Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008487.1

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

54264 .. 54869

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008487.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgccatgcagttctacacctttgcaacgaggtcaagctacaggttcacagtcactgtcatctgctcaacaaattccaaatgattccagtagcagtcgagaatgcaagtactgttatgatgctccaatcgaagcagcttgtgatccctgccggcatgatgcttgcttcaagctacaggttccactaccatctccaccactaactgttccaccactagcagcacttcctgaagaagaagacaccaatgatgaggaagaagagcgtcaagcgggtgtggcaattatggtctctttggagcctgatttgcaagaaggaatcatcccacaatggtcattttggctggatgaaccaattggagaggcacctagcagttctacacctttgcaacgaggtcaagctacaggttcacagtcactgtcatctgctcaacaacattccggtagcagtcgagaatgcgagtactgttatgatgctccgatcgaagcagcttgtgatccctgtggacatgttgcttgcttcaactgctggctaaagattcaggactctgcaaacaagtgccctctttgtcgagtagagatcaagaagattatcaagctttatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

201

Amino Acids

21.88

Weight (kDa)

4.49

Isoelectric Point (pI)

88.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	2 cut(s)	137, 488
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	110, 461
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	169, 520
AluBI	AGCT	6 cut(s)	38, 137, 172, 398, 488, 595
AluI	AGCT	6 cut(s)	38, 137, 172, 398, 488, 595
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	137, 488
AlwNI	CAGNNNCTG	2 cut(s)	55, 415
ApeKI	GCWGC	3 cut(s)	134, 218, 485
ApoI	RAATTY	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	146, 230, 497
BccI	CCATC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	215, 366
BfmI	CTRYAG	3 cut(s)	39, 173, 399
BisI	GCNGC	3 cut(s)	135, 219, 486
BlsI	GCNGC	3 cut(s)	136, 220, 487
BmcAI	AGTACT	2 cut(s)	110, 461
BmiI	GGNNCC	3 cut(s)	180, 297, 363
BmsI	GCATC	3 cut(s)	109, 148, 460
BpiI	GAAGAC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	318, 349
BseNI	ACTGG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	146, 230, 497
Bsh1285I	CGRYCG	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	480
BsiSI	CCGG	2 cut(s)	151, 438
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	2 cut(s)	107, 458
Bso31I	GGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	4 cut(s)	142, 477, 493, 576
BspACI	CCGC	1 cut(s)	269
BspLI	GGNNCC	3 cut(s)	180, 297, 363
BspPI	GGATC	2 cut(s)	137, 488
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	150
BssMI	GATC	4 cut(s)	142, 477, 493, 576
Bst4CI	ACNGT	7 cut(s)	51, 57, 113, 205, 411, 417, 464
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	152, 163, 514, 527
BstF5I	GGATG	2 cut(s)	318, 349
BstKTI	GATC	4 cut(s)	145, 480, 496, 579
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	4 cut(s)	142, 477, 493, 576
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 304, 522
BstNSI	RCATGY	1 cut(s)	509
BstSFI	CTRYAG	3 cut(s)	39, 173, 399
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	3 cut(s)	146, 230, 497
BstV2I	GAAGAC	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	318, 349
BtsIMutI	CAGTG	2 cut(s)	53, 413
Cac8I	GCNNGC	4 cut(s)	152, 163, 514, 527
CaiI	CAGNNNCTG	2 cut(s)	55, 415
Cfr10I	RCCGGY	1 cut(s)	150
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	109, 460
CviAII	CATG	3 cut(s)	6, 155, 506
CviJI	RGCY	9 cut(s)	38, 137, 172, 298, 340, 398, 488, 529, 595
CviKI_1	RGCY	9 cut(s)	38, 137, 172, 298, 340, 398, 488, 529, 595
CviQI	GTAC	2 cut(s)	109, 460
DpnI	GATC	4 cut(s)	144, 479, 495, 578
