SWI SNF family DNA-dependent ATPase Ris1
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830 |
| malus_domestica | MD12G1228100.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381 |
| rosa_laevigata | RLG00000001612 RLG00000025524 |
| rosa_multiflora | Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340 |
| rosa_rugosa | Rorug02G0648100 Rorug02G0648200 Rorug02G0648300 |
| rosa_samantha | Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000 |
| rosa_wichuraiana | Rw0G005410 Rw3G003870 Rw3G003890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 343 |
| AciI | CCGC | 2 cut(s) | 343, 359 |
| AclWI | GGATC | 1 cut(s) | 449 |
| AcsI | RAATTY | 1 cut(s) | 172 |
| AfaI | GTAC | 3 cut(s) | 201, 273, 586 |
| AfeI | AGCGCT | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 386 |
| AgsI | TTSAA | 1 cut(s) | 513 |
| AhlI | ACTAGT | 1 cut(s) | 587 |
| AleI | CACNNNNGTG | 1 cut(s) | 623 |
| AluBI | AGCT | 6 cut(s) | 25, 194, 312, 318, 384, 549 |
| AluI | AGCT | 6 cut(s) | 25, 194, 312, 318, 384, 549 |
| Alw21I | GWGCWC | 1 cut(s) | 314 |
| AlwI | GGATC | 1 cut(s) | 449 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 184 |
| Ama87I | CYCGRG | 1 cut(s) | 301 |
| Aor51HI | AGCGCT | 1 cut(s) | 127 |
| AoxI | GGCC | 1 cut(s) | 366 |
| ApeKI | GCWGC | 3 cut(s) | 48, 51, 549 |
| ApoI | RAATTY | 1 cut(s) | 172 |
| AspLEI | GCGC | 1 cut(s) | 128 |
| AspS9I | GGNCC | 1 cut(s) | 366 |
| AsuHPI | GGTGA | 2 cut(s) | 401, 610 |
| AvaI | CYCGRG | 1 cut(s) | 301 |
| BanII | GRGCYC | 1 cut(s) | 314 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 412, 415, 444, 447 |
| Bbv12I | GWGCWC | 1 cut(s) | 314 |
| BbvI | GCAGC | 3 cut(s) | 35, 63, 536 |
| BccI | CCATC | 1 cut(s) | 196 |
| BcuI | ACTAGT | 1 cut(s) | 587 |
| BfaI | CTAG | 4 cut(s) | 123, 315, 381, 588 |
| BfmI | CTRYAG | 3 cut(s) | 49, 67, 111 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BisI | GCNGC | 4 cut(s) | 49, 52, 344, 550 |
| BlsI | GCNGC | 4 cut(s) | 50, 53, 345, 551 |
| BmcAI | AGTACT | 2 cut(s) | 201, 586 |
| BmeT110I | CYCGRG | 1 cut(s) | 301 |
| BmgT120I | GGNCC | 1 cut(s) | 366 |
| BmsI | GCATC | 1 cut(s) | 332 |
| BpmI | CTGGAG | 1 cut(s) | 180 |
| Bsa29I | ATCGAT | 1 cut(s) | 243 |
| BsaBI | GATNNNNATC | 1 cut(s) | 459 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 386 |
| Bse1I | ACTGG | 1 cut(s) | 197 |
| Bse8I | GATNNNNATC | 1 cut(s) | 459 |
| BseCI | ATCGAT | 1 cut(s) | 243 |
| BseGI | GGATG | 2 cut(s) | 323, 491 |
| BseJI | GATNNNNATC | 1 cut(s) | 459 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 386 |
| BseMII | CTCAG | 2 cut(s) | 402, 419 |
| BseNI | ACTGG | 1 cut(s) | 197 |
| BseRI | GAGGAG | 1 cut(s) | 646 |
| BseXI | GCAGC | 3 cut(s) | 35, 63, 536 |
| BseYI | CCCAGC | 1 cut(s) | 441 |
| BshFI | GGCC | 1 cut(s) | 368 |
| BshVI | ATCGAT | 1 cut(s) | 243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 314 |
| BsiHKCI | CYCGRG | 1 cut(s) | 301 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 386 |
| BsnI | GGCC | 1 cut(s) | 368 |
| BsoBI | CYCGRG | 1 cut(s) | 301 |
| Bsp1286I | GDGCHC | 1 cut(s) | 314 |
| Bsp143I | GATC | 4 cut(s) | 35, 157, 240, 454 |
| BspACI | CCGC | 2 cut(s) | 343, 359 |
