Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Reverse (-)

50448198 .. 50457096

Gene Structure 8899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACGAACTGCAGTCTGCAGGTGCACCTAGAAGTTCTACTTCTTCCGAACCAAGTCTTCATACTGCAAATTCACAGCCCCCGCCGTCTGCTCCGCTACTACCAGATGCATATGACGACGAAGAAGATCAGCAGATGGATCTGGCGATTAGGGCCTCTATGAAAGCACCAAACTTCCCTAGGGCATTTTCTACCTTGAGCATGAACCCTAGCTATGAATACGATGACGAAGAAGAGCGGCAGATCACGGCGGGAGGTATGTTCCACGCACCGTCCTCAAGGATCTGGAGCCTGGGACCATGGACAGCGTTAGATCAAGTCTCTACGGTCAGATCTTCCATCCTGATAACTTCATCTTCGGTCAGTCTGGGCTGGAAACAATTGGGCAAAAGGTCACTACACGGAGGGGGCAGAGTTGATCGATTCGGTTCTCGATGTGGTGCCCCAAGGAGGTGGAGAACTTTGACTGCTTGCAAGCAAGTAATAGAAATGTCCACCTACTTGATAACCGCGTACAAAGAAGGAGATGTAGGATCTGCACTTAATACCATGTTACAGAAACTGCAACATGCTAGGAATGGGGTCGATGTTGTCTTACAAAGTCAACATAGGACGAGAGGAGCTAGCATTAATTGGGCTCTAACCGCGTGCCTGTTGAAGAATGAGTCGGCGACTTGGTTAAGGGAACCCACCAGAGACGCAGTGAAAGCGAGTCTTAATAGGACAATTGTCGCTGCTTGTGGTCCTGAACCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04624 map04013 map04624

Pfam Domains

Protein Families

EF-hand_6 FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

252

Amino Acids

27.52

Weight (kDa)

