Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Reverse (-)

30343156 .. 30343922

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1228100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAGGATGCTTTTCGGACGTGAGGGGAGGCAAGGACGCCGTGGGCGGGGCCCTGCCAAGGCCCACCGAACCGAACGCCAAGAACGACGGCGCTCACAACGATGCCATTGAATTCTTTTACAGGGCGCATGGTGCTTACCCGCTTTTTACGCAACTCGAGGTACAACTCCGGCACTGCTTCTGCAGGGTTGCAGAGAAAATTGAAAAGTTCAGACCATTTTACTATTATATTGTTGAAGTCTTGAAGATGAAGTTTCATTCGAGGTTTAACGAAAAGTTCACGGTACTGTTCACTTTAACGAAAAATCATATTTTTACACTAAAAAGTCAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

113

Amino Acids

12.95

Weight (kDa)

9.24

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	48, 143
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	165, 288
AfiI	CCNNNNNNNGG	2 cut(s)	48, 60
AgsI	TTSAA	4 cut(s)	113, 206, 239, 247
AjiI	CACGTC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	51, 62
ApaI	GGGCCC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	2 cut(s)	95, 130
AspS9I	GGNCC	3 cut(s)	51, 52, 63
AvaI	CYCGRG	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	55
BceAI	ACGGC	2 cut(s)	26, 106
BfmI	CTRYAG	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	51, 52, 63
BmiI	GGNNCC	2 cut(s)	52, 53
BmsI	GCATC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	42, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 60
BseDI	CCNNGG	2 cut(s)	42, 59
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	48, 60
BseSI	GKGCMC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	53, 64
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	48, 60
BsnI	GGCC	2 cut(s)	53, 64
BsoBI	CYCGRG	1 cut(s)	158
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	55
BspACI	CCGC	2 cut(s)	48, 143
BspANI	GGCC	2 cut(s)	53, 64
BspLI	GGNNCC	2 cut(s)	52, 53
BspMAI	CTGCAG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	42, 59
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	286, 291
BstACI	GRCGYC	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 151
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	53, 64
BtgI	CCRYGG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	95, 130
Cfr13I	GGNCC	3 cut(s)	51, 52, 63
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	164, 287
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	2 cut(s)	53, 64
CviKI_1	RGCY	2 cut(s)	53, 64
CviQI	GTAC	2 cut(s)	164, 287
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	51, 52
EcoRI	GAATTC	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	1 cut(s)	134
FaiI	YATR	3 cut(s)	132, 231, 312
FatI	CATG	1 cut(s)	130
FauI	CCCGC	2 cut(s)	41, 150
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	55
GlaI	GCGC	2 cut(s)	94, 129
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	53, 64
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	95, 130
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	2 cut(s)	93, 128
HinP1I	GCGC	2 cut(s)	93, 128
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	282, 294
Hpy188I	TCNGA	2 cut(s)	19, 215
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	282, 294
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4III	ACNGT	2 cut(s)	286, 291
HpyCH4IV	ACGT	2 cut(s)	21, 335
HpyCH4V	TGCA	2 cut(s)	186, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 151
HpySE526I	ACGT	2 cut(s)	21, 335
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	2 cut(s)	93, 128
LpnPI	CCDG	4 cut(s)	68, 109, 172, 185
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	2 cut(s)	21, 335
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	2 cut(s)	113, 201
MnlI	CCTC	4 cut(s)	18, 23, 154, 258
MseI	TTAA	2 cut(s)	270, 299
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	134, 151
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	52, 53
PaeR7I	CTCGAG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	52, 53
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	51, 52, 63
PspXI	VCTCGAGB	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	165, 288
RsaNI	GTAC	2 cut(s)	164, 287
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	270, 299
Sau96I	GGNCC	3 cut(s)	51, 52, 63
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	4 cut(s)	24, 165, 269, 338
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	184
Sfr274I	CTCGAG	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	113, 201
SsiI	CCGC	2 cut(s)	48, 143
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	286, 291
TaiI	ACGT	2 cut(s)	24, 338
TaqI	TCGA	2 cut(s)	159, 263
TasI	AATT	2 cut(s)	113, 201
Tru1I	TTAA	2 cut(s)	270, 299
Tru9I	TTAA	2 cut(s)	270, 299
TscAI	CASTG	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	248, 266
TspRI	CASTG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.