Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003983.1

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

25504 .. 26430

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003983.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgatggacatcttcctctcgacattgctaaggaagaagggtaccacacaattgtccgtttatttgaggatcatctctttgctgaaaatgaaaaccggcggttggttatggcgaatagagcttcgctggaccttgcatatttgcccagcagttcgttttcttccaagccaagtcatgctgcagattcacatctacctagacaccaatgatgaggaagaagagcgtcaagtggctatggcaattatggtctctttggagcctgatttgcaagaaggaatcatcccacagtggtcattttggctggatgaaccaattggagaggcatctagcagttctacacctttgcaacgaggtcaagctacaggttcacagtcactgtcatctgctcaacaaattccaaatgattccagtagcagtcgagaatgcaagtactgttatgatgctccaatcgaagcagcttgtgatccctgcgggcatgatgcttgcttcaagctacaggttccactaccatctccaccactaactgttccaccactagcagcacttcctgaagaagaagacaccaatgatgaggaagaagagcgtcaagtgggtatggcaattatggtctctttggagcctgatttgcaagaaggaatcatcccacaatggtcattttggctggatgaaccaattggagaggcacctagcagttctacacctttgcaacgaggtcaagctacaggttcacagtcactgtcatctgctcaacaacattccggtagcagtcgagaatgcgagtactgttatgatgctccgatcgaagcagcttgtgatccctgtggacatgttgcttgcttcaactgctggctaaagattcaggactctgcaaacaagtgccctctttgtcgagtagagatcaagaagattatcaagctttatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

308

Amino Acids

34.35

Weight (kDa)

4.61

Isoelectric Point (pI)

