Rh3DG052600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002274
Physical Location & Seq
Forward (+)
3545494 .. 3567330
21837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG052600.1

Sequence Viewer

Length: 297 bp
ATGCCAGAGAAGTTATCCGTCAATGTCAGGCACCTTACGTACACTTCGATCTATCTTGGGATGCCAGTGAAGATGGATCGGAGAACTGAGTTACTTGGATTGACTTTGACGTCCAAGTCGGTCCAACTTGTTTCCGTTGCAATGCTTGAATGGATTCCCGACGAAACAGATAAGGGGAAAGAAATAAAGATTCCGACAGTATGGACGTGTCATATGACCAATATCCCCTCTCCTGCAGAAGCACTCAACAAACCTGAGTTGTCTGAATTAAAGAATAATATTGGGCCTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.02

Weight (kDa)

6.09

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 109, 115
AatII GACGTC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 30
AclWI GGATC 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 149
AjiI CACGTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 121, 284
AvaII GGWCC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 30
BccI CCATC 1 cut(s) 67
BfmI CTRYAG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 121, 284
BmiI GGNNCC 1 cut(s) 32
BmsI GCATC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 147
BseGI GGATG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 78, 246
BseNI ACTGG 1 cut(s) 65
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 30
BsnI GGCC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 48, 76
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 79, 247
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 65
BssMI GATC 2 cut(s) 48, 76
BssNI GRCGYC 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 87, 255
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 2 cut(s) 51, 79
BstMBI GATC 2 cut(s) 48, 76
BstSFI CTRYAG 1 cut(s) 234
BstSNI TACGTA 1 cut(s) 39
BsuRI GGCC 1 cut(s) 286
BtrI CACGTC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 121, 284
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 1 cut(s) 286
CviKI_1 RGCY 1 cut(s) 286
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 87, 255
DpnI GATC 2 cut(s) 50, 78
DpnII GATC 2 cut(s) 48, 76
DrdI GACNNNNNNGTC 2 cut(s) 109, 115
DseDI GACNNNNNNGTC 2 cut(s) 109, 115
Eco105I TACGTA 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 121
FaiI YATR 3 cut(s) 202, 213, 215
FauNDI CATATG 1 cut(s) 213
FokI GGATG 1 cut(s) 73
HaeIII GGCC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 110
HinfI GANTC 2 cut(s) 154, 190
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 3 cut(s) 81, 195, 265
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 3 cut(s) 38, 110, 206
HpyCH4V TGCA 2 cut(s) 140, 236
HpyF3I CTNAG 2 cut(s) 87, 255
HpySE526I ACGT 3 cut(s) 38, 110, 206
Hsp92I GRCGYC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 48, 76
LpnPI CCDG 5 cut(s) 13, 18, 78, 246, 267
LweI GCATC 1 cut(s) 51
MaeII ACGT 3 cut(s) 38, 110, 206
MaeIII GTNAC 1 cut(s) 90
MalI GATC 2 cut(s) 50, 78
MboI GATC 2 cut(s) 48, 76
MboII GAAGA 1 cut(s) 82
MluCI AATT 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 148, 218
MnlI CCTC 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 269
NdeI CATATG 1 cut(s) 213
NdeII GATC 2 cut(s) 48, 76
NlaIV GGNNCC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 154, 190
Ppu21I YACGTR 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 2 cut(s) 121, 284
PstI CTGCAG 1 cut(s) 238
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 2 cut(s) 48, 76
Sau96I GGNCC 2 cut(s) 121, 284
SetI ASST 5 cut(s) 36, 41, 113, 209, 256
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 121
SnaBI TACGTA 1 cut(s) 39
Sse9I AATT 1 cut(s) 266
SspI AATATT 1 cut(s) 280
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 3 cut(s) 41, 113, 209
TaqI TCGA 1 cut(s) 47
TaqII GACCGA 1 cut(s) 109
TasI AATT 1 cut(s) 266
TfiI GAWTC 2 cut(s) 154, 190
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 72
TspGWI ACGGA 2 cut(s) 7, 124
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 153
ZraI GACGTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.