| BspANI | GGCC | 1 cut(s) | 368 |
| BspCNI | CTCAG | 2 cut(s) | 403, 418 |
| BspDI | ATCGAT | 1 cut(s) | 243 |
| BspHI | TCATGA | 1 cut(s) | 574 |
| BspMAI | CTGCAG | 2 cut(s) | 53, 115 |
| BspPI | GGATC | 1 cut(s) | 449 |
| BspQI | GCTCTTC | 1 cut(s) | 333 |
| BsrBI | CCGCTC | 1 cut(s) | 343 |
| BsrI | ACTGG | 1 cut(s) | 197 |
| BssMI | GATC | 4 cut(s) | 35, 157, 240, 454 |
| Bst4CI | ACNGT | 1 cut(s) | 71 |
| Bst6I | CTCTTC | 3 cut(s) | 225, 333, 433 |
| BstC8I | GCNNGC | 1 cut(s) | 519 |
| BstDEI | CTNAG | 2 cut(s) | 405, 411 |
| BstF5I | GGATG | 2 cut(s) | 323, 491 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 1 cut(s) | 128 |
| BstKTI | GATC | 4 cut(s) | 38, 160, 243, 457 |
| BstMBI | GATC | 4 cut(s) | 35, 157, 240, 454 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 257, 365 |
| BstNSI | RCATGY | 1 cut(s) | 545 |
| BstSFI | CTRYAG | 3 cut(s) | 49, 67, 111 |
| BstV1I | GCAGC | 3 cut(s) | 35, 63, 536 |
| BstX2I | RGATCY | 1 cut(s) | 454 |
| BstYI | RGATCY | 1 cut(s) | 454 |
| Bsu15I | ATCGAT | 1 cut(s) | 243 |
| BsuRI | GGCC | 1 cut(s) | 368 |
| BsuTUI | ATCGAT | 1 cut(s) | 243 |
| BtsCI | GGATG | 2 cut(s) | 323, 491 |
| BtsI | GCAGTG | 1 cut(s) | 165 |
| BtsIMutI | CAGTG | 2 cut(s) | 165, 475 |
| Cac8I | GCNNGC | 1 cut(s) | 519 |
| CaiI | CAGNNNCTG | 1 cut(s) | 184 |
| CciI | TCATGA | 1 cut(s) | 574 |
| CfoI | GCGC | 1 cut(s) | 128 |
| Cfr13I | GGNCC | 1 cut(s) | 366 |
| ClaI | ATCGAT | 1 cut(s) | 243 |
| Csp6I | GTAC | 3 cut(s) | 200, 272, 585 |
| CviAII | CATG | 3 cut(s) | 62, 542, 575 |
| CviQI | GTAC | 3 cut(s) | 200, 272, 585 |
| DdeI | CTNAG | 2 cut(s) | 405, 411 |
| DpnI | GATC | 4 cut(s) | 37, 159, 242, 456 |
| DpnII | GATC | 4 cut(s) | 35, 157, 240, 454 |
| Eam1104I | CTCTTC | 3 cut(s) | 225, 333, 433 |
| EarI | CTCTTC | 3 cut(s) | 225, 333, 433 |
| Ecl136II | GAGCTC | 1 cut(s) | 312 |
| Eco24I | GRGCYC | 1 cut(s) | 314 |
| Eco47III | AGCGCT | 1 cut(s) | 127 |
| Eco53kI | GAGCTC | 1 cut(s) | 312 |
| Eco88I | CYCGRG | 1 cut(s) | 301 |
| EcoICRI | GAGCTC | 1 cut(s) | 312 |
| EcoT38I | GRGCYC | 1 cut(s) | 314 |
| FaeI | CATG | 3 cut(s) | 65, 545, 578 |
| FatI | CATG | 3 cut(s) | 61, 541, 574 |
| Fnu4HI | GCNGC | 4 cut(s) | 49, 52, 344, 550 |
| FokI | GGATG | 2 cut(s) | 310, 498 |
| FriOI | GRGCYC | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 4 cut(s) | 49, 52, 344, 550 |
| FspBI | CTAG | 4 cut(s) | 123, 315, 381, 588 |
| GlaI | GCGC | 1 cut(s) | 127 |
| GluI | GCNGC | 4 cut(s) | 49, 52, 344, 550 |
| GsaI | CCCAGC | 1 cut(s) | 445 |
| GsuI | CTGGAG | 1 cut(s) | 180 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HaeIII | GGCC | 1 cut(s) | 368 |
| HhaI | GCGC | 1 cut(s) | 128 |
| Hin1II | CATG | 3 cut(s) | 65, 545, 578 |
| Hin6I | GCGC | 1 cut(s) | 126 |
| HinP1I | GCGC | 1 cut(s) | 126 |
| HinfI | GANTC | 2 cut(s) | 290, 571 |
| HphI | GGTGA | 2 cut(s) | 401, 610 |
| Hpy188I | TCNGA | 5 cut(s) | 40, 151, 328, 375, 412 |
| Hpy188III | TCNNGA | 4 cut(s) | 74, 161, 266, 575 |
| HpyCH4III | ACNGT | 1 cut(s) | 71 |
| HpyCH4V | TGCA | 5 cut(s) | 51, 113, 170, 323, 565 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 257, 365 |
| HpyF3I | CTNAG | 2 cut(s) | 405, 411 |
