380, 878, 931, 1282
BmuI	ACTGGG	1 cut(s)	931
BpiI	GAAGAC	2 cut(s)	158, 1056
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 510, 542
BpmI	CTGGAG	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	325, 403
BsaBI	GATNNNNATC	2 cut(s)	615, 795
BsaI	GGTCTC	1 cut(s)	1105
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 401, 709, 977
Bse118I	RCCGGY	1 cut(s)	702
Bse1I	ACTGG	3 cut(s)	468, 926, 1260
Bse3DI	GCAATG	2 cut(s)	539, 630
Bse8I	GATNNNNATC	2 cut(s)	615, 795
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	4 cut(s)	136, 565, 1131, 1162
BseJI	GATNNNNATC	2 cut(s)	615, 795
BseLI	CCNNNNNNNGG	4 cut(s)	36, 401, 709, 977
BseMI	GCAATG	2 cut(s)	539, 630
BseNI	ACTGG	3 cut(s)	468, 926, 1260
BseSI	GKGCMC	1 cut(s)	1382
BseXI	GCAGC	3 cut(s)	772, 1043, 1319
BseYI	CCCAGC	1 cut(s)	752
Bsh1285I	CGRYCG	1 cut(s)	1302
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	2 cut(s)	648, 1174
BsiEI	CGRYCG	1 cut(s)	1302
BsiSI	CCGG	1 cut(s)	703
BslI	CCNNNNNNNGG	4 cut(s)	36, 401, 709, 977
BsmAI	GTCTC	2 cut(s)	19, 1105
BsmBI	CGTCTC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	1105
Bsp1286I	GDGCHC	1 cut(s)	1382
Bsp143I	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
BspACI	CCGC	5 cut(s)	128, 191, 346, 706, 866
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	10, 650, 1110, 1176
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	3 cut(s)	127, 684, 1310
BspQI	GCTCTTC	3 cut(s)	228, 336, 1065
BspT107I	GGYRCC	2 cut(s)	648, 1174
BspTNI	GGTCTC	1 cut(s)	1105
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	539, 630
BsrFI	RCCGGY	1 cut(s)	702
BsrI	ACTGG	3 cut(s)	468, 926, 1260
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	7 cut(s)	445, 506, 953, 1018, 1224, 1230, 1286
Bst6I	CTCTTC	3 cut(s)	228, 336, 1065
BstC8I	GCNNGC	5 cut(s)	27, 47, 1276, 1336, 1349
BstDEI	CTNAG	1 cut(s)	636
BstF5I	GGATG	4 cut(s)	136, 565, 1131, 1162
BstKTI	GATC	7 cut(s)	122, 354, 451, 679, 1302, 1318, 1401
BstMAI	GTCTC	2 cut(s)	19, 1105
BstMBI	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
BstMCI	CGRYCG	1 cut(s)	1302
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 260, 368, 725, 1117, 1344
BstNSI	RCATGY	2 cut(s)	1278, 1331
BstSFI	CTRYAG	2 cut(s)	786, 1212
BstSLI	GKGCMC	1 cut(s)	1382
BstV1I	GCAGC	3 cut(s)	772, 1043, 1319
BstV2I	GAAGAC	2 cut(s)	158, 1056
BsuRI	GGCC	1 cut(s)	263
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	4 cut(s)	136, 565, 1131, 1162
BtsIMutI	CAGTG	2 cut(s)	461, 1226
Cac8I	GCNNGC	5 cut(s)	27, 47, 1276, 1336, 1349
CaiI	CAGNNNCTG	1 cut(s)	1228
Cfr10I	RCCGGY	1 cut(s)	702
Cfr13I	GGNCC	3 cut(s)	39, 261, 736
CseI	GACGC	2 cut(s)	227, 1064
Csp6I	GTAC	3 cut(s)	522, 649, 1282
CviAII	CATG	6 cut(s)	50, 782, 863, 977, 1275, 1328
CviQI	GTAC	3 cut(s)	522, 649, 1282
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	7 cut(s)	121, 353, 450, 678, 1301, 1317, 1400
DpnII	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
Eam1104I	CTCTTC	3 cut(s)	228, 336, 1065
EarI	CTCTTC	3 cut(s)	228, 336, 1065
Eco130I	CCWWGG	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	1105
Eco32I	GATATC	2 cut(s)	473, 595
Eco47I	GGWCC	2 cut(s)	39, 736
Eco57I	CTGAAG	1 cut(s)	1062
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRV	GATATC	2 cut(s)	473, 595
EcoT14I	CCWWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	6 cut(s)	53, 785, 866, 980, 1278, 1331
FatI	CATG	6 cut(s)	49, 781, 862, 976, 1274, 1327
FauI	CCCGC	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	5 cut(s)	347, 786, 867, 1032, 1308
FokI	GGATG	4 cut(s)	143, 572, 1118, 1169
Fsp4HI	GCNGC	5 cut(s)	347, 786, 867, 1032, 1308
FspBI	CTAG	9 cut(s)	138, 288, 318, 396, 582, 833, 894, 1028, 1179
GluI	GCNGC	5 cut(s)	347, 786, 867, 1032, 1308
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	703
