Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

50500322 .. 50507727

Gene Structure 7406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGAGGGTGTTTTTCCGACGTGAAAGGTGGCAAGCAGGCAGTGGGAGGGGGCCATCAACAACAGAGGCCCATCAACAGGGACGCTGACTCAAACGACGCCGTTGAGCTCTTTAACCGCTCTCGTGGGGTTTATCCTCTCTACACACCGCTCGAGCCAAGCGAACAAGCTCATTCTCGTGAGAGAATTTTAGGGCCGAGTGAGGCCGACACCCTCGGCCGGCCGACATGCGGTATTGACATCGCATTGCAACGCTCCGTTAAAGAGATCCTCAAAGTTACCCTTACAACTCTTATAAAGTCTCAACCATTCCATCTATCAAATGCTTCATCAAAACTTACCACAAATCAATCCTTAGGATTTCATGATTCGAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

126

Amino Acids

13.72

Weight (kDa)

7.84

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AccBSI	CCGCTC	2 cut(s)	120, 151
AciI	CCGC	3 cut(s)	118, 149, 231
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	2 cut(s)	217, 221
AcsI	RAATTY	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	3 cut(s)	78, 219, 230
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	2 cut(s)	109, 170
AluI	AGCT	2 cut(s)	109, 170
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	6 cut(s)	52, 68, 194, 204, 217, 221
ApoI	RAATTY	1 cut(s)	186
AspS9I	GGNCC	3 cut(s)	52, 69, 194
AvaI	CYCGRG	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	2 cut(s)	123, 177
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	3 cut(s)	63, 80, 321
BceAI	ACGGC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	52, 69, 194
BmiI	GGNNCC	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 219, 230
Bse118I	RCCGGY	1 cut(s)	219
Bse21I	CCTNAGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	78, 219, 230
BseMI	GCAATG	1 cut(s)	245
BseX3I	CGGCCG	2 cut(s)	217, 221
Bsh1285I	CGRYCG	2 cut(s)	220, 224
BshFI	GGCC	6 cut(s)	54, 70, 196, 206, 219, 223
BsiEI	CGRYCG	2 cut(s)	220, 224
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	78, 219, 230
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	6 cut(s)	54, 70, 196, 206, 219, 223
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	3 cut(s)	118, 149, 231
BspANI	GGCC	6 cut(s)	54, 70, 196, 206, 219, 223
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	262
BsrBI	CCGCTC	2 cut(s)	120, 151
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	267
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	2 cut(s)	123, 177
Bst2BI	CACGAG	2 cut(s)	123, 177
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	3 cut(s)	35, 39, 221
BstDEI	CTNAG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	220, 224
BstNSI	RCATGY	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	2 cut(s)	217, 221
Bsu36I	CCTNAGG	1 cut(s)	355
BsuRI	GGCC	6 cut(s)	54, 70, 196, 206, 219, 223
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	35, 39, 221
CciI	TCATGA	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	52, 69, 194
CseI	GACGC	2 cut(s)	92, 107
CviAII	CATG	2 cut(s)	228, 365
CviJI	RGCY	9 cut(s)	54, 70, 109, 157, 170, 196, 206, 219, 223
CviKI_1	RGCY	9 cut(s)	54, 70, 109, 157, 170, 196, 206, 219, 223
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	217, 221
EagI	CGGCCG	2 cut(s)	217, 221
Ecl136II	GAGCTC	1 cut(s)	109
EclXI	CGGCCG	2 cut(s)	217, 221
Eco24I	GRGCYC	1 cut(s)	111
Eco52I	CGGCCG	2 cut(s)	217, 221
Eco53kI	GAGCTC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	2 cut(s)	231, 368
FaiI	YATR	3 cut(s)	229, 296, 366
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	227, 364
FriOI	GRGCYC	1 cut(s)	111
FseI	GGCCGGCC	1 cut(s)	223
HaeIII	GGCC	6 cut(s)	54, 70, 196, 206, 219, 223
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	2 cut(s)	92, 107
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	231, 368
HinfI	GANTC	2 cut(s)	89, 368
HpaII	CCGG	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	3 cut(s)	179, 365, 372
Hpy99I	CGWCG	2 cut(s)	23, 101
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	231, 368
KroI	GCCGGC	1 cut(s)	219
KroNI	GCCGGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	3 cut(s)	23, 64, 233
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	269
MbiI	CCGCTC	2 cut(s)	120, 151
MboI	GATC	1 cut(s)	267
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	6 cut(s)	41, 60, 147, 196, 224, 281
MroNI	GCCGGC	1 cut(s)	219
MseI	TTAA	3 cut(s)	114, 261, 379
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	1 cut(s)	220
NaeI	GCCGGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	267
NgoMIV	GCCGGC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	231, 368
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	2 cut(s)	195, 222
NspI	RCATGY	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	368
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	52, 69, 194
PspXI	VCTCGAGB	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	267
RigI	GGCCGGCC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	114, 261, 379
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	3 cut(s)	52, 69, 194
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	24, 31, 111, 172
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	3 cut(s)	118, 149, 231
SstI	GAGCTC	1 cut(s)	111
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	153, 371
TasI	AATT	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	114, 261, 379
Tru9I	TTAA	3 cut(s)	114, 261, 379
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	318, 353
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	186
XceI	RCATGY	1 cut(s)	231
XhoI	CTCGAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.