DpnII	GATC	4 cut(s)	142, 477, 493, 576
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	249
FaeI	CATG	3 cut(s)	9, 158, 509
FaiI	YATR	8 cut(s)	7, 117, 156, 284, 468, 507, 600, 602
FatI	CATG	3 cut(s)	5, 154, 505
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	135, 219, 486
FokI	GGATG	2 cut(s)	305, 356
Fsp4HI	GCNGC	3 cut(s)	135, 219, 486
FspBI	CTAG	2 cut(s)	215, 366
GluI	GCNGC	3 cut(s)	135, 219, 486
HapII	CCGG	2 cut(s)	151, 438
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	3 cut(s)	9, 158, 509
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	4 cut(s)	83, 315, 535, 542
HpaII	CCGG	2 cut(s)	151, 438
Hpy166II	GTNNAC	3 cut(s)	47, 407, 503
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	5 cut(s)	98, 227, 449, 539, 580
Hpy8I	GTNNAC	3 cut(s)	47, 407, 503
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	7 cut(s)	51, 57, 113, 205, 411, 417, 464
HpyCH4V	TGCA	6 cut(s)	9, 25, 105, 307, 385, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 304, 522
Hsp92II	CATG	3 cut(s)	9, 158, 509
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
Kzo9I	GATC	4 cut(s)	142, 477, 493, 576
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	3 cut(s)	127, 295, 478
Lsp1109I	GCAGC	3 cut(s)	146, 230, 497
LweI	GCATC	3 cut(s)	109, 148, 460
MaeI	CTAG	2 cut(s)	215, 366
MaeIII	GTNAC	2 cut(s)	51, 411
MalI	GATC	4 cut(s)	144, 479, 495, 578
MboI	GATC	4 cut(s)	142, 477, 493, 576
MboII	GAAGA	6 cut(s)	242, 245, 248, 266, 269, 595
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	3 cut(s)	72, 279, 351
MlyI	GAGTC	1 cut(s)	536
MnlI	CCTC	5 cut(s)	23, 244, 352, 383, 570
MroNI	GCCGGC	1 cut(s)	150
MspI	CCGG	2 cut(s)	151, 438
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	107, 458
MwoI	GCNNNNNNNGC	3 cut(s)	275, 304, 522
NaeI	GCCGGC	1 cut(s)	152
NdeII	GATC	4 cut(s)	142, 477, 493, 576
NgoMIV	GCCGGC	1 cut(s)	150
NlaIII	CATG	3 cut(s)	9, 158, 509
NlaIV	GGNNCC	3 cut(s)	180, 297, 363
NmuCI	GTSAC	2 cut(s)	51, 411
NspI	RCATGY	1 cut(s)	509
PciI	ACATGT	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	2 cut(s)	107, 458
PdiI	GCCGGC	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	83, 315, 535
PkrI	GCNGC	3 cut(s)	136, 220, 487
Ple19I	CGATCG	1 cut(s)	480
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
PscI	ACATGT	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	180, 297, 363
PstNI	CAGNNNCTG	2 cut(s)	55, 415
PvuI	CGATCG	1 cut(s)	480
RsaI	GTAC	2 cut(s)	110, 461
RsaNI	GTAC	2 cut(s)	109, 460
SapI	GCTCTTC	1 cut(s)	252
SatI	GCNGC	3 cut(s)	135, 219, 486
Sau3AI	GATC	4 cut(s)	142, 477, 493, 576
ScaI	AGTACT	2 cut(s)	110, 461
SchI	GAGTC	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	3 cut(s)	109, 148, 460
SfcI	CTRYAG	3 cut(s)	39, 173, 399
Sse9I	AATT	3 cut(s)	72, 279, 351
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	215, 366
TaaI	ACNGT	7 cut(s)	51, 57, 113, 205, 411, 417, 464
TaqI	TCGA	5 cut(s)	97, 129, 448, 480, 568
TasI	AATT	3 cut(s)	72, 279, 351
TatI	WGTACW	2 cut(s)	108, 459
TfiI	GAWTC	3 cut(s)	83, 315, 535
TscAI	CASTG	2 cut(s)	60, 420
TseFI	GTSAC	2 cut(s)	51, 411
TseI	GCWGC	3 cut(s)	134, 218, 485
Tsp45I	GTSAC	2 cut(s)	51, 411
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	60, 420
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	1 cut(s)	509
XspI	CTAG	2 cut(s)	215, 366
ZrmI	AGTACT	2 cut(s)	110, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.