HgaI	GACGC	2 cut(s)	227, 1064
Hin1II	CATG	6 cut(s)	53, 785, 866, 980, 1278, 1331
HindIII	AAGCTT	1 cut(s)	1415
HinfI	GANTC	5 cut(s)	791, 1128, 1256, 1357, 1364
HpaII	CCGG	1 cut(s)	703
HphI	GGTGA	1 cut(s)	992
Hpy166II	GTNNAC	3 cut(s)	572, 989, 1220
Hpy188I	TCNGA	7 cut(s)	157, 243, 270, 477, 545, 916, 1299
Hpy188III	TCNNGA	8 cut(s)	16, 62, 601, 905, 938, 1040, 1361, 1402
Hpy8I	GTNNAC	3 cut(s)	572, 989, 1220
HpyAV	CCTTC	3 cut(s)	638, 977, 1118
HpyCH4III	ACNGT	7 cut(s)	445, 506, 953, 1018, 1224, 1230, 1286
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 260, 368, 725, 1117, 1344
HpyF3I	CTNAG	1 cut(s)	636
Hsp92II	CATG	6 cut(s)	53, 785, 866, 980, 1278, 1331
KpnI	GGTACC	1 cut(s)	652
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
LguI	GCTCTTC	3 cut(s)	228, 336, 1065
LmnI	GCTCC	5 cut(s)	205, 587, 817, 1108, 1300
Lsp1109I	GCAGC	3 cut(s)	772, 1043, 1319
LweI	GCATC	6 cut(s)	121, 205, 380, 878, 931, 1282
MaeI	CTAG	9 cut(s)	138, 288, 318, 396, 582, 833, 894, 1028, 1179
MaeIII	GTNAC	1 cut(s)	1224
MalI	GATC	7 cut(s)	121, 353, 450, 678, 1301, 1317, 1400
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
MfeI	CAATTG	2 cut(s)	657, 1164
MhlI	GDGCHC	1 cut(s)	1382
MluCI	AATT	3 cut(s)	177, 657, 1164
MlyI	GAGTC	1 cut(s)	1358
MmeI	TCCRAC	1 cut(s)	822
Mph1103I	ATGCAT	1 cut(s)	220
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	1 cut(s)	703
MunI	CAATTG	2 cut(s)	657, 1164
MwoI	GCNNNNNNNGC	6 cut(s)	51, 260, 368, 725, 1117, 1344
NdeII	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
NlaIII	CATG	6 cut(s)	53, 785, 866, 980, 1278, 1331
NlaIV	GGNNCC	4 cut(s)	10, 650, 1110, 1176
NmuCI	GTSAC	1 cut(s)	1224
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	2 cut(s)	1278, 1331
PaeI	GCATGC	1 cut(s)	1278
PciSI	GCTCTTC	3 cut(s)	228, 336, 1065
PfeI	GAWTC	4 cut(s)	791, 1128, 1256, 1357
PflMI	CCANNNNNTGG	1 cut(s)	977
PkrI	GCNGC	5 cut(s)	348, 787, 868, 1033, 1309
Ple19I	CGATCG	1 cut(s)	1302
PleI	GAGTC	1 cut(s)	1358
PpsI	GAGTC	1 cut(s)	1358
PspFI	CCCAGC	1 cut(s)	752
PspN4I	GGNNCC	4 cut(s)	10, 650, 1110, 1176
PspPI	GGNCC	3 cut(s)	39, 261, 736
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	1228
PvuI	CGATCG	1 cut(s)	1302
RsaI	GTAC	3 cut(s)	523, 650, 1283
RsaNI	GTAC	3 cut(s)	522, 649, 1282
RseI	CAYNNNNRTG	1 cut(s)	54
SapI	GCTCTTC	3 cut(s)	228, 336, 1065
SatI	GCNGC	5 cut(s)	347, 786, 867, 1032, 1308
Sau3AI	GATC	7 cut(s)	119, 351, 448, 676, 1299, 1315, 1398
Sau96I	GGNCC	3 cut(s)	39, 261, 736
ScaI	AGTACT	1 cut(s)	1283
SchI	GAGTC	1 cut(s)	1358
SduI	GDGCHC	1 cut(s)	1382
SfaNI	GCATC	6 cut(s)	121, 205, 380, 878, 931, 1282
SfcI	CTRYAG	2 cut(s)	786, 1212
SinI	GGWCC	2 cut(s)	39, 736
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	304, 382
SmoI	CTYRAG	2 cut(s)	304, 382
SphI	GCATGC	1 cut(s)	1278
Sse9I	AATT	3 cut(s)	177, 657, 1164
SsiI	CCGC	5 cut(s)	128, 191, 346, 706, 866
SspMI	CTAG	9 cut(s)	138, 288, 318, 396, 582, 833, 894, 1028, 1179
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	7 cut(s)	445, 506, 953, 1018, 1224, 1230, 1286
TaqI	TCGA	5 cut(s)	17, 114, 1270, 1302, 1390
TasI	AATT	3 cut(s)	177, 657, 1164
TatI	WGTACW	1 cut(s)	1281
TauI	GCSGC	2 cut(s)	349, 869
TfiI	GAWTC	4 cut(s)	791, 1128, 1256, 1357
TscAI	CASTG	2 cut(s)	468, 1233
TseFI	GTSAC	1 cut(s)	1224
TseI	GCWGC	3 cut(s)	785, 1031, 1307
Tsp45I	GTSAC	1 cut(s)	1224
TspDTI	ATGAA	6 cut(s)	158, 326, 339, 711, 851, 1173
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	468, 1233
Van91I	CCANNNNNTGG	1 cut(s)	977
VpaK11BI	GGWCC	2 cut(s)	39, 736
XceI	RCATGY	2 cut(s)	1278, 1331
XmaJI	CCTAGG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	571
XspI	CTAG	9 cut(s)	138, 288, 318, 396, 582, 833, 894, 1028, 1179
ZrmI	AGTACT	1 cut(s)	1283
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.