Rh3AG050900

BONZAI 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002274
Physical Location & Seq
Forward (+)
3558074 .. 3564703
6630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG050900.1

Sequence Viewer

Length: 303 bp
ATGGGAGGGTGTTTCTCCGACGTGAAAGGTGGCAAGCAGGCAGTGGGAGGGGCCCATCAACAACAGAGGCCGATCAACAAGGACGCTGACTCAAACGACGCCGTTGAGCTCTTTAACCGCTCTCGTGGGGTTTATCCTCTCTACACTCCGCTCGAGCTAACATGCAGCACAAACATAAATCAAAGTTCCAACTTCCAAGTTCCAGCTGCAGAAGGTGGTGGGGGAGGAAGCATAAGCGGTGCAGCAGCTTCACTTGTAGTAGTTGGTGTTGTTCCAGTGCTTGACCCAACTGGTGTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 Copine

Protein Analysis

100

Amino Acids

10.08

Weight (kDa)

5.04

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 120, 151
AciI CCGC 3 cut(s) 118, 149, 237
AcyI GRCGYC 1 cut(s) 99
AjiI CACGTC 1 cut(s) 22
AluBI AGCT 4 cut(s) 109, 157, 206, 248
AluI AGCT 4 cut(s) 109, 157, 206, 248
Alw21I GWGCWC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 2 cut(s) 51, 68
ApaI GGGCCC 1 cut(s) 55
ApeKI GCWGC 4 cut(s) 165, 206, 242, 245
AspS9I GGNCC 2 cut(s) 51, 52
AvaI CYCGRG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 55
BanII GRGCYC 2 cut(s) 55, 111
BauI CACGAG 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 4 cut(s) 177, 193, 254, 257
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 4 cut(s) 166, 207, 243, 246
BlsI GCNGC 4 cut(s) 167, 208, 244, 247
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 51, 52
BmiI GGNNCC 2 cut(s) 52, 53
BsaHI GRCGYC 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 275, 295
BseNI ACTGG 2 cut(s) 275, 295
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 4 cut(s) 177, 193, 254, 257
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 53, 70
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 152
BsnI GGCC 2 cut(s) 53, 70
BsoBI CYCGRG 1 cut(s) 152
Bsp120I GGGCCC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 55, 111
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 3 cut(s) 118, 149, 237
BspANI GGCC 2 cut(s) 53, 70
BspLI GGNNCC 2 cut(s) 52, 53
BspMAI CTGCAG 1 cut(s) 211
BsrBI CCGCTC 2 cut(s) 120, 151
BsrI ACTGG 2 cut(s) 275, 295
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 1 cut(s) 99
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 35, 39
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 4 cut(s) 177, 193, 254, 257
BsuRI GGCC 2 cut(s) 53, 70
BtrI CACGTC 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 282
Cac8I GCNNGC 2 cut(s) 35, 39
Cfr13I GGNCC 2 cut(s) 51, 52
CseI GACGC 2 cut(s) 92, 107
CviAII CATG 1 cut(s) 162
CviJI RGCY 6 cut(s) 53, 70, 109, 157, 206, 248
CviKI_1 RGCY 6 cut(s) 53, 70, 109, 157, 206, 248
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 55, 111
Eco53kI GAGCTC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 55, 111
FaeI CATG 1 cut(s) 165
FaiI YATR 4 cut(s) 163, 176, 233, 301
FatI CATG 1 cut(s) 161
Fnu4HI GCNGC 4 cut(s) 166, 207, 243, 246
FriOI GRGCYC 2 cut(s) 55, 111
Fsp4HI GCNGC 4 cut(s) 166, 207, 243, 246
GluI GCNGC 4 cut(s) 166, 207, 243, 246
HaeIII GGCC 2 cut(s) 53, 70
HgaI GACGC 2 cut(s) 92, 107
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 165
HinfI GANTC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 19
Hpy99I CGWCG 2 cut(s) 23, 101
HpyAV CCTTC 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 165, 209, 242
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 165
Kzo9I GATC 1 cut(s) 72
LpnPI CCDG 4 cut(s) 23, 216, 276, 288
Lsp1109I GCAGC 4 cut(s) 177, 193, 254, 257
MaeII ACGT 1 cut(s) 21
MalI GATC 1 cut(s) 74
MbiI CCGCTC 2 cut(s) 120, 151
MboI GATC 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 55, 111
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 42, 213
MnlI CCTC 4 cut(s) 41, 60, 147, 218
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 206
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 165
NlaIV GGNNCC 2 cut(s) 52, 53
NspI RCATGY 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 152
PkrI GCNGC 4 cut(s) 167, 208, 244, 247
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 52, 53
PspOMI GGGCCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 51, 52
PspXI VCTCGAGB 1 cut(s) 152
PstI CTGCAG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 4 cut(s) 166, 207, 243, 246
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 2 cut(s) 51, 52
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 2 cut(s) 55, 111
SetI ASST 7 cut(s) 24, 31, 111, 159, 208, 217, 250
SfcI CTRYAG 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SsiI CCGC 3 cut(s) 118, 149, 237
SstI GAGCTC 1 cut(s) 111
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 153
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 48, 282
TseI GCWGC 4 cut(s) 165, 206, 242, 245
TspRI CASTG 2 cut(s) 48, 282
XceI RCATGY 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.