79.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	2 cut(s)	41, 682
AciI	CCGC	2 cut(s)	99, 471
AclWI	GGATC	3 cut(s)	77, 458, 809
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	3 cut(s)	43, 431, 782
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	2 cut(s)	490, 841
AluBI	AGCT	7 cut(s)	121, 359, 458, 493, 719, 809, 916
AluI	AGCT	7 cut(s)	121, 359, 458, 493, 719, 809, 916
Alw26I	GTCTC	2 cut(s)	253, 613
AlwI	GGATC	3 cut(s)	77, 458, 809
AlwNI	CAGNNNCTG	2 cut(s)	376, 736
ApeKI	GCWGC	4 cut(s)	178, 455, 539, 806
ApoI	RAATTY	1 cut(s)	393
Asp718I	GGTACC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	881
BanI	GGYRCC	2 cut(s)	41, 682
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	165, 467, 551, 818
BccI	CCATC	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	253, 613
BfaI	CTAG	4 cut(s)	197, 327, 536, 687
BfmI	CTRYAG	4 cut(s)	179, 360, 494, 720
BisI	GCNGC	4 cut(s)	179, 456, 540, 807
BlsI	GCNGC	4 cut(s)	180, 457, 541, 808
BmcAI	AGTACT	2 cut(s)	431, 782
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	5 cut(s)	43, 258, 501, 618, 684
BmsI	GCATC	4 cut(s)	332, 430, 469, 781
BpiI	GAAGAC	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	29
BsaBI	GATNNNNATC	2 cut(s)	8, 188
BsaI	GGTCTC	2 cut(s)	253, 613
BsaWI	WCCGGW	1 cut(s)	758
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	23
Bse8I	GATNNNNATC	2 cut(s)	8, 188
BseGI	GGATG	4 cut(s)	279, 310, 639, 670
BseJI	GATNNNNATC	2 cut(s)	8, 188
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	4 cut(s)	165, 467, 551, 818
BseYI	CCCAGC	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	801
BshNI	GGYRCC	2 cut(s)	41, 682
BsiEI	CGRYCG	1 cut(s)	801
BsiSI	CCGG	2 cut(s)	96, 759
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	253, 613
BsmI	GAATGC	2 cut(s)	428, 779
Bso31I	GGTCTC	2 cut(s)	253, 613
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp143I	GATC	5 cut(s)	69, 463, 798, 814, 897
BspACI	CCGC	2 cut(s)	99, 471
BspLI	GGNNCC	5 cut(s)	43, 258, 501, 618, 684
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	3 cut(s)	77, 458, 809
BspQI	GCTCTTC	2 cut(s)	213, 573
BspT107I	GGYRCC	2 cut(s)	41, 682
BspTNI	GGTCTC	2 cut(s)	253, 613
BsrDI	GCAATG	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	5 cut(s)	69, 463, 798, 814, 897
Bst4CI	ACNGT	8 cut(s)	288, 372, 378, 434, 526, 732, 738, 785
Bst6I	CTCTTC	2 cut(s)	213, 573
BstC8I	GCNNGC	4 cut(s)	473, 484, 835, 848
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	4 cut(s)	279, 310, 639, 670
BstKTI	GATC	5 cut(s)	72, 466, 801, 817, 900
BstMAI	GTCTC	2 cut(s)	253, 613
BstMBI	GATC	5 cut(s)	69, 463, 798, 814, 897
BstMCI	CGRYCG	1 cut(s)	801
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 265, 625, 843
BstNSI	RCATGY	1 cut(s)	830
BstSFI	CTRYAG	4 cut(s)	179, 360, 494, 720
BstSLI	GKGCMC	1 cut(s)	881
BstV1I	GCAGC	4 cut(s)	165, 467, 551, 818
BstV2I	GAAGAC	1 cut(s)	564
BtsCI	GGATG	4 cut(s)	279, 310, 639, 670
BtsIMutI	CAGTG	3 cut(s)	293, 374, 734
Cac8I	GCNNGC	4 cut(s)	473, 484, 835, 848
CaiI	CAGNNNCTG	2 cut(s)	376, 736
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	2 cut(s)	212, 572
Csp6I	GTAC	3 cut(s)	42, 430, 781
CviAII	CATG	3 cut(s)	175, 476, 827
CviQI	GTAC	3 cut(s)	42, 430, 781
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	5 cut(s)	71, 465, 800, 816, 899
DpnII	GATC	5 cut(s)	69, 463, 798, 814, 897
Eam1104I	CTCTTC	2 cut(s)	213, 573
EarI	CTCTTC	2 cut(s)	213, 573
Eco31I	GGTCTC	2 cut(s)	253, 613
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	570
FaeI	CATG	3 cut(s)	178, 479, 830
FatI	CATG	3 cut(s)	174, 475, 826