7.71

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	238
AccII	CGCG	2 cut(s)	512, 647
AciI	CCGC	6 cut(s)	83, 95, 238, 251, 510, 645
AclWI	GGATC	3 cut(s)	147, 290, 541
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	450, 752
AgsI	TTSAA	1 cut(s)	658
AjnI	CCWGG	2 cut(s)	291, 751
AluBI	AGCT	2 cut(s)	213, 623
AluI	AGCT	2 cut(s)	213, 623
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	2 cut(s)	325, 690
Alw44I	GTGCAC	1 cut(s)	24
AlwI	GGATC	3 cut(s)	147, 290, 541
AlwNI	CAGNNNCTG	1 cut(s)	562
AoxI	GGCC	1 cut(s)	153
ApaLI	GTGCAC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	630
AspA2I	CCTAGG	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	153, 296, 743
AsuNHI	GCTAGC	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	296, 743
AvrII	CCTAGG	1 cut(s)	179
BaeGI	GKGCMC	2 cut(s)	28, 445
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	2 cut(s)	130, 347
BceAI	ACGGC	2 cut(s)	70, 264
BciT130I	CCWGG	2 cut(s)	293, 753
BcoDI	GTCTC	2 cut(s)	325, 690
BfaI	CTAG	5 cut(s)	30, 180, 210, 573, 624
BfmI	CTRYAG	2 cut(s)	11, 18
BfuAI	ACCTGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	2 cut(s)	239, 735
BlnI	CCTAGG	1 cut(s)	179
BlsI	GCNGC	2 cut(s)	240, 736
Bme1390I	CCNGG	2 cut(s)	293, 753
Bme18I	GGWCC	2 cut(s)	296, 743
BmgT120I	GGNCC	3 cut(s)	153, 296, 743
BmiI	GGNNCC	4 cut(s)	290, 297, 442, 687
BmrFI	CCNGG	2 cut(s)	293, 753
BmsI	GCATC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	627
BoxI	GACNNNNGTC	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	307
BpuEI	CTTGAG	2 cut(s)	217, 262
Bsa29I	ATCGAT	1 cut(s)	421
BsaJI	CCNNGG	5 cut(s)	179, 292, 299, 446, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	450, 752
BseBI	CCWGG	2 cut(s)	293, 753
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	5 cut(s)	179, 292, 299, 446, 752
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	450, 752
BseRI	GAGGAG	1 cut(s)	633
BseSI	GKGCMC	2 cut(s)	28, 445
BseXI	GCAGC	1 cut(s)	721
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	2 cut(s)	512, 647
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	450, 752
BsmAI	GTCTC	2 cut(s)	325, 690
BsmBI	CGTCTC	1 cut(s)	690
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	28, 445, 640
Bsp143I	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	6 cut(s)	83, 95, 238, 251, 510, 645
BspANI	GGCC	1 cut(s)	155
BspDI	ATCGAT	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	512, 647
BspLI	GGNNCC	4 cut(s)	290, 297, 442, 687
BspMAI	CTGCAG	2 cut(s)	15, 22
BspMI	ACCTGC	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	147, 290, 541
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	238
BssECI	CCNNGG	5 cut(s)	179, 292, 299, 446, 752
BssMI	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
BssT1I	CCWWGG	3 cut(s)	179, 299, 446
Bst2UI	CCWGG	2 cut(s)	293, 753
Bst4CI	ACNGT	2 cut(s)	273, 328
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	472, 476, 625, 649
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	2 cut(s)	512, 647
BstKTI	GATC	8 cut(s)	130, 142, 246, 285, 316, 335, 421, 536
BstMAI	GTCTC	2 cut(s)	325, 690
BstMBI	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 644, 707
BstNI	CCWGG	2 cut(s)	293, 753
BstNSI	RCATGY	1 cut(s)	572
BstPAI	GACNNNNGTC	1 cut(s)	728
BstSCI	CCNGG	2 cut(s)	291, 751
BstSFI	CTRYAG	2 cut(s)	11, 18
BstSLI	GKGCMC	2 cut(s)	28, 445
BstUI	CGCG	2 cut(s)	512, 647
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	4 cut(s)	139, 282, 332, 533
BstXI	CCANNNNNNTGG	1 cut(s)	453
BstYI	RGATCY	4 cut(s)	139, 282, 332, 533
Bsu15I	ATCGAT	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	155
BsuTUI	ATCGAT	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	708
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	4 cut(s)	472, 476, 625, 649
CaiI	CAGNNNCTG	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	153, 296, 743
ClaI	ATCGAT	1 cut(s)	421
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	4 cut(s)	202, 300, 550, 569
CviJI	RGCY	7 cut(s)	79, 155, 213, 291, 372, 623, 638
CviKI_1	RGCY	7 cut(s)	79, 155, 213, 291, 372, 623, 638
CviQI	GTAC	1 cut(s)	514
DpnI	GATC	8 cut(s)	129, 141, 245, 284, 315, 334, 420, 535
