Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Reverse (-)

3332800 .. 3334601

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCAAGATATACAAGATTTTTTGATGGTCAGTGCTTTGATGGAGTGAGGACGGTTGATCAGTTCAAAGCACTGGAAAGATATCTGAAAGCCGACAATAATGCCAATCGCTACTGTGGTATTTGTGGAGGTACTCTCTTGCAATGTGCCGTCCGAAACAGGCAAGTGGATGTTGTTCGTCTACTTCTTTCTAGTGGAGCTGATATCTTCAAGACTAATGATGGACATCTTCCTCTCGACATTGCTAAGGAAGAAGGGTACCACACAATTGTCCGTTTATTTGAGGATCATCTCTTTGCTGAAAATGAAATCCGGCGGTTGGTTATGGCGAATAGAGCTTCGCTGGACCTTGCACATTTGCCCAGCAGTTCGTTTTCTTCCAAGCCAAGTCATGCTGCAGATTCACATGTGCTGCCATCTGCTCAACCACTACCACCACAGGTAGTGGTGTTGGAGGAAGTATCAAACTTCCATGAGGCATCTTCCAGATTGAGCAGAAGCTCTAGCTATATTCCAGAATGGTCAGATTACTGGGGCAGACCAACTCCAGATGCACCTAACAGTTTTACTTCTTCTGTGCCAAGTCATGGTGAAGGTTCACAGCCACTACCATCTCCACCACTAACTGTTCCACCACTAGCAGCACTTCCTGAAGAAGTAGACACCAATGATGAGGAAGAAGAGCGTCAAGTGGCTATGGCAATTATGGTCTCTTTGGAGCCTGATTTGCAAGAAGGAATCATCCCACAATGGTCATTTTGGCTGGATGAACCAATTGGAGAGGCATCTAGCAGTTCTACACCTTTGCAACGAGGTCAAGCTACAGGTTCACAGTCACTGTCATCTGCTCAACAAATTCCAAATGATTCCAGTAGCAGTCGAGAATGCAAGTACTGTTATGATGCTCCAATCGAAGCAGCTTGTGATCCCTGCGGGCATGATGCTTGCTTCAAGCTACAGGTTCCACTACCATCTCCACCACTAACTGTTCCACCACTAGCAGCACTTCCTGAAGAAGAAGACACCAATGATGAGGAAGAAGAGCGTCAAGTGGCTATGGCAATTATGGTCTCTTTCGAGCCTGATTTGCAAGAAGGAATCATCCCACAATGGTCATTTTGGCTGGATGAACCAATTGGAGAGGCACCTAGCAGTTCTACACCTTTGCAACGAGGTCAAGCTACAGGTTCACAGTCACTGTCATCTGCTCAACAACATTCCGGTAGCAGTCGAGAATGCGAGTACTGTTATGATGCTCCGATCGAAGCAGCTTGTGATCCCTGTGGACATGTTGCTTGCTTCAACTGCTGGCTAAAGATTCAGGACTCTGCAAACAAGTGCCCTCTTTGTCGAGTAGAGATCAAGAAGATTATCAAGCTTTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

462

Amino Acids

50.83

Weight (kDa)

