Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

3611294 .. 3618692

Gene Structure 7399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGAGGTTGTTTTTCCGACGTGAAAGGTGGCAAACAGGCCGTGGGAGGTGGGGCCCAAGAGAGGCCCATCATCAACAGGGACGCTGACACAAACGACGCCGTTGAGCTCTTTAACCGCTCCCGAGGGGTTTATCCTCTCTACACTCGGCTCGAGGCGAGGTTGGCATCAGAAAGGATGAGGCAGAGTGGTCGAAGGTGGGGATGGAGGCGGTGGAGGTGTAGCTTCGTGCAGAGATCCCCTCGCACTCCAAACCATACTTCTGGAGTTTGCAGTCTTACCAGAAATGGTAACCCTGACAGTGAAGGAGGCCGTTGCGTTTCTCGAGGTGAGATGGGTTGGCTTCTTCTTGATCCAAACTGGTGGGTTTCCATTAGATTACGTCTGCTCATCCATTGGATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

135

Amino Acids

15.39

Weight (kDa)

10.91

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	2 cut(s)	118, 211
AclWI	GGATC	2 cut(s)	231, 347
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	63
AjiI	CACGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	3 cut(s)	109, 225, 404
AluI	AGCT	3 cut(s)	109, 225, 404
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	231, 347
Ama87I	CYCGRG	3 cut(s)	123, 152, 324
AoxI	GGCC	4 cut(s)	39, 54, 65, 310
ApaI	GGGCCC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	54, 55, 66
AsuHPI	GGTGA	1 cut(s)	341
AvaI	CYCGRG	3 cut(s)	123, 152, 324
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	58, 111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	3 cut(s)	77, 198, 328
BceAI	ACGGC	3 cut(s)	26, 86, 297
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BmeT110I	CYCGRG	3 cut(s)	123, 152, 324
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	54, 55, 66
BmiI	GGNNCC	2 cut(s)	55, 56
BmsI	GCATC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	42, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	42, 124
BseGI	GGATG	3 cut(s)	183, 209, 390
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	4 cut(s)	41, 56, 67, 312
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	3 cut(s)	123, 152, 324
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	4 cut(s)	41, 56, 67, 312
BsoBI	CYCGRG	3 cut(s)	123, 152, 324
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	58, 111
Bsp143I	GATC	2 cut(s)	236, 352
BspACI	CCGC	2 cut(s)	118, 211
BspANI	GGCC	4 cut(s)	41, 56, 67, 312
BspLI	GGNNCC	2 cut(s)	55, 56
BspPI	GGATC	2 cut(s)	231, 347
BsrBI	CCGCTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	42, 124
BssMI	GATC	2 cut(s)	236, 352
BssNI	GRCGYC	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	183, 209, 390
BstKTI	GATC	2 cut(s)	239, 355
BstMBI	GATC	2 cut(s)	236, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	236
BstXI	CCANNNNNNTGG	2 cut(s)	263, 363
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	4 cut(s)	41, 56, 67, 312
BtgI	CCRYGG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	183, 209, 390
BtsIMutI	CAGTG	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	54, 55, 66
CseI	GACGC	2 cut(s)	92, 107
CviJI	RGCY	9 cut(s)	41, 56, 67, 109, 151, 225, 312, 343, 404
CviKI_1	RGCY	9 cut(s)	41, 56, 67, 109, 151, 225, 312, 343, 404
DpnI	GATC	2 cut(s)	238, 354
DpnII	GATC	2 cut(s)	236, 352
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	2 cut(s)	58, 111
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	3 cut(s)	123, 152, 324
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	54
EcoO65I	GGTNACC	1 cut(s)	290
EcoT38I	GRGCYC	2 cut(s)	58, 111
FaiI	YATR	1 cut(s)	258
FaqI	GGGAC	1 cut(s)	95
FokI	GGATG	3 cut(s)	190, 216, 377
FriOI	GRGCYC	2 cut(s)	58, 111
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	4 cut(s)	41, 56, 67, 312
HgaI	GACGC	2 cut(s)	92, 107
Hin1I	GRCGYC	1 cut(s)	99
HphI	GGTGA	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	19, 172
Hpy188III	TCNNGA	4 cut(s)	123, 264, 324, 350
Hpy99I	CGWCG	2 cut(s)	23, 101
HpyAV	CCTTC	2 cut(s)	189, 299
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	21, 382
HpyCH4V	TGCA	2 cut(s)	232, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	21, 382
Hsp92I	GRCGYC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	236, 352
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	23, 64, 249, 295, 309, 346
LweI	GCATC	1 cut(s)	176
MaeII	ACGT	2 cut(s)	21, 382
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	2 cut(s)	238, 354
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	2 cut(s)	236, 352
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	2 cut(s)	58, 111
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	2 cut(s)	236, 352
NlaIV	GGNNCC	2 cut(s)	55, 56
NmeAIII	GCCGAG	1 cut(s)	127
PaeR7I	CTCGAG	2 cut(s)	152, 324
Psp124BI	GAGCTC	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	55, 56
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	3 cut(s)	54, 55, 66
PspXI	VCTCGAGB	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	236, 352
Sau96I	GGNCC	3 cut(s)	54, 55, 66
SduI	GDGCHC	2 cut(s)	58, 111
SfaNI	GCATC	1 cut(s)	176
Sfr274I	CTCGAG	2 cut(s)	152, 324
SlaI	CTCGAG	2 cut(s)	152, 324
SmlI	CTYRAG	2 cut(s)	152, 324
SmoI	CTYRAG	2 cut(s)	152, 324
SsiI	CCGC	2 cut(s)	118, 211
SstI	GAGCTC	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	24, 385
TaqI	TCGA	3 cut(s)	153, 193, 325
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	307
TspRI	CASTG	1 cut(s)	307
XhoI	CTCGAG	2 cut(s)	152, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.