DpnII	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	3 cut(s)	179, 299, 446
Eco24I	GRGCYC	1 cut(s)	640
Eco47I	GGWCC	2 cut(s)	296, 743
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	291, 751
EcoT14I	CCWWGG	3 cut(s)	179, 299, 446
EcoT22I	ATGCAT	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	640
ErhI	CCWWGG	3 cut(s)	179, 299, 446
Esp3I	CGTCTC	1 cut(s)	690
FaeI	CATG	4 cut(s)	205, 303, 553, 572
FalI	AAGNNNNNCTT	4 cut(s)	25, 57, 699, 731
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	4 cut(s)	201, 299, 549, 568
FauI	CCCGC	2 cut(s)	90, 244
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	239, 735
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	2 cut(s)	239, 735
FspBI	CTAG	5 cut(s)	30, 180, 210, 573, 624
GluI	GCNGC	2 cut(s)	239, 735
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	155
HgaI	GACGC	1 cut(s)	707
Hin1II	CATG	4 cut(s)	205, 303, 553, 572
HincII	GTYRAC	1 cut(s)	605
HindII	GTYRAC	1 cut(s)	605
HinfI	GANTC	3 cut(s)	423, 665, 712
Hpy166II	GTNNAC	3 cut(s)	26, 495, 605
Hpy188I	TCNGA	2 cut(s)	49, 332
Hpy188III	TCNNGA	4 cut(s)	286, 343, 432, 746
Hpy8I	GTNNAC	3 cut(s)	26, 495, 605
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	2 cut(s)	273, 328
HpyCH4V	TGCA	8 cut(s)	13, 20, 26, 68, 110, 474, 539, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 644, 707
Hsp92II	CATG	4 cut(s)	205, 303, 553, 572
Kzo9I	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	3 cut(s)	97, 288, 620
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	5 cut(s)	30, 180, 210, 573, 624
MaeIII	GTNAC	2 cut(s)	393, 552
MalI	GATC	8 cut(s)	129, 141, 245, 284, 315, 334, 420, 535
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
MboII	GAAGA	9 cut(s)	36, 50, 134, 137, 242, 245, 327, 348, 670
MfeI	CAATTG	2 cut(s)	380, 726
MflI	RGATCY	4 cut(s)	139, 282, 332, 533
MhlI	GDGCHC	3 cut(s)	28, 445, 640
MluCI	AATT	4 cut(s)	70, 380, 631, 726
MlyI	GAGTC	2 cut(s)	674, 721
MnlI	CCTC	6 cut(s)	166, 248, 286, 398, 444, 611
Mph1103I	ATGCAT	1 cut(s)	112
MseI	TTAA	4 cut(s)	543, 630, 680, 717
MspR9I	CCNGG	2 cut(s)	293, 753
MunI	CAATTG	2 cut(s)	380, 726
MvaI	CCWGG	2 cut(s)	293, 753
MvnI	CGCG	2 cut(s)	512, 647
MwoI	GCNNNNNNNGC	3 cut(s)	152, 644, 707
NcoI	CCATGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	4 cut(s)	205, 303, 553, 572
NlaIV	GGNNCC	4 cut(s)	290, 297, 442, 687
NmuCI	GTSAC	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	572
PaqCI	CACCTGC	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	240, 736
PleI	GAGTC	2 cut(s)	673, 720
PpsI	GAGTC	2 cut(s)	673, 720
PshAI	GACNNNNGTC	1 cut(s)	728
PshBI	ATTAAT	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	291, 751
PspGI	CCWGG	2 cut(s)	291, 751
PspN4I	GGNNCC	4 cut(s)	290, 297, 442, 687
PspPI	GGNCC	3 cut(s)	153, 296, 743
PstI	CTGCAG	2 cut(s)	15, 22
PstNI	CAGNNNCTG	1 cut(s)	562
PsuI	RGATCY	4 cut(s)	139, 282, 332, 533
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	543, 630, 680, 717
SatI	GCNGC	2 cut(s)	239, 735
Sau3AI	GATC	8 cut(s)	127, 139, 243, 282, 313, 332, 418, 533
Sau96I	GGNCC	3 cut(s)	153, 296, 743
SchI	GAGTC	2 cut(s)	674, 721
ScrFI	CCNGG	2 cut(s)	293, 753
SduI	GDGCHC	3 cut(s)	28, 445, 640
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	2 cut(s)	11, 18
SinI	GGWCC	2 cut(s)	296, 743
SmlI	CTYRAG	2 cut(s)	196, 277
SmoI	CTYRAG	2 cut(s)	196, 277
Sse9I	AATT	4 cut(s)	70, 380, 631, 726
SsiI	CCGC	6 cut(s)	83, 95, 238, 251, 510, 645
SspMI	CTAG	5 cut(s)	30, 180, 210, 573, 624
StyD4I	CCNGG	2 cut(s)	291, 751
StyI	CCWWGG	3 cut(s)	179, 299, 446
TaaI	ACNGT	2 cut(s)	273, 328
TaqI	TCGA	3 cut(s)	421, 433, 585
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	4 cut(s)	70, 380, 631, 726
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	4 cut(s)	543, 630, 680, 717
Tru9I	TTAA	4 cut(s)	543, 630, 680, 717
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	5 cut(s)	50, 176, 218, 231, 342
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	708
VneI	GTGCAC	1 cut(s)	24
VpaK11BI	GGWCC	2 cut(s)	296, 743
VspI	ATTAAT	1 cut(s)	630
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	572
XmaJI	CCTAGG	1 cut(s)	179
XspI	CTAG	5 cut(s)	30, 180, 210, 573, 624
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.