4.62

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	24 - 94	4.4e-07	Ankyrin repeats (3 copies)
zf-C3HC4_3	PF13920	410 - 456	5.8e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	258, 1144
AccB7I	CCANNNNNTGG	1 cut(s)	587
AccI	GTMKAC	2 cut(s)	181, 660
AciI	CCGC	2 cut(s)	316, 933
AclWI	GGATC	3 cut(s)	294, 920, 1271
AcsI	RAATTY	1 cut(s)	855
AcuI	CTGAAG	2 cut(s)	672, 1032
AfaI	GTAC	4 cut(s)	133, 260, 893, 1244
AfiI	CCNNNNNNNGG	2 cut(s)	319, 587
AflIII	ACRYGT	2 cut(s)	406, 1288
AgsI	TTSAA	4 cut(s)	67, 211, 952, 1303
Alw26I	GTCTC	2 cut(s)	715, 1075
AlwI	GGATC	3 cut(s)	294, 920, 1271
AlwNI	CAGNNNCTG	2 cut(s)	838, 1198
ApeKI	GCWGC	6 cut(s)	395, 412, 641, 917, 1001, 1268
ApoI	RAATTY	1 cut(s)	855
Asp718I	GGTACC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	1343
BanI	GGYRCC	2 cut(s)	258, 1144
BbsI	GAAGAC	1 cut(s)	1026
BbvI	GCAGC	6 cut(s)	382, 399, 653, 929, 1013, 1280
BccI	CCATC	6 cut(s)	20, 35, 215, 424, 619, 979
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	715, 1075
BfaI	CTAG	6 cut(s)	192, 504, 638, 789, 998, 1149
BfmI	CTRYAG	4 cut(s)	396, 822, 956, 1182
BisI	GCNGC	6 cut(s)	396, 413, 642, 918, 1002, 1269
BlsI	GCNGC	6 cut(s)	397, 414, 643, 919, 1003, 1270
BmcAI	AGTACT	2 cut(s)	893, 1244
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	4 cut(s)	260, 720, 963, 1146
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	6 cut(s)	488, 541, 794, 892, 931, 1243
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	1026
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	2 cut(s)	715, 1075
BsaWI	WCCGGW	1 cut(s)	1220
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 587
Bse1I	ACTGG	3 cut(s)	78, 536, 870
Bse3DI	GCAATG	2 cut(s)	149, 240
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	5 cut(s)	175, 741, 772, 1101, 1132
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	319, 587
BseMI	GCAATG	2 cut(s)	149, 240
BseNI	ACTGG	3 cut(s)	78, 536, 870
BseSI	GKGCMC	1 cut(s)	1343
BseXI	GCAGC	6 cut(s)	382, 399, 653, 929, 1013, 1280
BseYI	CCCAGC	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	1263
BshNI	GGYRCC	2 cut(s)	258, 1144
BsiEI	CGRYCG	1 cut(s)	1263
BsiSI	CCGG	2 cut(s)	313, 1221
BslI	CCNNNNNNNGG	2 cut(s)	319, 587
BsmAI	GTCTC	2 cut(s)	715, 1075
BsmI	GAATGC	2 cut(s)	890, 1241
Bso31I	GGTCTC	2 cut(s)	715, 1075
Bsp1286I	GDGCHC	1 cut(s)	1343
Bsp143I	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
BspACI	CCGC	2 cut(s)	316, 933
BspLI	GGNNCC	4 cut(s)	260, 720, 963, 1146
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	3 cut(s)	294, 920, 1271
BspQI	GCTCTTC	2 cut(s)	675, 1035
BspT107I	GGYRCC	2 cut(s)	258, 1144
BspTNI	GGTCTC	2 cut(s)	715, 1075
BsrDI	GCAATG	2 cut(s)	149, 240
BsrI	ACTGG	3 cut(s)	78, 536, 870
BssMI	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
Bst6I	CTCTTC	2 cut(s)	675, 1035
BstC8I	GCNNGC	4 cut(s)	935, 946, 1297, 1310
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	5 cut(s)	175, 741, 772, 1101, 1132
BstKTI	GATC	6 cut(s)	61, 289, 928, 1263, 1279, 1362
BstMAI	GTCTC	2 cut(s)	715, 1075
BstMBI	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
BstMCI	CGRYCG	1 cut(s)	1263
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 727, 1087, 1305
BstNSI	RCATGY	2 cut(s)	410, 1292
BstSFI	CTRYAG	4 cut(s)	396, 822, 956, 1182
BstSLI	GKGCMC	1 cut(s)	1343
BstV1I	GCAGC	6 cut(s)	382, 399, 653, 929, 1013, 1280
BstV2I	GAAGAC	1 cut(s)	1026
BtsCI	GGATG	5 cut(s)	175, 741, 772, 1101, 1132
BtsIMutI	CAGTG	4 cut(s)	38, 71, 836, 1196
Cac8I	GCNNGC	4 cut(s)	935, 946, 1297, 1310
CaiI	CAGNNNCTG	2 cut(s)	838, 1198
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	2 cut(s)	674, 1034
Csp6I	GTAC	4 cut(s)	132, 259, 892, 1243
CviAII	CATG	6 cut(s)	392, 407, 473, 587, 938, 1289
CviQI	GTAC	4 cut(s)	132, 259, 892, 1243
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	6 cut(s)	60, 288, 927, 1262, 1278, 1361
DpnII	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
Eam1104I	CTCTTC	2 cut(s)	675, 1035
EarI	CTCTTC	2 cut(s)	675, 1035
Eco31I	GGTCTC	2 cut(s)	715, 1075
Eco32I	GATATC	2 cut(s)	83, 205
