Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

18221130 .. 18223398

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATCAAAACCTCGCCGCGCAATGTCATGGTCAAGACACTTCCTTTCTTGACCCGCTCCCCAGGATAAGCAATGAGCATTCAAAGCTTGATGACGAAGCTCTTCCAGAGGCTCACCACTTGAAACTGAAACTCGCCGCTCCTATAGTTCTTGTCTGTTCTAGCTTTGCACTTTCGACATCAATTTTAGCCTCAGGGGCCGAAACGCTGCCATTTTTGACGAGGTCGGCGTCAGAAAGGGTGAGGCAGAGTGGTCGAAGGTGGGGATGGAGGCGGTGGAGGTGGAGCTTTATGCAGAGATCCCCTCGCACTCCAGACCATACTTCTGGAGTTTGCAGTCTTACCGGAAATGGTAACCCTGACAGTGAAGGAGGCCGTCGCGTTTCTCGAGTAAAGCTTAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.11

Weight (kDa)

10.04

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	58, 140
AccII	CGCG	2 cut(s)	20, 381
AciI	CCGC	4 cut(s)	18, 56, 138, 274
AclWI	GGATC	2 cut(s)	12, 294
AcyI	GRCGYC	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	84, 124
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	88, 101, 165, 288, 397
AluI	AGCT	5 cut(s)	88, 101, 165, 288, 397
AlwI	GGATC	2 cut(s)	12, 294
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	2 cut(s)	198, 373
ApeKI	GCWGC	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	107, 253
AvaI	CYCGRG	1 cut(s)	387
AxyI	CCTNAGG	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	360
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	3 cut(s)	18, 138, 209
BlsI	GCNGC	3 cut(s)	19, 139, 210
Bme1390I	CCNGG	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	2 cut(s)	297, 348
Bpu10I	CCTNAGC	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	344
Bse21I	CCTNAGG	1 cut(s)	193
Bse3DI	GCAATG	2 cut(s)	29, 79
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	272
BseMI	GCAATG	2 cut(s)	29, 79
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	195
Bsh1236I	CGCG	2 cut(s)	20, 381
BshFI	GGCC	2 cut(s)	200, 375
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	200, 375
BsoBI	CYCGRG	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	4, 299
BspACI	CCGC	4 cut(s)	18, 56, 138, 274
BspANI	GGCC	2 cut(s)	200, 375
BspCNI	CTCAG	1 cut(s)	206
BspFNI	CGCG	2 cut(s)	20, 381
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	12, 294
BspQI	GCTCTTC	1 cut(s)	108
BsrBI	CCGCTC	2 cut(s)	58, 140
BsrDI	GCAATG	2 cut(s)	29, 79
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	4, 299
BssNI	GRCGYC	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	193, 398
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	2 cut(s)	20, 381
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	7, 302
BstMBI	GATC	2 cut(s)	4, 299
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 197
BstNI	CCWGG	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	2 cut(s)	20, 381
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	299
Bsu36I	CCTNAGG	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	200, 375
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	198
CseI	GACGC	1 cut(s)	219
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	9 cut(s)	88, 101, 113, 165, 191, 200, 288, 375, 397
CviKI_1	RGCY	9 cut(s)	88, 101, 113, 165, 191, 200, 288, 375, 397
DdeI	CTNAG	2 cut(s)	193, 398
DpnI	GATC	2 cut(s)	6, 301
DpnII	GATC	2 cut(s)	4, 299
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	62
FaeI	CATG	1 cut(s)	32
FaiI	YATR	4 cut(s)	30, 146, 293, 321
FatI	CATG	1 cut(s)	28
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	18, 138, 209
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	3 cut(s)	18, 138, 209
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	18, 138, 209
GsuI	CTGGAG	2 cut(s)	297, 348
HaeIII	GGCC	2 cut(s)	200, 375
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HindIII	AAGCTT	2 cut(s)	86, 395
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	107, 253
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	6 cut(s)	35, 50, 107, 314, 327, 387
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	2 cut(s)	252, 362
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	170, 295, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 197
HpyF3I	CTNAG	2 cut(s)	193, 398
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	4, 299
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	63, 145, 285
LpnPI	CCDG	8 cut(s)	49, 76, 120, 180, 312, 327, 358, 372
Lsp1109I	GCAGC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	6, 301
MbiI	CCGCTC	2 cut(s)	58, 140
MboI	GATC	2 cut(s)	4, 299
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	9 cut(s)	23, 103, 202, 216, 237, 264, 273, 315, 365
MroXI	GAANNNNTTC	1 cut(s)	102
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	20, 381
MwoI	GCNNNNNNNGC	2 cut(s)	85, 197
NdeII	GATC	2 cut(s)	4, 299
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 385
PctI	GAATGC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	19, 139, 210
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	299
PsyI	GACNNNGTC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	3 cut(s)	18, 138, 209
Sau3AI	GATC	2 cut(s)	4, 299
Sau96I	GGNCC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	387
SlaI	CTCGAG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	4 cut(s)	18, 56, 138, 274
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	365
TaqI	TCGA	3 cut(s)	176, 256, 388
TasI	AATT	1 cut(s)	183
TauI	GCSGC	2 cut(s)	20, 140
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	1 cut(s)	208
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.