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	4 cut(s)	179, 456, 540, 807
FokI	GGATG	4 cut(s)	266, 317, 626, 677
Fsp4HI	GCNGC	4 cut(s)	179, 456, 540, 807
FspBI	CTAG	4 cut(s)	197, 327, 536, 687
GluI	GCNGC	4 cut(s)	179, 456, 540, 807
GsaI	CCCAGC	1 cut(s)	149
HapII	CCGG	2 cut(s)	96, 759
HgaI	GACGC	2 cut(s)	212, 572
Hin1II	CATG	3 cut(s)	178, 479, 830
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	6 cut(s)	184, 276, 404, 636, 856, 863
HpaII	CCGG	2 cut(s)	96, 759
Hpy166II	GTNNAC	3 cut(s)	368, 728, 824
Hpy188I	TCNGA	1 cut(s)	798
Hpy188III	TCNNGA	6 cut(s)	19, 419, 548, 770, 860, 901
Hpy8I	GTNNAC	3 cut(s)	368, 728, 824
HpyAV	CCTTC	3 cut(s)	31, 266, 626
HpyCH4III	ACNGT	8 cut(s)	288, 372, 378, 434, 526, 732, 738, 785
HpyCH4V	TGCA	8 cut(s)	136, 181, 268, 346, 426, 628, 706, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 265, 625, 843
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	178, 479, 830
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	5 cut(s)	69, 463, 798, 814, 897
LguI	GCTCTTC	2 cut(s)	213, 573
LmnI	GCTCC	4 cut(s)	256, 448, 616, 799
Lsp1109I	GCAGC	4 cut(s)	165, 467, 551, 818
LweI	GCATC	4 cut(s)	332, 430, 469, 781
MaeI	CTAG	4 cut(s)	197, 327, 536, 687
MaeIII	GTNAC	2 cut(s)	372, 732
MalI	GATC	5 cut(s)	71, 465, 800, 816, 899
MboI	GATC	5 cut(s)	69, 463, 798, 814, 897
MfeI	CAATTG	3 cut(s)	50, 312, 672
MhlI	GDGCHC	1 cut(s)	881
MluCI	AATT	6 cut(s)	50, 240, 312, 393, 600, 672
MlyI	GAGTC	1 cut(s)	857
MnlI	CCTC	9 cut(s)	26, 60, 205, 313, 344, 565, 673, 704, 891
MspI	CCGG	2 cut(s)	96, 759
MunI	CAATTG	3 cut(s)	50, 312, 672
Mva1269I	GAATGC	2 cut(s)	428, 779
MwoI	GCNNNNNNNGC	4 cut(s)	118, 265, 625, 843
NdeII	GATC	5 cut(s)	69, 463, 798, 814, 897
NlaIII	CATG	3 cut(s)	178, 479, 830
NlaIV	GGNNCC	5 cut(s)	43, 258, 501, 618, 684
NmuCI	GTSAC	2 cut(s)	372, 732
NspI	RCATGY	1 cut(s)	830
PciI	ACATGT	1 cut(s)	826
PciSI	GCTCTTC	2 cut(s)	213, 573
PctI	GAATGC	2 cut(s)	428, 779
PfeI	GAWTC	5 cut(s)	184, 276, 404, 636, 856
PkrI	GCNGC	4 cut(s)	180, 457, 541, 808
Ple19I	CGATCG	1 cut(s)	801
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PscI	ACATGT	1 cut(s)	826
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	5 cut(s)	43, 258, 501, 618, 684
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	183
PstNI	CAGNNNCTG	2 cut(s)	376, 736
PvuI	CGATCG	1 cut(s)	801
RsaI	GTAC	3 cut(s)	43, 431, 782
RsaNI	GTAC	3 cut(s)	42, 430, 781
SapI	GCTCTTC	2 cut(s)	213, 573
SatI	GCNGC	4 cut(s)	179, 456, 540, 807
Sau3AI	GATC	5 cut(s)	69, 463, 798, 814, 897
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	2 cut(s)	431, 782
SchI	GAGTC	1 cut(s)	857
SduI	GDGCHC	1 cut(s)	881
SfaNI	GCATC	4 cut(s)	332, 430, 469, 781
SfcI	CTRYAG	4 cut(s)	179, 360, 494, 720
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	6 cut(s)	50, 240, 312, 393, 600, 672
SsiI	CCGC	2 cut(s)	99, 471
SspMI	CTAG	4 cut(s)	197, 327, 536, 687
TaaI	ACNGT	8 cut(s)	288, 372, 378, 434, 526, 732, 738, 785
TaqI	TCGA	6 cut(s)	20, 418, 450, 769, 801, 889
TasI	AATT	6 cut(s)	50, 240, 312, 393, 600, 672
TatI	WGTACW	2 cut(s)	429, 780
TfiI	GAWTC	5 cut(s)	184, 276, 404, 636, 856
TscAI	CASTG	3 cut(s)	293, 381, 741
TseFI	GTSAC	2 cut(s)	372, 732
TseI	GCWGC	4 cut(s)	178, 455, 539, 806
Tsp45I	GTSAC	2 cut(s)	372, 732
TspDTI	ATGAA	3 cut(s)	104, 321, 681
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	3 cut(s)	293, 381, 741
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	4 cut(s)	197, 327, 536, 687
ZrmI	AGTACT	2 cut(s)	431, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.