| Hsp92II | CATG | 3 cut(s) | 65, 545, 578 |
| HspAI | GCGC | 1 cut(s) | 126 |
| Kzo9I | GATC | 4 cut(s) | 35, 157, 240, 454 |
| LguI | GCTCTTC | 1 cut(s) | 333 |
| LmnI | GCTCC | 2 cut(s) | 199, 611 |
| LpnPI | CCDG | 7 cut(s) | 168, 197, 210, 251, 455, 531, 547 |
| Lsp1109I | GCAGC | 3 cut(s) | 35, 63, 536 |
| LweI | GCATC | 1 cut(s) | 332 |
| MaeI | CTAG | 4 cut(s) | 123, 315, 381, 588 |
| MaeIII | GTNAC | 3 cut(s) | 161, 497, 527 |
| MalI | GATC | 4 cut(s) | 37, 159, 242, 456 |
| MbiI | CCGCTC | 1 cut(s) | 343 |
| MboI | GATC | 4 cut(s) | 35, 157, 240, 454 |
| MflI | RGATCY | 1 cut(s) | 454 |
| MhlI | GDGCHC | 1 cut(s) | 314 |
| MluCI | AATT | 2 cut(s) | 172, 476 |
| MnlI | CCTC | 7 cut(s) | 25, 310, 379, 476, 609, 624, 627 |
| MslI | CAYNNNNRTG | 3 cut(s) | 468, 512, 623 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 257, 365 |
| NdeII | GATC | 4 cut(s) | 35, 157, 240, 454 |
| NlaIII | CATG | 3 cut(s) | 65, 545, 578 |
| NmuCI | GTSAC | 2 cut(s) | 161, 527 |
| NspI | RCATGY | 1 cut(s) | 545 |
| OliI | CACNNNNGTG | 1 cut(s) | 623 |
| PaeR7I | CTCGAG | 1 cut(s) | 301 |
| PagI | TCATGA | 1 cut(s) | 574 |
| PciSI | GCTCTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 2 cut(s) | 290, 571 |
| PkrI | GCNGC | 4 cut(s) | 50, 53, 345, 551 |
| Psp124BI | GAGCTC | 1 cut(s) | 314 |
| PspFI | CCCAGC | 1 cut(s) | 441 |
| PspPI | GGNCC | 1 cut(s) | 366 |
| PspXI | VCTCGAGB | 1 cut(s) | 301 |
| PstI | CTGCAG | 2 cut(s) | 53, 115 |
| PstNI | CAGNNNCTG | 1 cut(s) | 184 |
| PsuI | RGATCY | 1 cut(s) | 454 |
| RsaI | GTAC | 3 cut(s) | 201, 273, 586 |
| RsaNI | GTAC | 3 cut(s) | 200, 272, 585 |
| RseI | CAYNNNNRTG | 3 cut(s) | 468, 512, 623 |
| SacI | GAGCTC | 1 cut(s) | 314 |
| SapI | GCTCTTC | 1 cut(s) | 333 |
| SatI | GCNGC | 4 cut(s) | 49, 52, 344, 550 |
| Sau3AI | GATC | 4 cut(s) | 35, 157, 240, 454 |
| Sau96I | GGNCC | 1 cut(s) | 366 |
| ScaI | AGTACT | 2 cut(s) | 201, 586 |
| SduI | GDGCHC | 1 cut(s) | 314 |
| SfaNI | GCATC | 1 cut(s) | 332 |
| SfcI | CTRYAG | 3 cut(s) | 49, 67, 111 |
| Sfr274I | CTCGAG | 1 cut(s) | 301 |
| SlaI | CTCGAG | 1 cut(s) | 301 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 468, 512, 623 |
| SmlI | CTYRAG | 1 cut(s) | 301 |
| SmoI | CTYRAG | 1 cut(s) | 301 |
| SpeI | ACTAGT | 1 cut(s) | 587 |
| Sse9I | AATT | 2 cut(s) | 172, 476 |
| SsiI | CCGC | 2 cut(s) | 343, 359 |
| SspMI | CTAG | 4 cut(s) | 123, 315, 381, 588 |
| SstI | GAGCTC | 1 cut(s) | 314 |
| TaaI | ACNGT | 1 cut(s) | 71 |
| TaqI | TCGA | 5 cut(s) | 17, 29, 96, 243, 302 |
| TasI | AATT | 2 cut(s) | 172, 476 |
| TatI | WGTACW | 2 cut(s) | 199, 584 |
| TauI | GCSGC | 1 cut(s) | 346 |
| TfiI | GAWTC | 2 cut(s) | 290, 571 |
| TscAI | CASTG | 2 cut(s) | 172, 475 |
| TseFI | GTSAC | 2 cut(s) | 161, 527 |
| TseI | GCWGC | 3 cut(s) | 48, 51, 549 |
| Tsp45I | GTSAC | 2 cut(s) | 161, 527 |
| TspDTI | ATGAA | 5 cut(s) | 132, 201, 240, 465, 563 |
| TspGWI | ACGGA | 1 cut(s) | 583 |
| TspRI | CASTG | 2 cut(s) | 172, 475 |
| XapI | RAATTY | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 545 |
| XhoI | CTCGAG | 1 cut(s) | 301 |
| XspI | CTAG | 4 cut(s) | 123, 315, 381, 588 |
| ZrmI | AGTACT | 2 cut(s) | 201, 586 |