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	672, 1032
EcoRV	GATATC	2 cut(s)	83, 205
FaeI	CATG	6 cut(s)	395, 410, 476, 590, 941, 1292
FatI	CATG	6 cut(s)	391, 406, 472, 586, 937, 1288
FauI	CCCGC	1 cut(s)	926
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	2 cut(s)	181, 660
Fnu4HI	GCNGC	6 cut(s)	396, 413, 642, 918, 1002, 1269
FokI	GGATG	5 cut(s)	182, 728, 779, 1088, 1139
Fsp4HI	GCNGC	6 cut(s)	396, 413, 642, 918, 1002, 1269
FspBI	CTAG	6 cut(s)	192, 504, 638, 789, 998, 1149
GluI	GCNGC	6 cut(s)	396, 413, 642, 918, 1002, 1269
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	531
HapII	CCGG	2 cut(s)	313, 1221
HgaI	GACGC	2 cut(s)	674, 1034
Hin1II	CATG	6 cut(s)	395, 410, 476, 590, 941, 1292
HindIII	AAGCTT	1 cut(s)	1376
HinfI	GANTC	6 cut(s)	401, 738, 866, 1098, 1318, 1325
HpaII	CCGG	2 cut(s)	313, 1221
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	6 cut(s)	182, 599, 661, 830, 1190, 1286
Hpy188I	TCNGA	4 cut(s)	87, 155, 526, 1260
Hpy8I	GTNNAC	6 cut(s)	182, 599, 661, 830, 1190, 1286
HpyAV	CCTTC	4 cut(s)	248, 587, 728, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 727, 1087, 1305
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	6 cut(s)	395, 410, 476, 590, 941, 1292
KpnI	GGTACC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
LguI	GCTCTTC	2 cut(s)	675, 1035
LmnI	GCTCC	4 cut(s)	197, 718, 910, 1261
Lsp1109I	GCAGC	6 cut(s)	382, 399, 653, 929, 1013, 1280
LweI	GCATC	6 cut(s)	488, 541, 794, 892, 931, 1243
MaeI	CTAG	6 cut(s)	192, 504, 638, 789, 998, 1149
MaeIII	GTNAC	2 cut(s)	834, 1194
MalI	GATC	6 cut(s)	60, 288, 927, 1262, 1278, 1361
MboI	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
MfeI	CAATTG	3 cut(s)	267, 774, 1134
MhlI	GDGCHC	1 cut(s)	1343
MluCI	AATT	6 cut(s)	267, 702, 774, 855, 1062, 1134
MlyI	GAGTC	1 cut(s)	1319
MmeI	TCCRAC	1 cut(s)	432
MspI	CCGG	2 cut(s)	313, 1221
MunI	CAATTG	3 cut(s)	267, 774, 1134
Mva1269I	GAATGC	2 cut(s)	890, 1241
MwoI	GCNNNNNNNGC	4 cut(s)	335, 727, 1087, 1305
NdeII	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
NlaIII	CATG	6 cut(s)	395, 410, 476, 590, 941, 1292
NlaIV	GGNNCC	4 cut(s)	260, 720, 963, 1146
NmuCI	GTSAC	2 cut(s)	834, 1194
NspI	RCATGY	2 cut(s)	410, 1292
PciI	ACATGT	2 cut(s)	406, 1288
PciSI	GCTCTTC	2 cut(s)	675, 1035
PctI	GAATGC	2 cut(s)	890, 1241
PfeI	GAWTC	5 cut(s)	401, 738, 866, 1098, 1318
PflMI	CCANNNNNTGG	1 cut(s)	587
PkrI	GCNGC	6 cut(s)	397, 414, 643, 919, 1003, 1270
Ple19I	CGATCG	1 cut(s)	1263
PleI	GAGTC	1 cut(s)	1319
PpsI	GAGTC	1 cut(s)	1319
PscI	ACATGT	2 cut(s)	406, 1288
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	4 cut(s)	260, 720, 963, 1146
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	2 cut(s)	838, 1198
PvuI	CGATCG	1 cut(s)	1263
RsaI	GTAC	4 cut(s)	133, 260, 893, 1244
RsaNI	GTAC	4 cut(s)	132, 259, 892, 1243
SapI	GCTCTTC	2 cut(s)	675, 1035
SatI	GCNGC	6 cut(s)	396, 413, 642, 918, 1002, 1269
Sau3AI	GATC	6 cut(s)	58, 286, 925, 1260, 1276, 1359
Sau96I	GGNCC	1 cut(s)	346
ScaI	AGTACT	2 cut(s)	893, 1244
SchI	GAGTC	1 cut(s)	1319
SduI	GDGCHC	1 cut(s)	1343
SfaNI	GCATC	6 cut(s)	488, 541, 794, 892, 931, 1243
SfcI	CTRYAG	4 cut(s)	396, 822, 956, 1182
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	6 cut(s)	267, 702, 774, 855, 1062, 1134
SsiI	CCGC	2 cut(s)	316, 933
SspMI	CTAG	6 cut(s)	192, 504, 638, 789, 998, 1149
TaqI	TCGA	7 cut(s)	237, 880, 912, 1077, 1231, 1263, 1351
TasI	AATT	6 cut(s)	267, 702, 774, 855, 1062, 1134
TatI	WGTACW	2 cut(s)	891, 1242
TfiI	GAWTC	5 cut(s)	401, 738, 866, 1098, 1318
TscAI	CASTG	4 cut(s)	38, 78, 843, 1203
TseFI	GTSAC	2 cut(s)	834, 1194
TseI	GCWGC	6 cut(s)	395, 412, 641, 917, 1001, 1268
Tsp45I	GTSAC	2 cut(s)	834, 1194
TspDTI	ATGAA	3 cut(s)	321, 783, 1143
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	4 cut(s)	38, 78, 843, 1203
Van91I	CCANNNNNTGG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	855
XceI	RCATGY	2 cut(s)	410, 1292
XmiI	GTMKAC	2 cut(s)	181, 660
XspI	CTAG	6 cut(s)	192, 504, 638, 789, 998, 1149
ZrmI	AGTACT	2 cut(s)	893, 1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.